Package ubic.gemma.persistence.service.expression.experiment

Interface GeeqService

All Superinterfaces:

BaseReadOnlyService<Geeq>, BaseVoEnabledService<Geeq,GeeqValueObject>

All Known Implementing Classes:

GeeqServiceImpl

public interface GeeqService
extends BaseVoEnabledService<Geeq,GeeqValueObject>

Nested Class Summary

Nested Classes

Modifier and Type	Interface	Description
static enum	GeeqService.ScoreMode	Modes for filling GEEQ scores.

Method Summary

Modifier and Type	Method	Description
Geeq	calculateScore(ExpressionExperiment ee, GeeqService.ScoreMode mode)	Calculates the GEEQ score in the given mode for the experiment with the given id.

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledService

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Method Details

calculateScore

Geeq calculateScore(ExpressionExperiment ee,
 GeeqService.ScoreMode mode)

Calculates the GEEQ score in the given mode for the experiment with the given id.

Parameters:

ee - the id of the experiment to calculate the scores for.

mode - either run all scores, or only re-score batch effect, batch confound or replicates.