Package ubic.gemma.persistence.service.genome.sequenceAnalysis

Interface AnnotationAssociationService

All Superinterfaces:

BaseImmutableService<AnnotationAssociation>, BaseReadOnlyService<AnnotationAssociation>

All Known Implementing Classes:

AnnotationAssociationServiceImpl

public interface AnnotationAssociationService
extends BaseImmutableService<AnnotationAssociation>

Author:

paul

Method Summary

Modifier and Type	Method	Description
AnnotationAssociation	create(AnnotationAssociation annotationAssociation)	Creates the given entity in the persistent storage.
Collection<AnnotationAssociation>	find(BioSequence bioSequence)
Collection<AnnotationAssociation>	find(Gene gene)
void	remove(Collection<AnnotationAssociation> anCollection)	Removes all the given entities from persistent storage.
void	remove(AnnotationAssociation annotationAssociation)	Removes the given entity from the persistent storage.
Collection<AnnotationValueObject>	removeRootTerms(Collection<AnnotationValueObject> associations)

Methods inherited from interface ubic.gemma.persistence.service.BaseImmutableService

create, findOrCreate, remove

Methods inherited from interface ubic.gemma.persistence.service.BaseReadOnlyService

countAll, find, findOrFail, getElementClass, load, load, loadAll, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, loadOrFail, streamAll, streamAll

Method Details

create

@Secured("GROUP_USER")
AnnotationAssociation create(AnnotationAssociation annotationAssociation)

Description copied from interface: BaseImmutableService

Creates the given entity in the persistent storage.

Specified by:

create in interface BaseImmutableService<AnnotationAssociation>

Parameters:

annotationAssociation - the entity to be created.

Returns:

object referencing the persistent instance of the given entity.

remove

@Secured("GROUP_USER")
void remove(Collection<AnnotationAssociation> anCollection)

Description copied from interface: BaseImmutableService

Removes all the given entities from persistent storage.

Specified by:

remove in interface BaseImmutableService<AnnotationAssociation>

Parameters:

anCollection - the entities to be removed.

remove

@Secured("GROUP_USER")
void remove(AnnotationAssociation annotationAssociation)

Description copied from interface: BaseImmutableService

Removes the given entity from the persistent storage.

Specified by:

remove in interface BaseImmutableService<AnnotationAssociation>

Parameters:

annotationAssociation - the entity to be removed.

find

Collection<AnnotationAssociation> find(BioSequence bioSequence)

find

Collection<AnnotationAssociation> find(Gene gene)

removeRootTerms

Collection<AnnotationValueObject> removeRootTerms(Collection<AnnotationValueObject> associations)