Uses of Interface
ubic.gemma.model.expression.experiment.BioAssaySetValueObject

Packages that use BioAssaySetValueObject

Package	Description
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.expression.bioAssayData
ubic.gemma.model.expression.experiment
ubic.gemma.persistence.service.analysis.expression.diff

Uses of BioAssaySetValueObject in ubic.gemma.model.analysis.expression.diff

Methods in ubic.gemma.model.analysis.expression.diff that return BioAssaySetValueObject

Modifier and Type	Method	Description
BioAssaySetValueObject	DifferentialExpressionValueObject.getExpressionExperiment()

Methods in ubic.gemma.model.analysis.expression.diff with parameters of type BioAssaySetValueObject

Modifier and Type	Method	Description
void	DifferentialExpressionValueObject.setExpressionExperiment(BioAssaySetValueObject expressionExperiment)

Uses of BioAssaySetValueObject in ubic.gemma.model.expression.bioAssayData

Methods in ubic.gemma.model.expression.bioAssayData that return BioAssaySetValueObject

Modifier and Type	Method	Description
BioAssaySetValueObject	DataVectorValueObject.getExpressionExperiment()

Methods in ubic.gemma.model.expression.bioAssayData with parameters of type BioAssaySetValueObject

Modifier and Type	Method	Description
void	DataVectorValueObject.setExpressionExperiment(BioAssaySetValueObject expressionExperiment)

Uses of BioAssaySetValueObject in ubic.gemma.model.expression.experiment

Classes in ubic.gemma.model.expression.experiment that implement BioAssaySetValueObject

Modifier and Type	Class	Description
class	ExpressionExperimentDetailsValueObject
class	ExpressionExperimentSubsetValueObject
class	ExpressionExperimentValueObject

Uses of BioAssaySetValueObject in ubic.gemma.persistence.service.analysis.expression.diff

Methods in ubic.gemma.persistence.service.analysis.expression.diff that return types with arguments of type BioAssaySetValueObject

Modifier and Type	Method	Description
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultService.findByExperimentAnalyzed(Collection<? extends BioAssaySet> experimentsAnalyzed, boolean includeSubSets, double threshold, int limit)
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultServiceImpl.findByExperimentAnalyzed(Collection<? extends BioAssaySet> experimentsAnalyzed, boolean includeSubSets, double threshold, int limit)
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultService.findByGene(Gene gene, boolean useGene2Cs, boolean keepNonSpecificProbes)
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultService.findByGene(Gene gene, boolean useGene2Cs, boolean keepNonSpecificProbes, double threshold, int limit)
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultServiceImpl.findByGene(Gene gene, boolean useGene2Cs, boolean keepNonSpecificProbes)
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultServiceImpl.findByGene(Gene gene, boolean useGene2Cs, boolean keepNonSpecificProbes, double threshold, int limit)
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultService.findByGeneAndExperimentAnalyzed(Gene gene, boolean useGene2Cs, boolean keepNonSpecificProbes, Collection<? extends BioAssaySet> experimentsAnalyzed, boolean includeSubSets)
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultService.findByGeneAndExperimentAnalyzed(Gene gene, boolean useGene2Cs, boolean keepNonSpecificProbes, Collection<? extends BioAssaySet> experimentsAnalyzed, boolean includeSubSets, double threshold, int limit)
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultServiceImpl.findByGeneAndExperimentAnalyzed(Gene gene, boolean useGene2Cs, boolean keepNonSpecificProbes, Collection<? extends BioAssaySet> experimentsAnalyzed, boolean includeSubSets)
Map<BioAssaySetValueObject,List<DifferentialExpressionValueObject>>	DifferentialExpressionResultServiceImpl.findByGeneAndExperimentAnalyzed(Gene gene, boolean useGene2Cs, boolean keepNonSpecificProbes, Collection<? extends BioAssaySet> experimentsAnalyzed, boolean includeSubSets, double threshold, int limit)