Class BlatResultDaoImpl
- java.lang.Object
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- ubic.gemma.persistence.service.AbstractDao<O>
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- ubic.gemma.persistence.service.AbstractVoEnabledDao<BlatResult,BlatResultValueObject>
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- ubic.gemma.persistence.service.genome.sequenceAnalysis.BlatResultDaoImpl
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- All Implemented Interfaces:
BaseDao<BlatResult>
,BaseVoEnabledDao<BlatResult,BlatResultValueObject>
,BlatResultDao
@Repository public class BlatResultDaoImpl extends AbstractVoEnabledDao<BlatResult,BlatResultValueObject> implements BlatResultDao
Base Spring DAO Class: is able to create, update, remove, load, and find objects of type
ubic.gemma.model.genome.sequenceAnalysis.BlatResult
.- See Also:
BlatResult
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Field Summary
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Fields inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao
REPORT_SLOW_QUERY_AFTER_MS
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Fields inherited from class ubic.gemma.persistence.service.AbstractDao
elementClass, log
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Constructor Summary
Constructors Constructor Description BlatResultDaoImpl(SessionFactory sessionFactory)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description protected BlatResultValueObject
doLoadValueObject(BlatResult entity)
Load a value object for a given entity.Collection<BlatResult>
findByBioSequence(BioSequence bioSequence)
Find BLAT results for the given sequenceCollection<BlatResult>
thaw(Collection<BlatResult> blatResults)
BlatResult
thaw(BlatResult blatResult)
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Methods inherited from class ubic.gemma.persistence.service.AbstractVoEnabledDao
doLoadValueObjects, loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds, postProcessValueObjects
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Methods inherited from class ubic.gemma.persistence.service.AbstractDao
countAll, create, create, find, findByProperty, findByPropertyIn, findOneByProperty, findOrCreate, getBatchSize, getElementClass, getIdentifierPropertyName, getSessionFactory, load, load, loadAll, loadReference, loadReference, remove, remove, remove, save, save, update, update
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
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Methods inherited from interface ubic.gemma.persistence.service.BaseDao
countAll, create, create, find, findOrCreate, getElementClass, getIdentifierPropertyName, load, load, loadAll, loadReference, loadReference, remove, remove, remove, save, save, update, update
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Methods inherited from interface ubic.gemma.persistence.service.BaseVoEnabledDao
loadAllValueObjects, loadValueObject, loadValueObjectById, loadValueObjects, loadValueObjectsByIds
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Constructor Detail
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BlatResultDaoImpl
@Autowired public BlatResultDaoImpl(SessionFactory sessionFactory)
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Method Detail
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thaw
public BlatResult thaw(BlatResult blatResult)
- Specified by:
thaw
in interfaceBlatResultDao
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thaw
public Collection<BlatResult> thaw(Collection<BlatResult> blatResults)
- Specified by:
thaw
in interfaceBlatResultDao
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findByBioSequence
public Collection<BlatResult> findByBioSequence(BioSequence bioSequence)
Description copied from interface:BlatResultDao
Find BLAT results for the given sequence- Specified by:
findByBioSequence
in interfaceBlatResultDao
- Parameters:
bioSequence
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- matching blat results
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doLoadValueObject
protected BlatResultValueObject doLoadValueObject(BlatResult entity)
Description copied from class:AbstractVoEnabledDao
Load a value object for a given entity.This should be fast and efficient, and avoid any database query or post-processing. If you need to perform additional queries, implement
AbstractVoEnabledDao.postProcessValueObjects(List)
instead.- Specified by:
doLoadValueObject
in classAbstractVoEnabledDao<BlatResult,BlatResultValueObject>
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