Uses of Package
ubic.gemma.persistence.service.expression.experiment

Packages that use ubic.gemma.persistence.service.expression.experiment

Package	Description
ubic.gemma.apps	This package contains built-in Gemma CLI applications.
ubic.gemma.core.analysis.expression.coexpression
ubic.gemma.core.analysis.service
ubic.gemma.core.loader.expression.geo.service
ubic.gemma.core.ontology
ubic.gemma.core.scheduler
ubic.gemma.core.tasks.maintenance
ubic.gemma.persistence.service.analysis.expression
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.expression.biomaterial
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome.taxon
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.util.args

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.apps

Class	Description
ExpressionExperimentService
SingleCellExpressionExperimentService

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.core.analysis.expression.coexpression

Class	Description
ExpressionExperimentService

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.core.analysis.service

Class	Description
ExpressionExperimentMetaFileType	Types of metadata files that can be attached to an ExpressionExperiment.

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.core.loader.expression.geo.service

Class	Description
ExpressionExperimentService

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.core.ontology

Class	Description
FactorValueService

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.core.scheduler

Class	Description
ExpressionExperimentService

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.core.tasks.maintenance

Class	Description
ExpressionExperimentService
FactorValueService

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.persistence.service.analysis.expression

Class	Description
ExpressionExperimentDao	Created by tesarst on 13/03/17.

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.persistence.service.common.description

Class	Description
StatementDao

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.persistence.service.expression.biomaterial

Class	Description
ExperimentalFactorDao
FactorValueDao

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.persistence.service.expression.experiment

Class	Description
ExperimentalDesignDao
ExperimentalDesignService
ExperimentalFactorDao
ExperimentalFactorService
ExpressionExperimentDao	Created by tesarst on 13/03/17.
ExpressionExperimentDao.Identifiers
ExpressionExperimentGeoService	This service provides access to GEO metadata for any given Gemma dataset.
ExpressionExperimentMetaFileType	Types of metadata files that can be attached to an ExpressionExperiment.
ExpressionExperimentPrePersistService	Sets up the array designs before saving an experiment.
ExpressionExperimentSearchService
ExpressionExperimentService
ExpressionExperimentService.CharacteristicWithUsageStatisticsAndOntologyTerm
ExpressionExperimentSetService
ExpressionExperimentSetValueObjectHelper
ExpressionExperimentSubSetDao
ExpressionExperimentSubSetService
FactorValueDao
FactorValueDeletion	This interface needed to be extracted for factor value deletions in order to be able to make the methods transactional
FactorValueMigratorService
FactorValueMigratorService.Migration
FactorValueMigratorService.Migration.MigrationBuilder
FactorValueMigratorService.MigrationFailedException	Keep track of the first failed migration when multiple migrations are performed in a single transaction.
FactorValueMigratorService.MigrationResult
FactorValueNeedsAttentionService	Service to manipulate the "needs attention" flag on FactorValues.
FactorValueService
GeeqDao
GeeqService
GeeqService.ScoreMode	Modes for filling GEEQ scores.
SingleCellExpressionExperimentService
SingleCellExpressionExperimentService.SingleCellDimensionInitializationConfig
SingleCellExpressionExperimentService.SingleCellDimensionInitializationConfig.SingleCellDimensionInitializationConfigBuilder
SingleCellExpressionExperimentService.SingleCellVectorInitializationConfig
SingleCellExpressionExperimentService.SingleCellVectorInitializationConfig.SingleCellVectorInitializationConfigBuilder
StatementDao

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.persistence.service.genome.taxon

Class	Description
ExpressionExperimentService

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.persistence.util

Class	Description
ExpressionExperimentService
ExpressionExperimentSetService

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.rest

Class	Description
ExpressionExperimentService

Classes in ubic.gemma.persistence.service.expression.experiment used by ubic.gemma.rest.util.args

Class	Description
ExpressionExperimentService