Class ContrastResultValueObject

java.lang.Object

ubic.gemma.model.common.IdentifiableValueObject<ContrastResult>

ubic.gemma.model.analysis.expression.diff.ContrastResultValueObject

All Implemented Interfaces:

Serializable, Identifiable

public class ContrastResultValueObject
extends IdentifiableValueObject<ContrastResult>

Represents a contrast result.

Author:

poirigui

See Also:

• Serialized Form

Field Summary

Fields inherited from class IdentifiableValueObject

id

Constructor Summary

Constructors

Constructor	Description
ContrastResultValueObject()
ContrastResultValueObject(ContrastResult contrastResult, boolean includeFactorValue)	Create a contrast value object from a given ContrastResult.

Method Summary

Modifier and Type	Method	Description
Double	getCoefficient()
FactorValueBasicValueObject	getFactorValue()
Long	getFactorValueId()
Double	getLogFoldChange()
Double	getPvalue()	The four contrast statistics are rounded to RoundingUtils.JSON_SIGNIFICANT_DIGITS significant digits on the way out; see DifferentialExpressionAnalysisResultValueObject for why significant digits and why at serialization time rather than in the constructor.
FactorValueBasicValueObject	getSecondFactorValue()
Long	getSecondFactorValueId()
Double	getTStat()
void	setCoefficient(Double coefficient)
void	setFactorValue(FactorValueBasicValueObject factorValue)
void	setFactorValueId(Long factorValueId)
void	setLogFoldChange(Double logFoldChange)
void	setPvalue(Double pvalue)	The four contrast statistics are rounded to RoundingUtils.JSON_SIGNIFICANT_DIGITS significant digits on the way out; see DifferentialExpressionAnalysisResultValueObject for why significant digits and why at serialization time rather than in the constructor.
void	setSecondFactorValue(FactorValueBasicValueObject secondFactorValue)
void	setSecondFactorValueId(Long secondFactorValueId)
void	setTStat(Double tStat)
String	toString()

Methods inherited from class IdentifiableValueObject

canEqual, equals, getId, hashCode, setId

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Details

ContrastResultValueObject

public ContrastResultValueObject()

ContrastResultValueObject

public ContrastResultValueObject(ContrastResult contrastResult,
 boolean includeFactorValue)

Create a contrast value object from a given ContrastResult.

Method Details

getPvalue

@Nullable
public Double getPvalue()

The four contrast statistics are rounded to RoundingUtils.JSON_SIGNIFICANT_DIGITS significant digits on the way out; see DifferentialExpressionAnalysisResultValueObject for why significant digits and why at serialization time rather than in the constructor.

getTStat

@Nullable
public Double getTStat()

getCoefficient

@Nullable
public Double getCoefficient()

getLogFoldChange

@Nullable
public Double getLogFoldChange()

getFactorValueId

public Long getFactorValueId()

getFactorValue

public FactorValueBasicValueObject getFactorValue()

getSecondFactorValueId

public Long getSecondFactorValueId()

getSecondFactorValue

public FactorValueBasicValueObject getSecondFactorValue()

setPvalue

public void setPvalue(@Nullable
 Double pvalue)

The four contrast statistics are rounded to RoundingUtils.JSON_SIGNIFICANT_DIGITS significant digits on the way out; see DifferentialExpressionAnalysisResultValueObject for why significant digits and why at serialization time rather than in the constructor.

setTStat

public void setTStat(@Nullable
 Double tStat)

setCoefficient

public void setCoefficient(@Nullable
 Double coefficient)

setLogFoldChange

public void setLogFoldChange(@Nullable
 Double logFoldChange)

setFactorValueId

public void setFactorValueId(Long factorValueId)

setFactorValue

public void setFactorValue(FactorValueBasicValueObject factorValue)

setSecondFactorValueId

public void setSecondFactorValueId(Long secondFactorValueId)

setSecondFactorValue

public void setSecondFactorValue(FactorValueBasicValueObject secondFactorValue)

toString

public String toString()

Overrides:

toString in class IdentifiableValueObject<ContrastResult>