Uses of Interface
ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService

Packages that use ExpressionExperimentService

Package	Description
ubic.gemma.core.analysis.expression.coexpression
ubic.gemma.core.apps
ubic.gemma.core.loader.expression.geo.service
ubic.gemma.core.tasks.maintenance
ubic.gemma.core.visualization
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome.taxon
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.util.args
ubic.gemma.web.controller.common.auditAndSecurity
ubic.gemma.web.controller.expression.experiment
ubic.gemma.web.services

Uses of ExpressionExperimentService in ubic.gemma.core.analysis.expression.coexpression

Constructors in ubic.gemma.core.analysis.expression.coexpression with parameters of type ExpressionExperimentService

Constructor	Description
GeneCoexpressionSearchServiceImpl(ExpressionExperimentService expressionExperimentService, CoexpressionService coexpressionService, CoexpressionAnalysisService coexpressionAnalysisService, GeneService geneService)

Uses of ExpressionExperimentService in ubic.gemma.core.apps

Fields in ubic.gemma.core.apps declared as ExpressionExperimentService

Modifier and Type	Field	Description
protected ExpressionExperimentService	ExpressionExperimentManipulatingCLI.eeService

Uses of ExpressionExperimentService in ubic.gemma.core.loader.expression.geo.service

Fields in ubic.gemma.core.loader.expression.geo.service declared as ExpressionExperimentService

Modifier and Type	Field	Description
protected ExpressionExperimentService	GeoBrowserServiceImpl.expressionExperimentService

Uses of ExpressionExperimentService in ubic.gemma.core.tasks.maintenance

Constructors in ubic.gemma.core.tasks.maintenance with parameters of type ExpressionExperimentService

Constructor	Description
CharacteristicUpdateTaskImpl(BioMaterialService bioMaterialService, CharacteristicService characteristicService, ExpressionExperimentService expressionExperimentService, FactorValueService factorValueService, gemma.gsec.SecurityService securityService)

Uses of ExpressionExperimentService in ubic.gemma.core.visualization

Constructors in ubic.gemma.core.visualization with parameters of type ExpressionExperimentService

Constructor	Description
ExperimentalDesignVisualizationServiceImpl(ExpressionExperimentService expressionExperimentService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.service.expression.experiment

Classes in ubic.gemma.persistence.service.expression.experiment that implement ExpressionExperimentService

Modifier and Type	Class	Description
class	ExpressionExperimentServiceImpl

Constructors in ubic.gemma.persistence.service.expression.experiment with parameters of type ExpressionExperimentService

Constructor	Description
ExpressionExperimentSearchServiceImpl(ExpressionExperimentSetService expressionExperimentSetService, CoexpressionAnalysisService coexpressionAnalysisService, DifferentialExpressionAnalysisService differentialExpressionAnalysisService, gemma.gsec.SecurityService securityService, SearchService searchService, TaxonService taxonService, ExpressionExperimentService expressionExperimentService)
ExpressionExperimentSetServiceImpl(ExpressionExperimentSetDao expressionExperimentSetDao, ExpressionExperimentService expressionExperimentService)
ExpressionExperimentSetValueObjectHelperImpl(ExpressionExperimentSetService expressionExperimentSetService, ExpressionExperimentService expressionExperimentService, TaxonService taxonService, gemma.gsec.SecurityService securityService)
FactorValueServiceImpl(ExpressionExperimentService expressionExperimentService, AuditTrailService auditTrailService, AuditEventService auditEventService, FactorValueDao factorValueDao, StatementDao statementDao)
GeeqServiceImpl(GeeqDao geeqDao, ExpressionExperimentService expressionExperimentService, ExpressionExperimentBatchInformationService expressionExperimentBatchInformationService, ArrayDesignService arrayDesignService, ExpressionDataMatrixService expressionDataMatrixService, OutlierDetectionService outlierDetectionService, AuditTrailService auditTrailService, SampleCoexpressionAnalysisService sampleCoexpressionAnalysisService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.service.genome.taxon

Methods in ubic.gemma.persistence.service.genome.taxon with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
void	TaxonServiceImpl.setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.util

Methods in ubic.gemma.persistence.util with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
org.springframework.core.convert.ConversionService	ValueObjectConfig.valueObjectConversionService(ArrayDesignService arrayDesignService, BibliographicReferenceService bibliographicReferenceService, BioSequenceService bioSequenceService, CompositeSequenceService compositeSequenceService, ExpressionExperimentService expressionExperimentService, ExpressionExperimentSetService experimentSetService, GeneService geneService, GeneSetService geneSetService, BlacklistedEntityService blacklistedEntityService)

Uses of ExpressionExperimentService in ubic.gemma.rest

Constructors in ubic.gemma.rest with parameters of type ExpressionExperimentService

Constructor	Description
AnnotationsWebService(OntologyService ontologyService, SearchService searchService, CharacteristicService characteristicService, ExpressionExperimentService expressionExperimentService, DatasetArgService datasetArgService, TaxonArgService taxonArgService)	Constructor for service autowiring
TaxaWebService(TaxonService taxonService, ExpressionExperimentService expressionExperimentService, PhenotypeAssociationManagerService phenotypeAssociationManagerService, TaxonArgService taxonArgService, DatasetArgService datasetArgService, GeneArgService geneArgService)	Constructor for service autowiring

Uses of ExpressionExperimentService in ubic.gemma.rest.util.args

Constructors in ubic.gemma.rest.util.args with parameters of type ExpressionExperimentService

Constructor	Description
DatasetArgService(ExpressionExperimentService service, SearchService searchService, ArrayDesignService adService, BioAssayService baService, OutlierDetectionService outlierDetectionService)
PlatformArgService(ArrayDesignService service, ExpressionExperimentService eeService, CompositeSequenceService csService)

Uses of ExpressionExperimentService in ubic.gemma.web.controller.common.auditAndSecurity

Methods in ubic.gemma.web.controller.common.auditAndSecurity with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
void	SecurityController.setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)

Uses of ExpressionExperimentService in ubic.gemma.web.controller.expression.experiment

Methods in ubic.gemma.web.controller.expression.experiment with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
void	ExpressionExperimentFormController.setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)

Uses of ExpressionExperimentService in ubic.gemma.web.services

Methods in ubic.gemma.web.services with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
void	ArrayDesignUsedEndpoint.setExpressionExperimentService(ExpressionExperimentService ees)	Sets the "business service" to delegate to.
void	DEDVfromEEIDGeneIDEndpoint.setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
void	DEDVRankEndpoint.setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
void	DifferentialExpressionProbeResultEndpoint.setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
void	ExperimentAnnotationEndpoint.setExpressionExperimentService(ExpressionExperimentService ExpressionExperimentService)	Sets the "business service" to delegate to.
void	ExperimentDEDVEndpoint.setExpressionExperimentService(ExpressionExperimentService ees)	Sets the "business service" to delegate to.
void	ExperimentIDbyTaxonEndpoint.setExpressionExperimentService(ExpressionExperimentService ees)	Sets the "business service" to delegate to.
void	ExperimentIdEndpoint.setExpressionExperimentService(ExpressionExperimentService ees)	Sets the "business service" to delegate to.
void	ExperimentNameEndpoint.setExpressionExperimentService(ExpressionExperimentService ees)	Sets the "business service" to delegate to.
void	ExperimentNumSamplesEndpoint.setExpressionExperimentService(ExpressionExperimentService ees)	Sets the "business service" to delegate to.