BlatResultDaoImpl (Gemma 1.32.0 API)

java.lang.Object
- ubic.gemma.persistence.service.AbstractDao<O>
- - ubic.gemma.persistence.service.AbstractVoEnabledDao<BlatResult,BlatResultValueObject>
  - - ubic.gemma.persistence.service.genome.sequenceAnalysis.BlatResultDaoImpl

All Implemented Interfaces:

BaseDao<BlatResult>, BaseVoEnabledDao<BlatResult,BlatResultValueObject>, BlatResultDao
```
@Repository
public class BlatResultDaoImpl
extends AbstractVoEnabledDao<BlatResult,BlatResultValueObject>
implements BlatResultDao
```
Base Spring DAO Class: is able to create, update, remove, load, and find objects of type ubic.gemma.model.genome.sequenceAnalysis.BlatResult.

See Also:

BlatResult

Field Summary
- Fields inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao
  REPORT_SLOW_QUERY_AFTER_MS
- Fields inherited from class ubic.gemma.persistence.service.AbstractDao
  log

Constructor Summary

Constructors
Constructor Description

BlatResultDaoImpl(SessionFactory sessionFactory)

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`protected BlatResultValueObject`	`doLoadValueObject(BlatResult entity)`	Load a value object for a given entity.
`Collection<BlatResult>`	`findByBioSequence(BioSequence bioSequence)`	Find BLAT results for the given sequence
`Collection<BlatResult>`	`thaw(Collection<BlatResult> blatResults)`
`BlatResult`	`thaw(BlatResult blatResult)`

Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao
doLoadValueObjects, loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds, postProcessValueObjects

Methods inherited from class ubic.gemma.persistence.service.AbstractDao
countAll, create, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, streamQuery, update, update

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface ubic.gemma.persistence.service.BaseDao
countAll, create, create, find, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, reload, reload, remove, remove, remove, save, save, streamAll, streamAll, update, update

Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao
loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds

- Constructor Detail
  - BlatResultDaoImpl
```
@Autowired
public BlatResultDaoImpl(SessionFactory sessionFactory)
```
- Method Detail
  - thaw
```
public BlatResult thaw(BlatResult blatResult)
```
    Specified by:
    
    thaw in interface BlatResultDao
  - thaw
```
public Collection<BlatResult> thaw(Collection<BlatResult> blatResults)
```
    Specified by:
    
    thaw in interface BlatResultDao
  - findByBioSequence
```
public Collection<BlatResult> findByBioSequence(BioSequence bioSequence)
```
    Description copied from interface: BlatResultDao
    
    Find BLAT results for the given sequence
    
    Specified by:
    
    findByBioSequence in interface BlatResultDao
    
    Parameters:
    
    bioSequence - BA
    
    Returns:
    
    matching blat results
  - doLoadValueObject
```
protected BlatResultValueObject doLoadValueObject(BlatResult entity)
```
    Description copied from class: AbstractVoEnabledDao
    
    Load a value object for a given entity.
    This should be fast and efficient, and avoid any database query or post-processing. If you need to perform additional queries, implement AbstractVoEnabledDao.postProcessValueObjects(List) instead.
    
    Specified by:
    
    doLoadValueObject in class AbstractVoEnabledDao<BlatResult,BlatResultValueObject>