Package ubic.gemma.web.controller.common.description.bibref

Class BibliographicReferenceController

java.lang.Object

ubic.gemma.web.controller.common.description.bibref.BibliographicReferenceController

All Implemented Interfaces:

org.springframework.beans.factory.InitializingBean

@Controller
public class BibliographicReferenceController
extends Object
implements org.springframework.beans.factory.InitializingBean

This controller is responsible for showing a list of all bibliographic references, as well sending the user to the pubMed.Detail.view when they click on a specific link in that list.

Author:

keshav

Field Summary

Fields

Modifier and Type	Field	Description
protected final org.apache.commons.logging.Log	log
protected org.springframework.context.MessageSource	messageSource
protected MessageUtil	messageUtil

Constructor Summary

Constructors

Constructor	Description
BibliographicReferenceController()

Method Summary

Modifier and Type	Method	Description
org.springframework.web.servlet.view.RedirectView	add(String pubMedId, Boolean refresh)
void	afterPropertiesSet()
JsonReaderResponse<BibliographicReferenceValueObject>	browse(ListBatchCommand batch)
org.springframework.web.servlet.ModelAndView	delete(String pubMedId)
BibliographicReferenceValueObject	load(Long id)
BibliographicReferenceValueObject	loadFromPubmedID(String pubMedID)
JsonReaderResponse<BibliographicReferenceValueObject>	search(SearchSettingsValueObject settings)
org.springframework.web.servlet.ModelAndView	searchBibRefs()
org.springframework.web.servlet.ModelAndView	showAllForExperiments(int offset, int limit)
org.springframework.web.servlet.ModelAndView	showByAccession(String accession)
org.springframework.web.servlet.ModelAndView	showById(Long id)
BibliographicReferenceValueObject	update(String pubMedId)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

log

protected final org.apache.commons.logging.Log log

messageSource

@Autowired
protected org.springframework.context.MessageSource messageSource

messageUtil

@Autowired
protected MessageUtil messageUtil

Constructor Details

BibliographicReferenceController

public BibliographicReferenceController()

Method Details

afterPropertiesSet

public void afterPropertiesSet()

Specified by:

afterPropertiesSet in interface org.springframework.beans.factory.InitializingBean

showAllForExperiments

@RequestMapping(value="/showAllEeBibRefs.html",
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView showAllForExperiments(@RequestParam(value="offset",defaultValue="0")
 int offset,
 @RequestParam(value="limit",defaultValue="100")
 int limit)

searchBibRefs

@RequestMapping(value="/searchBibRefs.html",
                method={GET,HEAD})
public org.springframework.web.servlet.ModelAndView searchBibRefs()

showById

@RequestMapping(value="/bibRefView.html",
                method={GET,HEAD},
                params="id")
public org.springframework.web.servlet.ModelAndView showById(@RequestParam("id")
 Long id)

showByAccession

@RequestMapping(value="/bibRefView.html",
                method={GET,HEAD},
                params="accession")
public org.springframework.web.servlet.ModelAndView showByAccession(@RequestParam("accession")
 String accession)

add

@RequestMapping(value="/bibRefAdd.html",
                method=POST)
public org.springframework.web.servlet.view.RedirectView add(@RequestParam("accession")
 String pubMedId,
 @RequestParam(value="refresh",required=false)
 Boolean refresh)

delete

@RequestMapping(value="/deleteBibRef.html",
                method=POST)
public org.springframework.web.servlet.ModelAndView delete(@RequestParam("acc")
 String pubMedId)

browse

public JsonReaderResponse<BibliographicReferenceValueObject> browse(ListBatchCommand batch)

load

public BibliographicReferenceValueObject load(Long id)

loadFromPubmedID

public BibliographicReferenceValueObject loadFromPubmedID(String pubMedID)

search

public JsonReaderResponse<BibliographicReferenceValueObject> search(SearchSettingsValueObject settings)

update

public BibliographicReferenceValueObject update(String pubMedId)