Package ubic.gemma.web.persistence

Class SessionListManagerImpl

java.lang.Object

ubic.gemma.web.persistence.SessionListManagerImpl

All Implemented Interfaces:

SessionListManager

@Component
public class SessionListManagerImpl
extends Object
implements SessionListManager

Author:

thea

Constructor Summary

Constructors

Constructor	Description
SessionListManagerImpl()

Method Summary

Modifier and Type	Method	Description
SessionBoundExpressionExperimentSetValueObject	addExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)
SessionBoundExpressionExperimentSetValueObject	addExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo, boolean modified)
SessionBoundGeneSetValueObject	addGeneSet(SessionBoundGeneSetValueObject gsvo)
SessionBoundGeneSetValueObject	addGeneSet(SessionBoundGeneSetValueObject gsvo, boolean modified)
Collection<SessionBoundExpressionExperimentSetValueObject>	getAllExperimentSets()
Collection<SessionBoundGeneSetValueObject>	getAllGeneSets()
Collection<SessionBoundGeneSetValueObject>	getAllGeneSets(Long taxonId)
Collection<Long>	getExperimentIdsInSet(Long id)
SessionBoundExpressionExperimentSetValueObject	getExperimentSetById(Long id)	Get the session-bound group using the group's id
Collection<ExpressionExperimentDetailsValueObject>	getExperimentsInSet(Long id)
SessionBoundGeneSetValueObject	getGeneSetById(Long id)	Get the session-bound group using the group's id
Collection<GeneValueObject>	getGenesInGroup(Long groupId)	AJAX If the current user has access to given gene group will return the gene ids in the gene group
Collection<SessionBoundExpressionExperimentSetValueObject>	getModifiedExperimentSets()
Collection<SessionBoundExpressionExperimentSetValueObject>	getModifiedExperimentSets(Long taxonId)
Collection<SessionBoundGeneSetValueObject>	getModifiedGeneSets()
Collection<SessionBoundGeneSetValueObject>	getModifiedGeneSets(Long taxonId)
Long	incrementAndGetLargestExperimentSetSessionId()
Long	incrementAndGetLargestGeneSetSessionId()
void	removeExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)
void	removeGeneSet(SessionBoundGeneSetValueObject gsvo)
void	updateExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)
void	updateGeneSet(SessionBoundGeneSetValueObject gsvo)

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SessionListManagerImpl

public SessionListManagerImpl()

Method Detail

addExperimentSet

public SessionBoundExpressionExperimentSetValueObject addExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)

Specified by:

addExperimentSet in interface SessionListManager

addExperimentSet

public SessionBoundExpressionExperimentSetValueObject addExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo,
                                                                       boolean modified)

Specified by:

addExperimentSet in interface SessionListManager

addGeneSet

public SessionBoundGeneSetValueObject addGeneSet(SessionBoundGeneSetValueObject gsvo)

Specified by:

addGeneSet in interface SessionListManager

addGeneSet

public SessionBoundGeneSetValueObject addGeneSet(SessionBoundGeneSetValueObject gsvo,
                                                 boolean modified)

Specified by:

addGeneSet in interface SessionListManager

getAllExperimentSets

public Collection<SessionBoundExpressionExperimentSetValueObject> getAllExperimentSets()

Specified by:

getAllExperimentSets in interface SessionListManager

getAllGeneSets

public Collection<SessionBoundGeneSetValueObject> getAllGeneSets()

Specified by:

getAllGeneSets in interface SessionListManager

getAllGeneSets

public Collection<SessionBoundGeneSetValueObject> getAllGeneSets(Long taxonId)

Specified by:

getAllGeneSets in interface SessionListManager

getExperimentIdsInSet

public Collection<Long> getExperimentIdsInSet(Long id)

Specified by:

getExperimentIdsInSet in interface SessionListManager

getExperimentSetById

public SessionBoundExpressionExperimentSetValueObject getExperimentSetById(Long id)

Description copied from interface: SessionListManager

Get the session-bound group using the group's id

Specified by:

getExperimentSetById in interface SessionListManager

getExperimentsInSet

public Collection<ExpressionExperimentDetailsValueObject> getExperimentsInSet(Long id)

Specified by:

getExperimentsInSet in interface SessionListManager

getGeneSetById

public SessionBoundGeneSetValueObject getGeneSetById(Long id)

Description copied from interface: SessionListManager

Get the session-bound group using the group's id

Specified by:

getGeneSetById in interface SessionListManager

getGenesInGroup

public Collection<GeneValueObject> getGenesInGroup(Long groupId)

Description copied from interface: SessionListManager

AJAX If the current user has access to given gene group will return the gene ids in the gene group

Specified by:

getGenesInGroup in interface SessionListManager

getModifiedExperimentSets

public Collection<SessionBoundExpressionExperimentSetValueObject> getModifiedExperimentSets()

Specified by:

getModifiedExperimentSets in interface SessionListManager

getModifiedExperimentSets

public Collection<SessionBoundExpressionExperimentSetValueObject> getModifiedExperimentSets(Long taxonId)

Specified by:

getModifiedExperimentSets in interface SessionListManager

getModifiedGeneSets

public Collection<SessionBoundGeneSetValueObject> getModifiedGeneSets()

Specified by:

getModifiedGeneSets in interface SessionListManager

getModifiedGeneSets

public Collection<SessionBoundGeneSetValueObject> getModifiedGeneSets(Long taxonId)

Specified by:

getModifiedGeneSets in interface SessionListManager

incrementAndGetLargestExperimentSetSessionId

public Long incrementAndGetLargestExperimentSetSessionId()

Specified by:

incrementAndGetLargestExperimentSetSessionId in interface SessionListManager

incrementAndGetLargestGeneSetSessionId

public Long incrementAndGetLargestGeneSetSessionId()

Specified by:

incrementAndGetLargestGeneSetSessionId in interface SessionListManager

removeExperimentSet

public void removeExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)

Specified by:

removeExperimentSet in interface SessionListManager

removeGeneSet

public void removeGeneSet(SessionBoundGeneSetValueObject gsvo)

Specified by:

removeGeneSet in interface SessionListManager

updateExperimentSet

public void updateExperimentSet(SessionBoundExpressionExperimentSetValueObject eesvo)

Specified by:

updateExperimentSet in interface SessionListManager

updateGeneSet

public void updateGeneSet(SessionBoundGeneSetValueObject gsvo)

Specified by:

updateGeneSet in interface SessionListManager