Package ubic.gemma.cli.options

Class CellMetadataFileOptionValue

java.lang.Object

ubic.gemma.cli.options.DataFileOptionValue

ubic.gemma.cli.options.CellMetadataFileOptionValue

public class CellMetadataFileOptionValue
extends DataFileOptionValue

Options to write cell metadata file.

Rows are cells and columns are cell metadata.

Author:

poirigui

Field Summary

Fields inherited from class ubic.gemma.cli.options.DataFileOptionValue

outputDir, outputFile, standardLocation, standardOutput

Constructor Summary

Constructors

Constructor	Description
CellMetadataFileOptionValue(boolean standardLocation, boolean standardOutput, Path outputFile, Path outputDir, boolean separateSampleFromAssaysIdentifiers, boolean useBioAssayIds, boolean useRawColumnNames, String forceOption, boolean force)
CellMetadataFileOptionValue(DataFileOptionValue dfov, boolean separateSampleFromAssaysIdentifiers, boolean useBioAssayIds, boolean useRawColumnNames)

Method Summary

Modifier and Type	Method	Description
boolean	isSeparateSampleFromAssaysIdentifiers()
boolean	isUseBioAssayIds()
boolean	isUseRawColumnNames()

Methods inherited from class ubic.gemma.cli.options.DataFileOptionValue

getForceOption, getOutputDir, getOutputFile, getOutputFile, isForce, isStandardLocation, isStandardOutput

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

CellMetadataFileOptionValue

public CellMetadataFileOptionValue(DataFileOptionValue dfov,
 boolean separateSampleFromAssaysIdentifiers,
 boolean useBioAssayIds,
 boolean useRawColumnNames)

CellMetadataFileOptionValue

public CellMetadataFileOptionValue(boolean standardLocation,
 boolean standardOutput,
 @Nullable
 Path outputFile,
 @Nullable
 Path outputDir,
 boolean separateSampleFromAssaysIdentifiers,
 boolean useBioAssayIds,
 boolean useRawColumnNames,
 @Nullable
 String forceOption,
 boolean force)

Method Details

isSeparateSampleFromAssaysIdentifiers

public boolean isSeparateSampleFromAssaysIdentifiers()

isUseBioAssayIds

public boolean isUseBioAssayIds()

isUseRawColumnNames

public boolean isUseRawColumnNames()