Package ubic.gemma.web.controller.expression.experiment

Class ExpressionExperimentEditController.ExpressionExperimentEditForm

java.lang.Object

ubic.gemma.web.controller.expression.experiment.ExpressionExperimentEditController.ExpressionExperimentEditForm

Enclosing class:

ExpressionExperimentEditController

public static class ExpressionExperimentEditController.ExpressionExperimentEditForm
extends Object

Constructor Summary

Constructors

Constructor	Description
ExpressionExperimentEditForm()

Method Summary

Modifier and Type	Method	Description
protected boolean	canEqual(Object other)
boolean	equals(Object o)
String	getAssayToMaterialMap()
Collection<BioAssayValueObject>	getBioAssays()	This field is populated by the backend, so it is always non-null.
List<FactorValueBasicValueObject>	getCellTypeFactorValues()	A list of values from the current cell type factor (to compare with the current preferred CTA).
String	getConfirmation()	Field used to confirm destructive actions.
String	getDescription()
Long	getId()
Set<CharacteristicValueObject>	getIncompatibleCellTypeAssignmentValues()
String	getName()
Long	getPreferredCellTypeAssignmentId()
List<CharacteristicValueObject>	getPreferredCellTypeAssignmentValues()
List<ExpressionExperimentEditController.QuantitationTypeEditForm>	getQuantitationTypes()
Map<Class<? extends DataVector>,List<ExpressionExperimentEditController.QuantitationTypeEditForm>>	getQuantitationTypesByVectorType()	quantitationTypes, organized by the type of data vector they apply to and in the same order.
String	getShortName()
List<ExpressionExperimentEditController.SingleCellDimensionEditForm>	getSingleCellDimensions()
Set<FactorValueBasicValueObject>	getUnmatchedCellTypeFactorValues()
int	hashCode()
boolean	isPreferredCellTypeAssignmentCompatibleWithCellTypeFactor()	Whether the preferred cell type assignment is compatible with the existing cell type factor.
boolean	isReturnToExperiment()	Return to the experiment page after a successful update.
void	setAssayToMaterialMap(String assayToMaterialMap)
void	setBioAssays(Collection<BioAssayValueObject> bioAssays)	This field is populated by the backend, so it is always non-null.
void	setCellTypeFactorValues(List<FactorValueBasicValueObject> cellTypeFactorValues)	A list of values from the current cell type factor (to compare with the current preferred CTA).
void	setConfirmation(String confirmation)	Field used to confirm destructive actions.
void	setDescription(String description)
void	setId(Long id)
void	setIncompatibleCellTypeAssignmentValues(Set<CharacteristicValueObject> incompatibleCellTypeAssignmentValues)
void	setName(String name)
void	setPreferredCellTypeAssignmentCompatibleWithCellTypeFactor(boolean isPreferredCellTypeAssignmentCompatibleWithCellTypeFactor)	Whether the preferred cell type assignment is compatible with the existing cell type factor.
void	setPreferredCellTypeAssignmentId(Long preferredCellTypeAssignmentId)
void	setPreferredCellTypeAssignmentValues(List<CharacteristicValueObject> preferredCellTypeAssignmentValues)
void	setQuantitationTypes(List<ExpressionExperimentEditController.QuantitationTypeEditForm> quantitationTypes)
void	setQuantitationTypesByVectorType(Map<Class<? extends DataVector>,List<ExpressionExperimentEditController.QuantitationTypeEditForm>> quantitationTypesByVectorType)	quantitationTypes, organized by the type of data vector they apply to and in the same order.
void	setReturnToExperiment(boolean returnToExperiment)	Return to the experiment page after a successful update.
void	setShortName(String shortName)
void	setSingleCellDimensions(List<ExpressionExperimentEditController.SingleCellDimensionEditForm> singleCellDimensions)
void	setUnmatchedCellTypeFactorValues(Set<FactorValueBasicValueObject> unmatchedCellTypeFactorValues)
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

ExpressionExperimentEditForm

public ExpressionExperimentEditForm()

Method Details

getId

public Long getId()

getShortName

public String getShortName()

getName

public String getName()

getDescription

public String getDescription()

getQuantitationTypes

@Nullable
public List<ExpressionExperimentEditController.QuantitationTypeEditForm> getQuantitationTypes()

getQuantitationTypesByVectorType

public Map<Class<? extends DataVector>,List<ExpressionExperimentEditController.QuantitationTypeEditForm>> getQuantitationTypesByVectorType()

quantitationTypes, organized by the type of data vector they apply to and in the same order.

getSingleCellDimensions

@Nullable
public List<ExpressionExperimentEditController.SingleCellDimensionEditForm> getSingleCellDimensions()

getBioAssays

public Collection<BioAssayValueObject> getBioAssays()

This field is populated by the backend, so it is always non-null.

getPreferredCellTypeAssignmentId

@Nullable
public Long getPreferredCellTypeAssignmentId()

getPreferredCellTypeAssignmentValues

@Nullable
public List<CharacteristicValueObject> getPreferredCellTypeAssignmentValues()

getCellTypeFactorValues

@Nullable
public List<FactorValueBasicValueObject> getCellTypeFactorValues()

A list of values from the current cell type factor (to compare with the current preferred CTA).

isPreferredCellTypeAssignmentCompatibleWithCellTypeFactor

public boolean isPreferredCellTypeAssignmentCompatibleWithCellTypeFactor()

Whether the preferred cell type assignment is compatible with the existing cell type factor.

getIncompatibleCellTypeAssignmentValues

@Nullable
public Set<CharacteristicValueObject> getIncompatibleCellTypeAssignmentValues()

getUnmatchedCellTypeFactorValues

@Nullable
public Set<FactorValueBasicValueObject> getUnmatchedCellTypeFactorValues()

getAssayToMaterialMap

@Nullable
public String getAssayToMaterialMap()

getConfirmation

public String getConfirmation()

Field used to confirm destructive actions.

isReturnToExperiment

public boolean isReturnToExperiment()

Return to the experiment page after a successful update.

The default is to stay on the edit page.

setId

public void setId(Long id)

setShortName

public void setShortName(String shortName)

setName

public void setName(String name)

setDescription

public void setDescription(String description)

setQuantitationTypes

public void setQuantitationTypes(@Nullable
 List<ExpressionExperimentEditController.QuantitationTypeEditForm> quantitationTypes)

setQuantitationTypesByVectorType

public void setQuantitationTypesByVectorType(Map<Class<? extends DataVector>,List<ExpressionExperimentEditController.QuantitationTypeEditForm>> quantitationTypesByVectorType)

quantitationTypes, organized by the type of data vector they apply to and in the same order.

setSingleCellDimensions

public void setSingleCellDimensions(@Nullable
 List<ExpressionExperimentEditController.SingleCellDimensionEditForm> singleCellDimensions)

setBioAssays

public void setBioAssays(Collection<BioAssayValueObject> bioAssays)

This field is populated by the backend, so it is always non-null.

setPreferredCellTypeAssignmentId

public void setPreferredCellTypeAssignmentId(@Nullable
 Long preferredCellTypeAssignmentId)

setPreferredCellTypeAssignmentValues

public void setPreferredCellTypeAssignmentValues(@Nullable
 List<CharacteristicValueObject> preferredCellTypeAssignmentValues)

setCellTypeFactorValues

public void setCellTypeFactorValues(@Nullable
 List<FactorValueBasicValueObject> cellTypeFactorValues)

A list of values from the current cell type factor (to compare with the current preferred CTA).

setPreferredCellTypeAssignmentCompatibleWithCellTypeFactor

public void setPreferredCellTypeAssignmentCompatibleWithCellTypeFactor(boolean isPreferredCellTypeAssignmentCompatibleWithCellTypeFactor)

Whether the preferred cell type assignment is compatible with the existing cell type factor.

setIncompatibleCellTypeAssignmentValues

public void setIncompatibleCellTypeAssignmentValues(@Nullable
 Set<CharacteristicValueObject> incompatibleCellTypeAssignmentValues)

setUnmatchedCellTypeFactorValues

public void setUnmatchedCellTypeFactorValues(@Nullable
 Set<FactorValueBasicValueObject> unmatchedCellTypeFactorValues)

setAssayToMaterialMap

public void setAssayToMaterialMap(@Nullable
 String assayToMaterialMap)

setConfirmation

public void setConfirmation(String confirmation)

Field used to confirm destructive actions.

setReturnToExperiment

public void setReturnToExperiment(boolean returnToExperiment)

Return to the experiment page after a successful update.

The default is to stay on the edit page.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

canEqual

protected boolean canEqual(Object other)

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

Overrides:

toString in class Object