All Classes
- AbstractBaseCodeOntologyService
- AbstractFilter
- AbstractGraph
- AbstractGraphNode
- AbstractLevelFilter
- AbstractMatrix
- AbstractMatrix3D
- AbstractMatrixReader
- AbstractOntologyService
- AbstractOntologyService
- AbstractRClient
- AffymetrixProbeNameFilter
- AnnotationProperty
- AnnotatorClient
- AnnotatorResponse
- AnovaEffect
- AnovaResult
- BatchIterator
- BinaryTree
- BinaryTreeNode
- BitUtil
- Blas
- BrowserLauncher
- ByteArrayConverter
- CellLineOntologyService
- CellTypeOntologyService
- ChainedStatement
- ChainedStatementObject
- CharacteristicStatement
- ChebiOntologyService
- ClassStatement
- ColorMap
- ColorMatrix
- CompressedBitMatrix
- CompressedSparseDoubleMatrix
- Configuration
- ConfigUtils
- Constants
- CorrelationEffectMetaAnalysis
- CorrelationStats
- CountingMap
- CreateSpreadSheet
- DataStatement
- DatatypeProperty
- DateUtil
- DenseDouble3dMatrix
- DenseDoubleMatrix
- DenseDoubleMatrix1D
- DenseObject3DMatrix
- DensityGenerator
- DescriptiveWithMissing
- DesignMatrix
- DirectedGraph
- DirectedGraphNode
- Dirichlet
- DiseaseOntologyService
- Distance
- DoubleAddingMap
- DoubleMatrix
- DoubleMatrix3D
- DoubleMatrixFactory
- DoubleMatrixReader
- DoublePoint
- Dqrsl
- ExcelUtil
- ExperimentalFactorOntologyService
- FastRowAccessDoubleMatrix
- FileTools
- Filter
- FMAOntologyService
- GenericAnovaResult
- GenericOntologyService
- GenericStreamConsumer
- Graph
- GraphNode
- Histogram
- HistogramReader
- HistogramSampler
- HistogramWriter
- HTest
- HumanDevelopmentOntologyService
- HumanPhenotypeOntologyService
- IAO
- InstanceStatement
- IntegerMatrix
- ItemLevelFilter
- JGradientBar
- JRIClient
- KruskalWallis
- KSTest
- LeastSquaresFit
- LinearModelSummary
- Link
- MammalianPhenotypeOntologyService
- MapReader
- MathUtil
- Matrix2D
- Matrix3D
- MatrixDisplay
- MatrixNormalizer
- MatrixRowStats
- MatrixStats
- MatrixUtil
- MatrixWriter
- MeanDifferenceMetaAnalysis
- MeanVarianceEstimator
- MedicOntologyService
- MetaAnalysis
- ModeratedTstat
- MouseDevelopmentOntologyService
- MultipleTestCorrection
- NetUtils
- NIFSTDOntologyService
- NormalProbabilityComputer
- ObiService
- ObjectMatrix
- ObjectMatrixImpl
- ObjectProperty
- OmimAnnotatorClient
- OneWayAnovaResult
- OntologyCardinalityRestriction
- OntologyCardinalityRestriction.CardinalityType
- OntologyClassRestriction
- OntologyDatatypeRestriction
- OntologyIndividual
- OntologyModel
- OntologyProperty
- OntologyResource
- OntologyRestriction
- OntologySearchException
- OntologySearchResult
- OntologyService
- OntologyService.InferenceMode
- OntologyService.LanguageLevel
- OntologyTerm
- OntologyTermSimple
- ParameterGrabber
- ParamKeeper
- ParamSpreadSheet
- Point
- PrecisionRecall
- PrettyPrinter
- PrimitiveMatrix
- ProbabilityComputer
- QRDecomposition
- RandomChooser
- Rank
- RCDoubleMatrix1D
- RClient
- RConnectionFactory
- RegressionTesting
- ROC
- RowAbsentFilter
- RowLevelFilter
- RowMissingFilter
- RowNameFilter
- RServeClient
- SequenceOntologyService
- SingularValueDecomposition
- Smooth
- SparseDoubleMatrix
- SparseDoubleMatrixReader
- SparseRaggedDoubleMatrix
- SparseRaggedMatrixReader
- SpecFunc
- SpreadSheetFilter
- SpreadSheetSchema
- SQLUtils
- Stats
- StatusDebugLogger
- StatusStderr
- StatusViewer
- StringConverter
- StringDistance
- StringMatrix
- StringMatrixReader
- StringToStringSetMap
- StringUtil
- TwoWayAnovaResult
- UberonOntologyService
- UndirectedGraphNode
- UniformDensityComputer
- UniformProbabilityComputer
- UnitsOntologyService
- Util
- Visitable
- Wilcoxon
- Wishart