Uses of Class
ubic.gemma.model.common.IdentifiableValueObject

Packages that use IdentifiableValueObject

Package	Description
ubic.gemma.core.search
ubic.gemma.model.analysis
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.blacklist
ubic.gemma.model.common
ubic.gemma.model.common.auditAndSecurity
ubic.gemma.model.common.auditAndSecurity.curation
ubic.gemma.model.common.description
ubic.gemma.model.common.measurement
ubic.gemma.model.common.quantitationtype
ubic.gemma.model.common.search
ubic.gemma.model.expression.arrayDesign
ubic.gemma.model.expression.bioAssay
ubic.gemma.model.expression.bioAssayData
ubic.gemma.model.expression.biomaterial
ubic.gemma.model.expression.designElement
ubic.gemma.model.expression.experiment
ubic.gemma.model.genome
ubic.gemma.model.genome.gene
ubic.gemma.model.genome.sequenceAnalysis
ubic.gemma.persistence.service
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.util

Uses of IdentifiableValueObject in ubic.gemma.core.search

Methods in ubic.gemma.core.search with type parameters of type IdentifiableValueObject

Modifier and Type	Method	Description
<T extends Identifiable, U extends IdentifiableValueObject<T>> SearchResult<U>	SearchService.loadValueObject(SearchResult<T> searchResult)	Convert a SearchResult to its VO flavour.
<T extends Identifiable, U extends IdentifiableValueObject<T>> SearchResult<U>	SearchServiceImpl.loadValueObject(SearchResult<T> searchResult)

Methods in ubic.gemma.core.search that return types with arguments of type IdentifiableValueObject

Modifier and Type	Method	Description
List<SearchResult<? extends IdentifiableValueObject<?>>>	SearchService.loadValueObjects(Collection<SearchResult<?>> searchResults)	Convert a collection of SearchResult to their VO flavours.
List<SearchResult<? extends IdentifiableValueObject<?>>>	SearchServiceImpl.loadValueObjects(Collection<SearchResult<?>> searchResults)

Method parameters in ubic.gemma.core.search with type arguments of type IdentifiableValueObject

Modifier and Type	Method	Description
void	SearchServiceImpl.canConvertFromId(Class<? extends IdentifiableValueObject<?>> to)

Uses of IdentifiableValueObject in ubic.gemma.model.analysis

Subclasses of IdentifiableValueObject in ubic.gemma.model.analysis

Modifier and Type	Class	Description
class	AnalysisResultSetValueObject<K extends AnalysisResult,R extends AnalysisResultSet<K>>	Exposes an AnalysisResultSet to the public API.
class	AnalysisResultValueObject<A extends AnalysisResult>	Wraps an AnalysisResult to expose it on the public API.
class	AnalysisValueObject<T extends Analysis>
class	CellTypeAssignmentValueObject
class	ProtocolValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.analysis.expression.diff

Subclasses of IdentifiableValueObject in ubic.gemma.model.analysis.expression.diff

Modifier and Type	Class	Description
class	ContrastResultValueObject	Represents a contrast result.
class	DifferentialExpressionAnalysisResultSetValueObject	Wraps an ExpressionAnalysisResultSet and expose it to the public API.
class	DifferentialExpressionAnalysisResultValueObject	Unlike DiffExResultSetSummaryValueObject, this value object is meant for the public API.
class	DifferentialExpressionAnalysisValueObject	Summary of a differential expression analysis

Uses of IdentifiableValueObject in ubic.gemma.model.blacklist

Subclasses of IdentifiableValueObject in ubic.gemma.model.blacklist

Modifier and Type	Class	Description
class	BlacklistedValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.common

Constructors in ubic.gemma.model.common with parameters of type IdentifiableValueObject

Modifier	Constructor	Description
protected	IdentifiableValueObject(IdentifiableValueObject<O> vo)	Copy constructor.

Uses of IdentifiableValueObject in ubic.gemma.model.common.auditAndSecurity

Subclasses of IdentifiableValueObject in ubic.gemma.model.common.auditAndSecurity

Modifier and Type	Class	Description
class	AuditEventValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.common.auditAndSecurity.curation

Subclasses of IdentifiableValueObject in ubic.gemma.model.common.auditAndSecurity.curation

Modifier and Type	Class	Description
class	AbstractCuratableValueObject<C extends Curatable>	Created by tesarst on 07/03/17.
class	CurationDetailsValueObject	Value object exposing CurationDetails over the REST API.

Uses of IdentifiableValueObject in ubic.gemma.model.common.description

Subclasses of IdentifiableValueObject in ubic.gemma.model.common.description

Modifier and Type	Class	Description
class	AnnotationValueObject
class	BibliographicReferenceValueObject	represents a BibliographicReferenceValueObject when this value object is needed in core, the same value object exists in web
class	CharacteristicValueObject	Value object representation of a Characteristic.
class	DatabaseEntryValueObject	ValueObject for database entry
class	ExternalDatabaseValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.common.measurement

Subclasses of IdentifiableValueObject in ubic.gemma.model.common.measurement

Modifier and Type	Class	Description
class	MeasurementValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.common.quantitationtype

Subclasses of IdentifiableValueObject in ubic.gemma.model.common.quantitationtype

Modifier and Type	Class	Description
class	QuantitationTypeValueObject	Value object for the QuantitationType.

Uses of IdentifiableValueObject in ubic.gemma.model.common.search

Classes in ubic.gemma.model.common.search with type parameters of type IdentifiableValueObject

Modifier and Type	Class	Description
final class	SearchResultValueObject<T extends IdentifiableValueObject<?>>

Methods in ubic.gemma.model.common.search that return IdentifiableValueObject

Modifier and Type	Method	Description
IdentifiableValueObject<?>	SearchResultValueObject.getResultObject()

Uses of IdentifiableValueObject in ubic.gemma.model.expression.arrayDesign

Subclasses of IdentifiableValueObject in ubic.gemma.model.expression.arrayDesign

Modifier and Type	Class	Description
class	ArrayDesignValueObject	Value object for quickly displaying varied information about Array Designs.

Uses of IdentifiableValueObject in ubic.gemma.model.expression.bioAssay

Subclasses of IdentifiableValueObject in ubic.gemma.model.expression.bioAssay

Modifier and Type	Class	Description
class	BioAssayValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.expression.bioAssayData

Subclasses of IdentifiableValueObject in ubic.gemma.model.expression.bioAssayData

Modifier and Type	Class	Description
class	BioAssayDimensionValueObject
class	BooleanVectorValueObject	Value object for a BulkExpressionDataVector containing booleans.
class	CellLevelCharacteristicsValueObject
class	DataVectorValueObject	Base class for value objects of BulkExpressionDataVector.
class	DoubleVectorValueObject	Value object for a BulkExpressionDataVector containing doubles.
class	SingleCellDimensionValueObject	Value object for a single-cell dimension.
class	SlicedDoubleVectorValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.expression.biomaterial

Subclasses of IdentifiableValueObject in ubic.gemma.model.expression.biomaterial

Modifier and Type	Class	Description
class	BioMaterialValueObject

Methods in ubic.gemma.model.expression.biomaterial that return types with arguments of type IdentifiableValueObject

Modifier and Type	Method	Description
Collection<? extends IdentifiableValueObject>	BioMaterialValueObject.getFactorValueObjects()	Deprecated. use BioMaterialValueObject.getFactorValues()
Collection<? extends IdentifiableValueObject>	BioMaterialValueObject.getFactorValues()

Uses of IdentifiableValueObject in ubic.gemma.model.expression.designElement

Subclasses of IdentifiableValueObject in ubic.gemma.model.expression.designElement

Modifier and Type	Class	Description
class	CompositeSequenceValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.expression.experiment

Subclasses of IdentifiableValueObject in ubic.gemma.model.expression.experiment

Modifier and Type	Class	Description
class	AbstractFactorValueValueObject	The bare minimum to represent a factor value.
class	ExperimentalDesignValueObject	Full structural representation of an ExperimentalDesign: factors, their factor values (with statements carrying stable database IDs), and the assignment of biomaterials to factor values.
class	ExperimentalFactorValueObject
class	ExpressionExperimentDetailsValueObject
class	ExpressionExperimentSetValueObject
class	ExpressionExperimentSubsetValueObject
class	ExpressionExperimentValueObject
class	FactorValueBasicValueObject	Each factorvalue can be associated with multiple characteristics (or with a measurement).
class	FactorValueValueObject	Deprecated. aim towards using the FactorValueBasicValueObject.
class	FreeTextExpressionExperimentResultsValueObject
class	GeeqAdminValueObject	Represents administrative geeq information.
class	GeeqValueObject	Represents publicly available geeq information
class	SessionBoundExpressionExperimentSetValueObject
class	StatementValueObject	Represents a VO for a Statement, typically part of a FactorValueBasicValueObject.

Uses of IdentifiableValueObject in ubic.gemma.model.genome

Subclasses of IdentifiableValueObject in ubic.gemma.model.genome

Modifier and Type	Class	Description
class	PhysicalLocationValueObject	A very simple value object to represent a physical location
class	TaxonValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.genome.gene

Subclasses of IdentifiableValueObject in ubic.gemma.model.genome.gene

Modifier and Type	Class	Description
class	DatabaseBackedGeneSetValueObject
class	FreeTextGeneResultsValueObject	*
class	GeneProductValueObject
class	GeneSetValueObject	Represents a Gene group gene set
class	GeneValueObject
class	GOGroupValueObject
class	SessionBoundGeneSetValueObject

Uses of IdentifiableValueObject in ubic.gemma.model.genome.sequenceAnalysis

Subclasses of IdentifiableValueObject in ubic.gemma.model.genome.sequenceAnalysis

Modifier and Type	Class	Description
class	BioSequenceValueObject
class	BlatResultValueObject

Uses of IdentifiableValueObject in ubic.gemma.persistence.service

Classes in ubic.gemma.persistence.service with type parameters of type IdentifiableValueObject

Modifier and Type	Class	Description
class	AbstractCriteriaFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Partial implementation of FilteringVoEnabledDao based on the Hibernate Criteria API.
class	AbstractFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Base implementation for FilteringVoEnabledDao.
class	AbstractFilteringVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Base implementation for FilteringVoEnabledService.
class	AbstractNoopFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Base class to use to pretend to offer filtering, but actually supporting no filterable properties.
class	AbstractQueryFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Partial implementation of FilteringVoEnabledDao based on the Hibernate Query API.
class	AbstractVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Created by tesarst on 01/06/17.
class	AbstractVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Created by tesarst on 01/06/17.
interface	BaseVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Created by tesarst on 01/06/17.
interface	BaseVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Created by tesarst on 01/06/17.
interface	CachedFilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>
interface	FilteringVoEnabledDao<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Interface for VO-enabled DAO with filtering capabilities.
interface	FilteringVoEnabledService<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Interface VO-enabled service with filtering capabilities.

Uses of IdentifiableValueObject in ubic.gemma.persistence.service.common.auditAndSecurity

Classes in ubic.gemma.persistence.service.common.auditAndSecurity with type parameters of type IdentifiableValueObject

Modifier and Type	Interface	Description
interface	SecurableBaseVoEnabledService<C extends Securable,VO extends IdentifiableValueObject<C>>
interface	SecurableFilteringVoEnabledService<C extends Securable,VO extends IdentifiableValueObject<C>>	A base service for securable entities with filtering and VO capabilities.

Uses of IdentifiableValueObject in ubic.gemma.persistence.util

Classes in ubic.gemma.persistence.util with type parameters of type IdentifiableValueObject

Modifier and Type	Class	Description
class	ServiceBasedValueObjectConverter<O extends Identifiable,VO extends IdentifiableValueObject<O>>	Perform conversion to value object by entity, ID and collections of entities and IDs and also to entity by ID and collection of IDs.