Package ubic.gemma.web.controller.common.description.bibref

Class BibliographicReferenceController

java.lang.Object

ubic.gemma.web.controller.BaseController

ubic.gemma.web.controller.common.description.bibref.BibliographicReferenceController

@Controller
public class BibliographicReferenceController
extends BaseController

This controller is responsible for showing a list of all bibliographic references, as well sending the user to the pubMed.Detail.view when they click on a specific link in that list.

Author:

keshav

Field Summary

Fields inherited from class ubic.gemma.web.controller.BaseController

log

Constructor Summary

Constructors

Constructor	Description
BibliographicReferenceController()

Method Summary

Modifier and Type	Method	Description
org.springframework.web.servlet.ModelAndView	add(String pubMedId, javax.servlet.http.HttpServletRequest request)
JsonReaderResponse<BibliographicReferenceValueObject>	browse(ListBatchCommand batch)
org.springframework.web.servlet.ModelAndView	delete(String pubMedId, javax.servlet.http.HttpServletRequest request)
BibliographicReferenceValueObject	load(Long id)
Collection<BibliographicReferenceValueObject>	loadAllForExperiments()
BibliographicReferenceValueObject	loadFromPubmedID(String pubMedID)
JsonReaderResponse<BibliographicReferenceValueObject>	loadMultiple(Collection<Long> ids)
JsonReaderResponse<BibliographicReferenceValueObject>	search(SearchSettingsValueObject settings)
org.springframework.web.servlet.ModelAndView	searchBibRefs()
org.springframework.web.servlet.ModelAndView	showAllForExperiments()
org.springframework.web.servlet.ModelAndView	showByAccession(String accession, javax.servlet.http.HttpServletRequest request)
org.springframework.web.servlet.ModelAndView	showById(Long id, javax.servlet.http.HttpServletRequest request)
BibliographicReferenceValueObject	update(String pubMedId)

Methods inherited from class ubic.gemma.web.controller.BaseController

addMessage, getMessageUtil, getText, getText, saveMessage, saveMessage, sendConfirmationEmail, setMessageUtil

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

BibliographicReferenceController

public BibliographicReferenceController()

Method Detail

add

@RequestMapping(value="/bibRefAdd.html",
                method=POST)
public org.springframework.web.servlet.ModelAndView add(@RequestParam("accession")
                                                        String pubMedId,
                                                        javax.servlet.http.HttpServletRequest request)

browse

public JsonReaderResponse<BibliographicReferenceValueObject> browse(ListBatchCommand batch)

delete

@RequestMapping(value="/deleteBibRef.html",
                method=POST)
public org.springframework.web.servlet.ModelAndView delete(@RequestParam("acc")
                                                           String pubMedId,
                                                           javax.servlet.http.HttpServletRequest request)

load

public BibliographicReferenceValueObject load(Long id)

loadAllForExperiments

public Collection<BibliographicReferenceValueObject> loadAllForExperiments()

loadFromPubmedID

public BibliographicReferenceValueObject loadFromPubmedID(String pubMedID)

loadMultiple

public JsonReaderResponse<BibliographicReferenceValueObject> loadMultiple(Collection<Long> ids)

search

public JsonReaderResponse<BibliographicReferenceValueObject> search(SearchSettingsValueObject settings)

searchBibRefs

@RequestMapping(value="/searchBibRefs.html",
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView searchBibRefs()

showById

@RequestMapping(value="/bibRefView.html",
                method={GET,HEAD},
                params="id")
public org.springframework.web.servlet.ModelAndView showById(@RequestParam("id")
                                                             Long id,
                                                             javax.servlet.http.HttpServletRequest request)

showByAccession

@RequestMapping(value="/bibRefView.html",
                method={GET,HEAD},
                params="accession")
public org.springframework.web.servlet.ModelAndView showByAccession(@RequestParam("accession")
                                                                    String accession,
                                                                    javax.servlet.http.HttpServletRequest request)

showAllForExperiments

@RequestMapping(value="/showAllEeBibRefs.html",
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView showAllForExperiments()

update

public BibliographicReferenceValueObject update(String pubMedId)