Package ubic.gemma.persistence.service.expression.experiment

Class FactorValueMigratorServiceImpl

java.lang.Object

ubic.gemma.persistence.service.expression.experiment.FactorValueMigratorServiceImpl

All Implemented Interfaces:

FactorValueMigratorService

@Service
@Deprecated
public class FactorValueMigratorServiceImpl
extends Object
implements FactorValueMigratorService

Deprecated.

Nested Class Summary

Nested classes/interfaces inherited from interface ubic.gemma.persistence.service.expression.experiment.FactorValueMigratorService

FactorValueMigratorService.Migration, FactorValueMigratorService.MigrationFailedException, FactorValueMigratorService.MigrationResult

Constructor Summary

Constructors

Constructor	Description
FactorValueMigratorServiceImpl()	Deprecated.

Method Summary

Modifier and Type	Method	Description
FactorValueMigratorService.MigrationResult	performMigration(FactorValueMigratorService.Migration migration, boolean noop)	Deprecated. Perform the given migration.
Map<Long,List<FactorValueMigratorService.MigrationResult>>	performMigrationOfRemainingFactorValues(Set<Long> migratedFactorValueIds, boolean migrateNonTrivialCases, boolean noop)	Deprecated. Migrate all remaining factor values that have not been migrated yet.
List<FactorValueMigratorService.MigrationResult>	performMigrationOfRemainingOldStyleCharacteristics(Long fvId, Set<Long> migratedOldStyleCharacteristicIds, boolean noop)	Deprecated. Migrate all the old-style characteristics of a given factor value to subject-only statements.
List<FactorValueMigratorService.MigrationResult>	performMultipleMigrations(List<FactorValueMigratorService.Migration> migrations, boolean noop)	Deprecated. Perform multiple migrations in a single transaction.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FactorValueMigratorServiceImpl

public FactorValueMigratorServiceImpl()

Deprecated.

Method Detail

performMigration

@Transactional
public FactorValueMigratorService.MigrationResult performMigration(FactorValueMigratorService.Migration migration,
                                                                   boolean noop)

Deprecated.

Description copied from interface: FactorValueMigratorService

Perform the given migration.

Specified by:

performMigration in interface FactorValueMigratorService

Parameters:

migration - a migration to perform

noop - if true, do not save the resulting statement

Returns:

the created or updated statement

performMultipleMigrations

@Transactional
public List<FactorValueMigratorService.MigrationResult> performMultipleMigrations(List<FactorValueMigratorService.Migration> migrations,
                                                                                  boolean noop)
                                                                           throws FactorValueMigratorService.MigrationFailedException

Deprecated.

Description copied from interface: FactorValueMigratorService

Perform multiple migrations in a single transaction.

Specified by:

performMultipleMigrations in interface FactorValueMigratorService

Parameters:

migrations - a list of migrations to perform

Returns:

a list of created or updated statements

Throws:

FactorValueMigratorService.MigrationFailedException - if any of the migrations fail, the first failed migration is stored in the exception wrapper

performMigrationOfRemainingOldStyleCharacteristics

@Transactional
public List<FactorValueMigratorService.MigrationResult> performMigrationOfRemainingOldStyleCharacteristics(Long fvId,
                                                                                                           Set<Long> migratedOldStyleCharacteristicIds,
                                                                                                           boolean noop)

Deprecated.

Description copied from interface: FactorValueMigratorService

Migrate all the old-style characteristics of a given factor value to subject-only statements.

The FV will be marked as troubled.

Specified by:

performMigrationOfRemainingOldStyleCharacteristics in interface FactorValueMigratorService

Parameters:

fvId - ID of the factor value to migrate

migratedOldStyleCharacteristicIds - a set of already migrated old-style characteristic IDs, if null the Characteristic.isMigratedToStatement() flag will be used to determine if a characteristic has already been migrated

noop - if true, do not save the resulting statements

Returns:

list of created or updated statements from the given factor value

performMigrationOfRemainingFactorValues

@Transactional(propagation=NEVER)
public Map<Long,List<FactorValueMigratorService.MigrationResult>> performMigrationOfRemainingFactorValues(Set<Long> migratedFactorValueIds,
                                                                                                                boolean migrateNonTrivialCases,
                                                                                                                boolean noop)

Deprecated.

Description copied from interface: FactorValueMigratorService

Migrate all remaining factor values that have not been migrated yet.

All the FVs with zero or one characteristics will be migrated automatically unless migratedToSubjectOnly is set, in which case all the old-style characteristics will be migrated to subject-only statements.

Specified by:

performMigrationOfRemainingFactorValues in interface FactorValueMigratorService

Parameters:

migratedFactorValueIds - IDs of already migrated FVs

migrateNonTrivialCases - allow migration to subject-only statements for FVs with more than one old-style characteristics; those FVs will be marked as troubled.

noop - if true, do not save the resulting statements

Returns:

created of updated statements organized by factor value ID