Uses of Interface
ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService

Packages that use ExpressionExperimentService

Package	Description
ubic.gemma.apps	This package contains built-in Gemma CLI applications.
ubic.gemma.core.config	This package contains classes that are used to manage Gemma's Spring context.
ubic.gemma.core.loader.expression.cellxgene	This package contains classes for loading expression data from CELLxGENE.
ubic.gemma.core.scheduler
ubic.gemma.core.tasks.maintenance
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome.taxon
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.util.args

Uses of ExpressionExperimentService in ubic.gemma.apps

Fields in ubic.gemma.apps declared as ExpressionExperimentService

Modifier and Type	Field	Description
protected ExpressionExperimentService	ExpressionExperimentManipulatingCLI.eeService

Uses of ExpressionExperimentService in ubic.gemma.core.config

Methods in ubic.gemma.core.config with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
org.springframework.scheduling.quartz.JobDetailFactoryBean	SchedulerConfig.batchInfoJobDetail(ExpressionExperimentService expressionExperimentService, ExpressionExperimentReportService expressionExperimentReportService, AuditEventService auditEventService, org.springframework.security.core.context.SecurityContext securityContext)

Uses of ExpressionExperimentService in ubic.gemma.core.loader.expression.cellxgene

Constructors in ubic.gemma.core.loader.expression.cellxgene with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	CellXGeneDataLoaderServiceImpl(Persister persister, ArrayDesignService arrayDesignService, ExpressionExperimentService expressionExperimentService, SingleCellExpressionExperimentService singleCellExpressionExperimentService, ExternalDatabaseService externalDatabaseService, DatabaseEntryService databaseEntryService, TaxonReadService taxonReadService, SingleCellDataTransformationFactory singleCellDataTransformationFactory, org.springframework.transaction.PlatformTransactionManager transactionManager, Path cellXGeneDownloadPath, Path cellXGeneTransposedPath, String ncbiApiKey)

Uses of ExpressionExperimentService in ubic.gemma.core.scheduler

Methods in ubic.gemma.core.scheduler with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
void	BatchInfoRepopulationJob.setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)

Uses of ExpressionExperimentService in ubic.gemma.core.tasks.maintenance

Constructors in ubic.gemma.core.tasks.maintenance with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	CharacteristicUpdateTaskImpl(BioMaterialService bioMaterialService, CharacteristicService characteristicService, ExpressionExperimentService expressionExperimentService, FactorValueService factorValueService, SecurityService securityService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.service.common.description

Constructors in ubic.gemma.persistence.service.common.description with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	BibliographicReferenceReadServiceImpl(BibliographicReferenceDao bibliographicReferenceDao, SearchService searchService, ExpressionExperimentService expressionExperimentService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.service.expression.experiment

Classes in ubic.gemma.persistence.service.expression.experiment that implement ExpressionExperimentService

Modifier and Type	Class	Description
class	ExpressionExperimentServiceImpl

Constructors in ubic.gemma.persistence.service.expression.experiment with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	ExpressionExperimentSearchServiceImpl(ExpressionExperimentSetService expressionExperimentSetService, DifferentialExpressionAnalysisService differentialExpressionAnalysisService, SecurityService securityService, SearchService searchService, TaxonService taxonService, ExpressionExperimentService expressionExperimentService)
	ExpressionExperimentSetValueObjectHelperImpl(ExpressionExperimentSetService expressionExperimentSetService, ExpressionExperimentService expressionExperimentService, TaxonService taxonService, SecurityService securityService)
	GeeqServiceImpl(GeeqDao geeqDao, ExpressionExperimentService expressionExperimentService, ExpressionExperimentBatchInformationService expressionExperimentBatchInformationService, OutlierDetectionService outlierDetectionService, GeeqAuditService geeqAuditService, SampleCoexpressionAnalysisService sampleCoexpressionAnalysisService)
	PreboardedExperimentServiceImpl(SessionFactory sessionFactory, AnnotationSetService annotationSetService, ExpressionExperimentService expressionExperimentService, PreboardedAuditService preboardedAuditService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.service.genome.taxon

Constructors in ubic.gemma.persistence.service.genome.taxon with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	TaxonReadServiceImpl(TaxonDao taxonDao, ExpressionExperimentService expressionExperimentService, ArrayDesignService arrayDesignService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.util

Methods in ubic.gemma.persistence.util with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
org.springframework.core.convert.ConversionService	ValueObjectConfig.valueObjectConversionService(ArrayDesignService arrayDesignService, BibliographicReferenceService bibliographicReferenceService, BioSequenceService bioSequenceService, CompositeSequenceService compositeSequenceService, ExpressionExperimentService expressionExperimentService, ExpressionExperimentSetService experimentSetService, GeneService geneService, GeneSetService geneSetService, BlacklistedEntityService blacklistedEntityService)

Uses of ExpressionExperimentService in ubic.gemma.rest

Constructors in ubic.gemma.rest with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	AnnotationsWebService(OntologyService ontologyService, SearchService searchService, CharacteristicService characteristicService, ExpressionExperimentService expressionExperimentService, DatasetArgService datasetArgService, TaxonArgService taxonArgService)	Back-compat constructor for tests that wire only the core collaborators.
	AnnotationsWebService(OntologyService ontologyService, SearchService searchService, CharacteristicService characteristicService, ExpressionExperimentService expressionExperimentService, DatasetArgService datasetArgService, TaxonArgService taxonArgService, GeneService geneService, Map<String, AnnotationSearchRankingStrategy> rankingStrategies)	Constructor for service autowiring
	PreboardedWebService(PreboardedExperimentService preboardedService, AnnotationSetService annotationSetService, ExpressionExperimentService expressionExperimentService)
	TaxaWebService(TaxonService taxonService, ExpressionExperimentService expressionExperimentService, TaxonArgService taxonArgService, DatasetArgService datasetArgService, GeneArgService geneArgService, GeneService geneService)	Constructor for service autowiring
	TicketsWebService(TicketService ticketService, UserManager userManager, UserReadService userReadService, ExpressionExperimentService expressionExperimentService, PreboardedExperimentService preboardedExperimentService)
	WorkflowWebService(WorkflowService workflowService, ExpressionExperimentService expressionExperimentService)

Uses of ExpressionExperimentService in ubic.gemma.rest.util.args

Subclasses with type arguments of type ExpressionExperimentService in ubic.gemma.rest.util.args

Modifier and Type	Class	Description
class	DatasetArg<T>	Mutable argument type base class for dataset (ExpressionExperiment) API.
class	DatasetArgService
class	DatasetArrayArg

Constructors in ubic.gemma.rest.util.args with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	DatasetArgService(ExpressionExperimentService service, SearchService searchService, ArrayDesignService adService, BioAssayService baService, OutlierDetectionService outlierDetectionService, PublicationAssociationService publicationAssociationService)
	PlatformArgService(ArrayDesignService service, ExpressionExperimentService eeService, CompositeSequenceService csService, CompositeSequenceArgService csArgService)