Package ubic.gemma.web.controller.common.description

Class CharacteristicBrowserController

java.lang.Object

ubic.gemma.web.controller.common.description.CharacteristicBrowserController

@Controller
public class CharacteristicBrowserController
extends Object

NOTE: Logging messages from this service are important for tracking changes to annotations.

Author:

luke, paul

See Also:

• for related methods.

Constructor Summary

Constructors

Constructor	Description
CharacteristicBrowserController()

Method Summary

Modifier and Type	Method	Description
JsonReaderResponse<AnnotationValueObject>	browse(ListBatchCommand batch)
Long	count()
Collection<AnnotationValueObject>	findCharacteristics(String valuePrefix)
Collection<AnnotationValueObject>	findCharacteristicsCustom(String queryString, boolean searchNos, boolean searchEEs, boolean searchBMs, boolean searchFVs, boolean searchFVVs, boolean searchCategories, String categoryConstraint)
String	getView()
void	removeCharacteristics(Collection<AnnotationValueObject> chars)
void	updateCharacteristics(Collection<AnnotationValueObject> avos)	Update characteristics associated with entities.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CharacteristicBrowserController

public CharacteristicBrowserController()

Method Details

browse

public JsonReaderResponse<AnnotationValueObject> browse(ListBatchCommand batch)

count

public Long count()

findCharacteristics

public Collection<AnnotationValueObject> findCharacteristics(String valuePrefix)

findCharacteristicsCustom

public Collection<AnnotationValueObject> findCharacteristicsCustom(String queryString,
 boolean searchNos,
 boolean searchEEs,
 boolean searchBMs,
 boolean searchFVs,
 boolean searchFVVs,
 boolean searchCategories,
 String categoryConstraint)

Parameters:

searchNos - search for characteristics that have no parents

searchEEs - search datasets

searchBMs - search samples

searchFVs - search experimental factors and factor values

searchFVVs - search using FactorValue's value (deprecated)

searchCategories - Should the Category be searched, not just the Value?

getView

@RequestMapping(value="/characteristicBrowser.html",
                method={GET,HEAD})
public String getView()

removeCharacteristics

public void removeCharacteristics(Collection<AnnotationValueObject> chars)

updateCharacteristics

public void updateCharacteristics(Collection<AnnotationValueObject> avos)

Update characteristics associated with entities. This allows for the case of factor values that we are adding characteristics to for the first time, but the most common case is altering existing characteristics.