Uses of Annotation Interface
ubic.gemma.rest.annotations.Costly
Packages that use Costly
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Uses of Costly in ubic.gemma.rest
Methods in ubic.gemma.rest with annotations of type CostlyModifier and TypeMethodDescriptionGoTermsWebService.countGenesByGoTerm(String termUri, TaxonArg<?> taxonArg, boolean propagate, int maxTerms) Distinct-gene count for the given GO term, optionally including descendants.DatasetsWebService.getDatasetMeanVariance(DatasetArg<?> datasetArg) Retrieves the per-probe mean / variance pre-computed byMeanVarianceService.jakarta.ws.rs.core.ResponseDatasetsWebService.getDatasetProcessedExpression(DatasetArg<?> datasetArg, Boolean filtered, Boolean download, Boolean force) Retrieve processed expression data.jakarta.ws.rs.core.ResponseDatasetsWebService.getDatasetRawExpression(DatasetArg<?> datasetArg, QuantitationTypeArg<?> quantitationTypeArg, Boolean download, Boolean force) Retrieve raw expression data.DatasetsWebService.getDatasetSampleCorrelation(DatasetArg<?> datasetArg, DatasetsWebService.CorrelationMatrixChoice which) Retrieves the sample-sample correlation matrix plus both outlier classifications (curator-flagged + algorithmic), unmasked.DatasetsWebService.getDatasetsDifferentialExpression(DatasetArrayArg datasets, Long diffExSet, Double threshold, LimitArg limit, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate, Boolean precise) Retrieves the expression levels of genes highly expressed in the given component on given datasets.DatasetsWebService.getDatasetsExpressionLevelsForGenes(DatasetArrayArg datasets, GeneArrayArg genes, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate, Boolean precise) DatasetsWebService.getDatasetsExpressionPca(DatasetArrayArg datasets, Integer component, LimitArg limit, Boolean keepNonSpecific, ExpLevelConsolidationArg consolidate, Boolean precise) Retrieves the expression levels of genes highly expressed in the given component on given datasets.DatasetsWebService.getDatasetSvd(DatasetArg<?> datasetArg) Retrieves the design for the given dataset.GoTermsWebService.getGenesByGoTerm(String termUri, TaxonArg<?> taxonArg, OffsetArg offsetArg, LimitArg limitArg, boolean propagate, int maxTerms) Reverse lookup: genes annotated with the given GO term.SearchWebService.search(QueryArg query, DatasetArg<?> datasetArg, TaxonArg<?> taxonArg, PlatformArg<?> platformArg, List<String> resultTypes, LimitArg limit, ExcludeArg<SearchResult<?>> excludeArg, boolean useGeneOntology, boolean inferRelations) Search everything subject to taxon and platform constraints.AnnotationsWebService.searchAnnotations(StringArrayArg query, String rank, int limit, String prefixesParam, boolean upstream, boolean exactLabel, boolean exactLabelLegacy, String category, boolean suppressNearMatches, boolean suppressNearMatchesLegacy, TaxonArg<?> taxonArg, boolean includeGeneCount, int geneCountMaxTerms, boolean includeGenes, boolean includeExampleUsage, String excludeExperiments, boolean includePriorCuration) Does a search for annotation tags based on the given string.DatasetsWebService.searchDatasets(QueryArg query, LimitArg limit) Deprecated.GeneWebService.searchGenes(String query, TaxonArg<?> taxonArg, int limit) Free-text typeahead for genes.
GET /datasets?query=...(the paginated catalogue runs the same search), which every known client uses instead — no caller of this endpoint was found across gemma-ui, gemma-curation-agents, or gemma.R.