Package ubic.gemma.core.search

Class SearchServiceIntegrationTest

java.lang.Object

org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

ubic.gemma.core.util.test.BaseTest

ubic.gemma.core.util.test.BaseIntegrationTest

ubic.gemma.core.util.test.BaseSpringContextTest

ubic.gemma.core.search.SearchServiceIntegrationTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

public class SearchServiceIntegrationTest
extends BaseSpringContextTest

Author:

kelsey

Field Summary

Fields

Modifier and Type	Field	Description
final NetworkAvailableRule	networkAvailableRule

Fields inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

externalDatabaseService, log, persisterHelper, rule, taxonService, testHelper

Fields inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

applicationContext, logger

Constructor Summary

Constructors

Constructor	Description
SearchServiceIntegrationTest()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	tearDown()
void	testGeneralSearch4Brain()	Tests that general search terms are resolved to their proper ontology terms and objects tagged with those terms are found, -- requires LARQ index.
void	testGeneUriSearch()	Tests that gene uris get handled correctly
void	testLoadValueObject()
void	testLoadValueObjects()
void	testSearchByBibRefIdProblems()
void	testSearchByBibRefIdProblemsB()
void	testURIChildSearch()	Test we find EE tagged with a child term that matches the given uri.
void	testURISearch()	Does the search engine correctly match the spinal cord URI and find objects directly tagged with that URI

Methods inherited from class ubic.gemma.core.util.test.BaseSpringContextTest

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class ubic.gemma.core.util.test.BaseIntegrationTest

setUpAuthentication, tearDownSecurityContext

Methods inherited from class org.springframework.test.context.junit4.AbstractJUnit4SpringContextTests

setApplicationContext

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Details

networkAvailableRule

public final NetworkAvailableRule networkAvailableRule

Constructor Details

SearchServiceIntegrationTest

public SearchServiceIntegrationTest()

Method Details

setUp

public void setUp()
           throws Exception

Throws:

Exception

tearDown

public void tearDown()

testGeneralSearch4Brain

@DirtiesContext
public void testGeneralSearch4Brain()
                             throws SearchException,
IOException

Tests that general search terms are resolved to their proper ontology terms and objects tagged with those terms are found, -- requires LARQ index.

Throws:

SearchException

IOException

testGeneUriSearch

public void testGeneUriSearch()
                       throws SearchException

Tests that gene uris get handled correctly

Throws:

SearchException

testSearchByBibRefIdProblems

@NetworkAvailable(url="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi")
public void testSearchByBibRefIdProblems()
                                  throws SearchException,
IOException

Throws:

SearchException

IOException

testSearchByBibRefIdProblemsB

@NetworkAvailable(url="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi")
public void testSearchByBibRefIdProblemsB()
                                   throws SearchException,
IOException

Throws:

SearchException

IOException

testURIChildSearch

@DirtiesContext
public void testURIChildSearch()
                        throws SearchException,
IOException

Test we find EE tagged with a child term that matches the given uri.

Throws:

SearchException

IOException

testURISearch

public void testURISearch()
                   throws SearchException

Does the search engine correctly match the spinal cord URI and find objects directly tagged with that URI

Throws:

SearchException

testLoadValueObject

public void testLoadValueObject()
                         throws SearchException

Throws:

SearchException

testLoadValueObjects

public void testLoadValueObjects()
                          throws SearchException

Throws:

SearchException