Package ubic.basecode.ontology.providers
Class FMAOntologyService
- java.lang.Object
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- ubic.basecode.ontology.jena.AbstractOntologyService
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- ubic.basecode.ontology.providers.AbstractOntologyService
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- ubic.basecode.ontology.providers.AbstractBaseCodeOntologyService
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- ubic.basecode.ontology.providers.FMAOntologyService
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- All Implemented Interfaces:
OntologyService
@Deprecated public class FMAOntologyService extends AbstractBaseCodeOntologyService
Deprecated.this ontology is inactive, use UBERON instead- Author:
- klc
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Nested Class Summary
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Nested classes/interfaces inherited from interface ubic.basecode.ontology.providers.OntologyService
OntologyService.InferenceMode, OntologyService.LanguageLevel
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Field Summary
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Fields inherited from class ubic.basecode.ontology.jena.AbstractOntologyService
log
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Constructor Summary
Constructors Constructor Description FMAOntologyService()
Deprecated.
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Method Summary
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Methods inherited from class ubic.basecode.ontology.providers.AbstractBaseCodeOntologyService
getCacheName, getOntologyName, getOntologyUrl, isOntologyEnabled
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Methods inherited from class ubic.basecode.ontology.jena.AbstractOntologyService
cancelInitializationThread, findIndividuals, findResources, findTerm, findUsingAlternativeId, getAdditionalPropertyUris, getAllURIs, getChildren, getDescription, getExcludedWordsFromStemming, getInferenceMode, getLanguageLevel, getName, getParents, getProcessImports, getResource, getTerm, getTermIndividuals, index, initialize, initialize, isEnabled, isInitializationThreadAlive, isInitializationThreadCancelled, isOntologyLoaded, isSearchEnabled, loadModel, loadModelFromStream, loadTermsInNameSpace, setAdditionalPropertyUris, setExcludedWordsFromStemming, setInferenceMode, setLanguageLevel, setProcessImports, setSearchEnabled, startInitializationThread, toString, waitForInitializationThread
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Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
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Methods inherited from interface ubic.basecode.ontology.providers.OntologyService
findIndividuals, findResources, findTerm, getChildren, getParents
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