Uses of Interface
ubic.gemma.persistence.service.expression.experiment.ExpressionExperimentService

Packages that use ExpressionExperimentService

Package	Description
ubic.gemma.apps	This package contains built-in Gemma CLI applications.
ubic.gemma.core.analysis.expression.coexpression
ubic.gemma.core.loader.expression.cellxgene	This package contains classes for loading expression data from CELLxGENE.
ubic.gemma.core.loader.expression.geo.service
ubic.gemma.core.scheduler
ubic.gemma.core.tasks.maintenance
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome.taxon
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.util.args

Uses of ExpressionExperimentService in ubic.gemma.apps

Fields in ubic.gemma.apps declared as ExpressionExperimentService

Modifier and Type	Field	Description
protected ExpressionExperimentService	ExpressionExperimentManipulatingCLI.eeService

Uses of ExpressionExperimentService in ubic.gemma.core.analysis.expression.coexpression

Constructors in ubic.gemma.core.analysis.expression.coexpression with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	GeneCoexpressionSearchServiceImpl(ExpressionExperimentService expressionExperimentService, CoexpressionService coexpressionService, CoexpressionAnalysisService coexpressionAnalysisService, GeneService geneService)

Uses of ExpressionExperimentService in ubic.gemma.core.loader.expression.cellxgene

Constructors in ubic.gemma.core.loader.expression.cellxgene with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	CellXGeneDataLoaderServiceImpl(Persister persister, ArrayDesignService arrayDesignService, ExpressionExperimentService expressionExperimentService, SingleCellExpressionExperimentService singleCellExpressionExperimentService, ExternalDatabaseService externalDatabaseService, TaxonService taxonService, SingleCellDataTransformationFactory singleCellDataTransformationFactory, org.springframework.transaction.PlatformTransactionManager transactionManager, Path cellXGeneDownloadPath, Path cellXGeneTransposedPath, String ncbiApiKey)

Uses of ExpressionExperimentService in ubic.gemma.core.loader.expression.geo.service

Fields in ubic.gemma.core.loader.expression.geo.service declared as ExpressionExperimentService

Modifier and Type	Field	Description
protected ExpressionExperimentService	GeoBrowserServiceImpl.expressionExperimentService

Uses of ExpressionExperimentService in ubic.gemma.core.scheduler

Methods in ubic.gemma.core.scheduler with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
void	BatchInfoRepopulationJob.setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)

Uses of ExpressionExperimentService in ubic.gemma.core.tasks.maintenance

Constructors in ubic.gemma.core.tasks.maintenance with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	CharacteristicUpdateTaskImpl(BioMaterialService bioMaterialService, CharacteristicService characteristicService, ExpressionExperimentService expressionExperimentService, FactorValueService factorValueService, gemma.gsec.SecurityService securityService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.service.expression.experiment

Classes in ubic.gemma.persistence.service.expression.experiment that implement ExpressionExperimentService

Modifier and Type	Class	Description
class	ExpressionExperimentServiceImpl

Constructors in ubic.gemma.persistence.service.expression.experiment with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	ExpressionExperimentSearchServiceImpl(ExpressionExperimentSetService expressionExperimentSetService, CoexpressionAnalysisService coexpressionAnalysisService, DifferentialExpressionAnalysisService differentialExpressionAnalysisService, gemma.gsec.SecurityService securityService, SearchService searchService, TaxonService taxonService, ExpressionExperimentService expressionExperimentService)
	ExpressionExperimentSetServiceImpl(ExpressionExperimentSetDao expressionExperimentSetDao, ExpressionExperimentService expressionExperimentService)
	ExpressionExperimentSetValueObjectHelperImpl(ExpressionExperimentSetService expressionExperimentSetService, ExpressionExperimentService expressionExperimentService, TaxonService taxonService, gemma.gsec.SecurityService securityService)
	GeeqServiceImpl(GeeqDao geeqDao, ExpressionExperimentService expressionExperimentService, ExpressionExperimentBatchInformationService expressionExperimentBatchInformationService, ArrayDesignService arrayDesignService, ExpressionDataMatrixService expressionDataMatrixService, OutlierDetectionService outlierDetectionService, AuditTrailService auditTrailService, SampleCoexpressionAnalysisService sampleCoexpressionAnalysisService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.service.genome.taxon

Methods in ubic.gemma.persistence.service.genome.taxon with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
void	TaxonServiceImpl.setExpressionExperimentService(ExpressionExperimentService expressionExperimentService)

Uses of ExpressionExperimentService in ubic.gemma.persistence.util

Methods in ubic.gemma.persistence.util with parameters of type ExpressionExperimentService

Modifier and Type	Method	Description
org.springframework.core.convert.ConversionService	ValueObjectConfig.valueObjectConversionService(ArrayDesignService arrayDesignService, BibliographicReferenceService bibliographicReferenceService, BioSequenceService bioSequenceService, CompositeSequenceService compositeSequenceService, ExpressionExperimentService expressionExperimentService, ExpressionExperimentSetService experimentSetService, GeneService geneService, GeneSetService geneSetService, BlacklistedEntityService blacklistedEntityService)

Uses of ExpressionExperimentService in ubic.gemma.rest

Constructors in ubic.gemma.rest with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	AnnotationsWebService(OntologyService ontologyService, SearchService searchService, CharacteristicService characteristicService, ExpressionExperimentService expressionExperimentService, DatasetArgService datasetArgService, TaxonArgService taxonArgService)	Constructor for service autowiring
	TaxaWebService(TaxonService taxonService, ExpressionExperimentService expressionExperimentService, TaxonArgService taxonArgService, DatasetArgService datasetArgService, GeneArgService geneArgService, GeneService geneService)	Constructor for service autowiring

Uses of ExpressionExperimentService in ubic.gemma.rest.util.args

Constructors in ubic.gemma.rest.util.args with parameters of type ExpressionExperimentService

Modifier	Constructor	Description
	DatasetArgService(ExpressionExperimentService service, SearchService searchService, ArrayDesignService adService, BioAssayService baService, OutlierDetectionService outlierDetectionService)
	PlatformArgService(ArrayDesignService service, ExpressionExperimentService eeService, CompositeSequenceService csService)