Package ubic.gemma.rest

Class PhenotypeWebService

java.lang.Object

ubic.gemma.rest.PhenotypeWebService

@Deprecated
@Service
@Path("/phenotypes")
public class PhenotypeWebService
extends Object

Deprecated.

RESTful interface for phenotypes. Does not have an 'all' endpoint (no use-cases). To list all phenotypes on a specific taxon, see TaxaWebService.getTaxonPhenotypes(TaxonArg, Boolean, Boolean)}.

Author:

tesarst

Constructor Summary

Constructors

Constructor	Description
PhenotypeWebService()	Deprecated. Required by spring
PhenotypeWebService(PhenotypeAssociationManagerService phenotypeAssociationManagerService)	Deprecated. Constructor for service autowiring

Method Summary

Modifier and Type	Method	Description
ResponseDataObject<Set<DumpsValueObject>>	getPhenotypeDumps()	Deprecated. Finds all dumps.
ResponseDataObject<Set<EvidenceValueObject<? extends PhenotypeAssociation>>>	getPhenotypeEvidence(String database, OffsetArg offset, LimitArg limit)	Deprecated. Finds all evidence with the given external database name.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhenotypeWebService

public PhenotypeWebService()

Deprecated.

Required by spring

PhenotypeWebService

@Autowired
public PhenotypeWebService(PhenotypeAssociationManagerService phenotypeAssociationManagerService)

Deprecated.

Constructor for service autowiring

Method Detail

getPhenotypeEvidence

@GET
@Path("/evidence")
@Produces("application/json")
public ResponseDataObject<Set<EvidenceValueObject<? extends PhenotypeAssociation>>> getPhenotypeEvidence(@QueryParam("database")
                                                                                                         String database,
                                                                                                         @QueryParam("offset") @DefaultValue("0")
                                                                                                         OffsetArg offset,
                                                                                                         @QueryParam("limit") @DefaultValue("10000")
                                                                                                         LimitArg limit)

Deprecated.

Finds all evidence with the given external database name.

Parameters:

database - The name of external database to match.

offset - Only return the result collection from this index.

limit - Limit the number of results to this amount.

Returns:

A collection of Evidence Value Objects.

getPhenotypeDumps

@GET
@Path("/dumps")
@Produces("application/json")
public ResponseDataObject<Set<DumpsValueObject>> getPhenotypeDumps()

Deprecated.

Finds all dumps.

Returns:

A collection of Dumps Value Objects.

See Also:

PhenotypeAssociationManagerService.helpFindAllDumps()