Class CellIdOverlapBioAssayMapper

java.lang.Object

ubic.gemma.core.loader.util.mapper.MapBasedEntityMapper<BioAssay>

ubic.gemma.core.loader.util.mapper.CellIdOverlapBioAssayMapper

All Implemented Interfaces:

BioAssayMapper, EntityMapper<BioAssay>

public class CellIdOverlapBioAssayMapper
extends MapBasedEntityMapper<BioAssay>
implements BioAssayMapper

Strategy for mapping sample name to BioAssay that relies on overlapping cell IDs.

Author:

poirigui

Nested Class Summary

Nested classes/interfaces inherited from interface EntityMapper

EntityMapper.MappingStatistics, EntityMapper.StatefulEntityMapper<T>

Constructor Summary

Constructors

Constructor	Description
CellIdOverlapBioAssayMapper(Map<BioAssay, Set<String>> bioAssayToCellIds, Map<String, Set<String>> sampleNameToCellIds)

Method Summary

Methods inherited from class MapBasedEntityMapper

forCandidates, getName, processIdentifier

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface BioAssayMapper

forCandidates

Methods inherited from interface EntityMapper

contains, containsAny, forCandidates, getMappingStatistics, getName, matchAll, matchAll, matchOne, matchOne

Constructor Details

CellIdOverlapBioAssayMapper

public CellIdOverlapBioAssayMapper(Map<BioAssay, Set<String>> bioAssayToCellIds,
 Map<String, Set<String>> sampleNameToCellIds)