Package ubic.gemma.persistence.service.genome.sequenceAnalysis

Class BlatResultDaoImpl

java.lang.Object

ubic.gemma.persistence.service.AbstractDao<BlatResult>

ubic.gemma.persistence.service.AbstractVoEnabledDao<BlatResult,BlatResultValueObject>

ubic.gemma.persistence.service.genome.sequenceAnalysis.BlatResultDaoImpl

All Implemented Interfaces:

BaseDao<BlatResult>, BaseVoEnabledDao<BlatResult,BlatResultValueObject>, BlatResultDao

@Repository
public class BlatResultDaoImpl
extends AbstractVoEnabledDao<BlatResult,BlatResultValueObject>
implements BlatResultDao

Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.genome.sequenceAnalysis.BlatResult.

See Also:

• BlatResult

Field Summary

Fields inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

REPORT_SLOW_QUERY_AFTER_MS

Fields inherited from class ubic.gemma.persistence.service.AbstractDao

log

Constructor Summary

Constructors

Constructor	Description
BlatResultDaoImpl(SessionFactory sessionFactory)

Method Summary

Modifier and Type	Method	Description
protected BlatResultValueObject	doLoadValueObject(BlatResult entity)	Load a value object for a given entity.
Collection<BlatResult>	findByBioSequence(BioSequence bioSequence)	Find BLAT results for the given sequence
Collection<BlatResult>	thaw(Collection<BlatResult> blatResults)
BlatResult	thaw(BlatResult blatResult)

Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao

doLoadValueObjects, loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds, postProcessValueObjects

Methods inherited from class ubic.gemma.persistence.service.AbstractDao

countAll, create, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getEntityName, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, streamQuery, update, update

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao

countAll, create, create, find, findOrCreate, getElementClass, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao

loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

Constructor Details

BlatResultDaoImpl

@Autowired
public BlatResultDaoImpl(SessionFactory sessionFactory)

Method Details

thaw

public BlatResult thaw(BlatResult blatResult)

Specified by:

thaw in interface BlatResultDao

thaw

public Collection<BlatResult> thaw(Collection<BlatResult> blatResults)

Specified by:

thaw in interface BlatResultDao

findByBioSequence

public Collection<BlatResult> findByBioSequence(BioSequence bioSequence)

Description copied from interface: BlatResultDao

Find BLAT results for the given sequence

Specified by:

findByBioSequence in interface BlatResultDao

Parameters:

bioSequence - BA

Returns:

matching blat results

doLoadValueObject

protected BlatResultValueObject doLoadValueObject(BlatResult entity)

Description copied from class: AbstractVoEnabledDao

Load a value object for a given entity.

This should be fast and efficient, and avoid any database query or post-processing. If you need to perform additional queries, implement AbstractVoEnabledDao.postProcessValueObjects(List) instead.

Specified by:

doLoadValueObject in class AbstractVoEnabledDao<BlatResult,BlatResultValueObject>