Class BioAssaySet

java.lang.Object

ubic.gemma.model.common.AbstractIdentifiable

ubic.gemma.model.common.AbstractDescribable

ubic.gemma.model.common.auditAndSecurity.AbstractAuditable

ubic.gemma.model.analysis.Investigation

ubic.gemma.model.expression.experiment.BioAssaySet

All Implemented Interfaces:

Securable, Auditable, Securable, Describable, Identifiable

Direct Known Subclasses:

ExpressionExperiment, ExpressionExperimentSubSet

@Entity
public abstract class BioAssaySet
extends Investigation

Represents a set of BioAssays.

This is not associated with any actual data, and soley represents a logical grouping of "samples" that can be used for any purpose. These could be a published grouping, or a subset of samples from a published study.

The bioAssays association is declared independently on each concrete subclass — ExpressionExperiment stores them as a one-to-many on the BIO_ASSAY table, while ExpressionExperimentSubSet stores them via the BIO_ASSAYS2EXPRESSION_EXPERIMENT_SUB_SET many-to-many join table. The getter is abstract here so callers can target BioAssaySet polymorphically without forcing JPA to pick one mapping at the intermediate level.

See Also:

• ExpressionExperiment
• ExpressionExperimentSubSet

Constructor Summary

Constructors

Constructor	Description
BioAssaySet()

Method Summary

Modifier and Type	Method	Description
abstract Set<BioAssay>	getBioAssays()
abstract void	setBioAssays(Set<BioAssay> bioAssays)

Methods inherited from class Investigation

getCharacteristics, getOtherRelevantPublications, getOwner, getPrimaryPublication, getSourceMetadata, getSourceMetadataSchemaVersion, getWorkflowState, getWorkflowStateEnteredAt, setCharacteristics, setOtherRelevantPublications, setOwner, setPrimaryPublication, setSourceMetadata, setSourceMetadataSchemaVersion, setWorkflowState, setWorkflowStateEnteredAt

Methods inherited from class AbstractAuditable

getAuditTrail, setAuditTrail

Methods inherited from class AbstractDescribable

equals, getDescription, getName, hashCode, setDescription, setName, toString

Methods inherited from class AbstractIdentifiable

getId, setId

Methods inherited from class Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface Identifiable

getId

Methods inherited from interface Securable

getId

Constructor Details

BioAssaySet

public BioAssaySet()

Method Details

getBioAssays

public abstract Set<BioAssay> getBioAssays()

setBioAssays

public abstract void setBioAssays(Set<BioAssay> bioAssays)