Uses of Interface
ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService
-
-
Uses of ExpressionExperimentService in ubic.gemma.core.analysis.expression.coexpression
Constructors in ubic.gemma.core.analysis.expression.coexpression with parameters of type ExpressionExperimentService Constructor Description GeneCoexpressionSearchServiceImpl(ExpressionExperimentService expressionExperimentService, CoexpressionService coexpressionService, CoexpressionAnalysisService coexpressionAnalysisService, GeneService geneService)
-
Uses of ExpressionExperimentService in ubic.gemma.core.apps
Fields in ubic.gemma.core.apps declared as ExpressionExperimentService Modifier and Type Field Description protected ExpressionExperimentService
ExpressionExperimentManipulatingCLI. eeService
-
Uses of ExpressionExperimentService in ubic.gemma.core.expression.experiment.service
Constructors in ubic.gemma.core.expression.experiment.service with parameters of type ExpressionExperimentService Constructor Description ExpressionExperimentSearchServiceImpl(ExpressionExperimentSetService expressionExperimentSetService, CoexpressionAnalysisService coexpressionAnalysisService, DifferentialExpressionAnalysisService differentialExpressionAnalysisService, gemma.gsec.SecurityService securityService, SearchService searchService, TaxonService taxonService, ExpressionExperimentService expressionExperimentService)
-
Uses of ExpressionExperimentService in ubic.gemma.core.loader.expression.geo.service
Fields in ubic.gemma.core.loader.expression.geo.service declared as ExpressionExperimentService Modifier and Type Field Description protected ExpressionExperimentService
GeoBrowserServiceImpl. expressionExperimentService
Constructors in ubic.gemma.core.loader.expression.geo.service with parameters of type ExpressionExperimentService Constructor Description GeoServiceImpl(ArrayDesignReportService arrayDesignReportService, BioAssayService bioAssayService, ExpressionExperimentReportService expressionExperimentReportService, ExpressionExperimentService expressionExperimentService, ExpressionExperimentPrePersistService expressionExperimentPrePersistService, TaxonService taxonService, CharacteristicService characteristicService, BioMaterialService bioMaterialSerivce, BibliographicReferenceService bibliographicReferenceService, AuditTrailService auditTrailService)
-
Uses of ExpressionExperimentService in ubic.gemma.core.tasks.maintenance
Constructors in ubic.gemma.core.tasks.maintenance with parameters of type ExpressionExperimentService Constructor Description CharacteristicUpdateTaskImpl(BioMaterialService bioMaterialService, CharacteristicService characteristicService, ExpressionExperimentService expressionExperimentService, FactorValueService factorValueService, gemma.gsec.SecurityService securityService)
-
Uses of ExpressionExperimentService in ubic.gemma.core.visualization
Constructors in ubic.gemma.core.visualization with parameters of type ExpressionExperimentService Constructor Description ExperimentalDesignVisualizationServiceImpl(ExpressionExperimentService expressionExperimentService)
-
Uses of ExpressionExperimentService in ubic.gemma.persistence.service.expression.experiment
Classes in ubic.gemma.persistence.service.expression.experiment that implement ExpressionExperimentService Modifier and Type Class Description class
ExpressionExperimentServiceImpl
Methods in ubic.gemma.persistence.service.expression.experiment with parameters of type ExpressionExperimentService Modifier and Type Method Description void
ExpressionExperimentSetServiceImpl. setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
Constructors in ubic.gemma.persistence.service.expression.experiment with parameters of type ExpressionExperimentService Constructor Description FactorValueServiceImpl(ExpressionExperimentService expressionExperimentService, AuditTrailService auditTrailService, AuditEventService auditEventService, FactorValueDao factorValueDao, StatementDao statementDao)
GeeqServiceImpl(GeeqDao geeqDao, ExpressionExperimentService expressionExperimentService, ArrayDesignService arrayDesignService, ExpressionDataMatrixService expressionDataMatrixService, OutlierDetectionService outlierDetectionService, AuditTrailService auditTrailService, SampleCoexpressionAnalysisService sampleCoexpressionAnalysisService)
-
Uses of ExpressionExperimentService in ubic.gemma.persistence.service.genome.taxon
Methods in ubic.gemma.persistence.service.genome.taxon with parameters of type ExpressionExperimentService Modifier and Type Method Description void
TaxonServiceImpl. setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
-
Uses of ExpressionExperimentService in ubic.gemma.persistence.util
Methods in ubic.gemma.persistence.util with parameters of type ExpressionExperimentService Modifier and Type Method Description ConversionService
ValueObjectConfig. valueObjectConversionService(ArrayDesignService arrayDesignService, BibliographicReferenceService bibliographicReferenceService, BioSequenceService bioSequenceService, CompositeSequenceService compositeSequenceService, ExpressionExperimentService expressionExperimentService, ExpressionExperimentSetService experimentSetService, GeneService geneService, GeneSetService geneSetService, BlacklistedEntityService blacklistedEntityService)
-
Uses of ExpressionExperimentService in ubic.gemma.rest
Constructors in ubic.gemma.rest with parameters of type ExpressionExperimentService Constructor Description AnnotationsWebService(OntologyService ontologyService, SearchService searchService, CharacteristicService characteristicService, ExpressionExperimentService expressionExperimentService, DatasetArgService datasetArgService, TaxonArgService taxonArgService)
Constructor for service autowiringTaxaWebService(TaxonService taxonService, ExpressionExperimentService expressionExperimentService, PhenotypeAssociationManagerService phenotypeAssociationManagerService, TaxonArgService taxonArgService, DatasetArgService datasetArgService, GeneArgService geneArgService)
Constructor for service autowiring -
Uses of ExpressionExperimentService in ubic.gemma.rest.util.args
Constructors in ubic.gemma.rest.util.args with parameters of type ExpressionExperimentService Constructor Description DatasetArgService(ExpressionExperimentService service, SearchService searchService, ArrayDesignService adService, BioAssayService baService, OutlierDetectionService outlierDetectionService)
PlatformArgService(ArrayDesignService service, ExpressionExperimentService eeService, CompositeSequenceService csService)
-
Uses of ExpressionExperimentService in ubic.gemma.web.controller.common.auditAndSecurity
Methods in ubic.gemma.web.controller.common.auditAndSecurity with parameters of type ExpressionExperimentService Modifier and Type Method Description void
SecurityController. setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
void
SecurityControllerImpl. setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
-
Uses of ExpressionExperimentService in ubic.gemma.web.controller.expression.biomaterial
Methods in ubic.gemma.web.controller.expression.biomaterial with parameters of type ExpressionExperimentService Modifier and Type Method Description void
BioMaterialController. setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
-
Uses of ExpressionExperimentService in ubic.gemma.web.controller.expression.experiment
Methods in ubic.gemma.web.controller.expression.experiment with parameters of type ExpressionExperimentService Modifier and Type Method Description void
ExpressionExperimentFormController. setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
-
Uses of ExpressionExperimentService in ubic.gemma.web.services
Methods in ubic.gemma.web.services with parameters of type ExpressionExperimentService Modifier and Type Method Description void
ArrayDesignUsedEndpoint. setExpressionExperimentService(ExpressionExperimentService ees)
Sets the "business service" to delegate to.void
DEDVfromEEIDGeneIDEndpoint. setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
void
DEDVRankEndpoint. setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
void
DifferentialExpressionProbeResultEndpoint. setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)
void
ExperimentAnnotationEndpoint. setExpressionExperimentService(ExpressionExperimentService ExpressionExperimentService)
Sets the "business service" to delegate to.void
ExperimentDEDVEndpoint. setExpressionExperimentService(ExpressionExperimentService ees)
Sets the "business service" to delegate to.void
ExperimentIDbyTaxonEndpoint. setExpressionExperimentService(ExpressionExperimentService ees)
Sets the "business service" to delegate to.void
ExperimentIdEndpoint. setExpressionExperimentService(ExpressionExperimentService ees)
Sets the "business service" to delegate to.void
ExperimentNameEndpoint. setExpressionExperimentService(ExpressionExperimentService ees)
Sets the "business service" to delegate to.void
ExperimentNumSamplesEndpoint. setExpressionExperimentService(ExpressionExperimentService ees)
Sets the "business service" to delegate to.
-