Package ubic.gemma.web.persistence

Interface SessionListManager

All Known Implementing Classes:

SessionListManagerImpl

public interface SessionListManager

Method Summary

Modifier and Type	Method	Description
SessionBoundExpressionExperimentSetValueObject	addExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)
SessionBoundExpressionExperimentSetValueObject	addExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo, boolean modified)
SessionBoundGeneSetValueObject	addGeneSet(SessionBoundGeneSetValueObject gsvo)
SessionBoundGeneSetValueObject	addGeneSet(SessionBoundGeneSetValueObject gsvo, boolean modified)
Collection<SessionBoundExpressionExperimentSetValueObject>	getAllExperimentSets()
Collection<SessionBoundGeneSetValueObject>	getAllGeneSets()
Collection<SessionBoundGeneSetValueObject>	getAllGeneSets(Long taxonId)
Collection<Long>	getExperimentIdsInSet(Long id)
SessionBoundExpressionExperimentSetValueObject	getExperimentSetById(Long id)	Get the session-bound group using the group's id
Collection<ExpressionExperimentDetailsValueObject>	getExperimentsInSet(Long id)
SessionBoundGeneSetValueObject	getGeneSetById(Long id)	Get the session-bound group using the group's id
Collection<GeneValueObject>	getGenesInGroup(Long groupId)	AJAX If the current user has access to given gene group will return the gene ids in the gene group
Collection<SessionBoundExpressionExperimentSetValueObject>	getModifiedExperimentSets()
Collection<SessionBoundExpressionExperimentSetValueObject>	getModifiedExperimentSets(Long taxonId)
Collection<SessionBoundGeneSetValueObject>	getModifiedGeneSets()
Collection<SessionBoundGeneSetValueObject>	getModifiedGeneSets(Long taxonId)
Long	incrementAndGetLargestExperimentSetSessionId()
Long	incrementAndGetLargestGeneSetSessionId()
void	removeExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)
void	removeGeneSet(SessionBoundGeneSetValueObject gsvo)
void	updateExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)
void	updateGeneSet(SessionBoundGeneSetValueObject gsvo)

Method Detail

addExperimentSet

SessionBoundExpressionExperimentSetValueObject addExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)

addExperimentSet

SessionBoundExpressionExperimentSetValueObject addExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo,
                                                                boolean modified)

addGeneSet

SessionBoundGeneSetValueObject addGeneSet(SessionBoundGeneSetValueObject gsvo)

addGeneSet

SessionBoundGeneSetValueObject addGeneSet(SessionBoundGeneSetValueObject gsvo,
                                          boolean modified)

getAllExperimentSets

Collection<SessionBoundExpressionExperimentSetValueObject> getAllExperimentSets()

getAllGeneSets

Collection<SessionBoundGeneSetValueObject> getAllGeneSets()

getAllGeneSets

Collection<SessionBoundGeneSetValueObject> getAllGeneSets(Long taxonId)

getExperimentIdsInSet

Collection<Long> getExperimentIdsInSet(Long id)

getExperimentSetById

SessionBoundExpressionExperimentSetValueObject getExperimentSetById(Long id)

Get the session-bound group using the group's id

getExperimentsInSet

Collection<ExpressionExperimentDetailsValueObject> getExperimentsInSet(Long id)

getGeneSetById

SessionBoundGeneSetValueObject getGeneSetById(Long id)

Get the session-bound group using the group's id

getGenesInGroup

Collection<GeneValueObject> getGenesInGroup(Long groupId)

AJAX If the current user has access to given gene group will return the gene ids in the gene group

getModifiedExperimentSets

Collection<SessionBoundExpressionExperimentSetValueObject> getModifiedExperimentSets()

getModifiedExperimentSets

Collection<SessionBoundExpressionExperimentSetValueObject> getModifiedExperimentSets(Long taxonId)

getModifiedGeneSets

Collection<SessionBoundGeneSetValueObject> getModifiedGeneSets()

getModifiedGeneSets

Collection<SessionBoundGeneSetValueObject> getModifiedGeneSets(Long taxonId)

incrementAndGetLargestExperimentSetSessionId

Long incrementAndGetLargestExperimentSetSessionId()

incrementAndGetLargestGeneSetSessionId

Long incrementAndGetLargestGeneSetSessionId()

removeExperimentSet

void removeExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)

removeGeneSet

void removeGeneSet(SessionBoundGeneSetValueObject gsvo)

updateExperimentSet

void updateExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)

updateGeneSet

void updateGeneSet(SessionBoundGeneSetValueObject gsvo)