Package ubic.gemma.persistence.service.genome.sequenceAnalysis

Interface AnnotationAssociationService

All Superinterfaces:

AdminEditableBaseImmutableService<AnnotationAssociation>, BaseImmutableService<AnnotationAssociation>, BaseReadOnlyService<AnnotationAssociation>

All Known Implementing Classes:

AnnotationAssociationServiceImpl

public interface AnnotationAssociationService
extends AdminEditableBaseImmutableService<AnnotationAssociation>

Author:

paul

Method Summary

Modifier and Type	Method	Description
Collection<AnnotationAssociation>	find(BioSequence bioSequence)
Collection<AnnotationAssociation>	find(Gene gene)
Collection<AnnotationValueObject>	removeRootTerms(Collection<AnnotationValueObject> associations)

Methods inherited from interface ubic.gemma.persistence.service.common.auditAndSecurity.AdminEditableBaseImmutableService

create, create, findOrCreate, remove, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Method Details

find

Collection<AnnotationAssociation> find(BioSequence bioSequence)

find

Collection<AnnotationAssociation> find(Gene gene)

removeRootTerms

Collection<AnnotationValueObject> removeRootTerms(Collection<AnnotationValueObject> associations)