Gemma 2.0.0-alpha Test API

Packages

Package	Description
ubic.gemma.apps
ubic.gemma.cli.metrics
ubic.gemma.cli.util
ubic.gemma.cli.util.test
ubic.gemma.core.analysis.expression.diff
ubic.gemma.core.analysis.preprocess
ubic.gemma.core.analysis.preprocess.batcheffects
ubic.gemma.core.analysis.preprocess.convert
ubic.gemma.core.analysis.preprocess.detect
ubic.gemma.core.analysis.preprocess.filter
ubic.gemma.core.analysis.preprocess.slice
ubic.gemma.core.analysis.preprocess.svd
ubic.gemma.core.analysis.report
ubic.gemma.core.analysis.sequence
ubic.gemma.core.analysis.service
ubic.gemma.core.analysis.singleCell
ubic.gemma.core.analysis.singleCell.aggregate
ubic.gemma.core.analysis.stats
ubic.gemma.core.architecture
ubic.gemma.core.config
ubic.gemma.core.context
ubic.gemma.core.datastructure.matrix
ubic.gemma.core.datastructure.matrix.io
ubic.gemma.core.datastructure.sparse
ubic.gemma.core.geoscrape
ubic.gemma.core.goldenpath
ubic.gemma.core.job
ubic.gemma.core.job.progress
ubic.gemma.core.loader.association
ubic.gemma.core.loader.entrez
ubic.gemma.core.loader.entrez.pubmed
ubic.gemma.core.loader.expression
ubic.gemma.core.loader.expression.arrayDesign
ubic.gemma.core.loader.expression.cellxgene
ubic.gemma.core.loader.expression.geo
ubic.gemma.core.loader.expression.geo.fetcher
ubic.gemma.core.loader.expression.geo.fetcher2
ubic.gemma.core.loader.expression.geo.service
ubic.gemma.core.loader.expression.geo.singleCell
ubic.gemma.core.loader.expression.simple
ubic.gemma.core.loader.expression.singleCell
ubic.gemma.core.loader.expression.singleCell.transform
ubic.gemma.core.loader.expression.sra
ubic.gemma.core.loader.expression.ucsc.cellbrowser
ubic.gemma.core.loader.genome
ubic.gemma.core.loader.genome.gene
ubic.gemma.core.loader.genome.gene.ncbi
ubic.gemma.core.loader.genome.gene.ncbi.homology
ubic.gemma.core.loader.genome.taxon
ubic.gemma.core.loader.util
ubic.gemma.core.loader.util.anndata
ubic.gemma.core.loader.util.biomart
ubic.gemma.core.loader.util.fetcher
ubic.gemma.core.loader.util.hdf5
ubic.gemma.core.loader.util.mapper
ubic.gemma.core.logging
ubic.gemma.core.logging.log4j
ubic.gemma.core.mail
ubic.gemma.core.metrics
ubic.gemma.core.metrics.binder
ubic.gemma.core.ontology
ubic.gemma.core.ontology.ols
ubic.gemma.core.ontology.providers
ubic.gemma.core.ontology.providers.chebi
ubic.gemma.core.scheduler
ubic.gemma.core.search
ubic.gemma.core.search.indexer
ubic.gemma.core.search.source
ubic.gemma.core.security
ubic.gemma.core.security.acl
ubic.gemma.core.security.acl.afterinvocation
ubic.gemma.core.security.acl.domain
ubic.gemma.core.security.acl.voter
ubic.gemma.core.security.audit
ubic.gemma.core.security.authentication
ubic.gemma.core.security.authorization
ubic.gemma.core.security.authorization.acl
ubic.gemma.core.security.concurrent
ubic.gemma.core.security.principal
ubic.gemma.core.security.util
ubic.gemma.core.tasks.analysis.diffex
ubic.gemma.core.util
ubic.gemma.core.util.concurrent
ubic.gemma.core.util.locking
ubic.gemma.core.util.math
ubic.gemma.core.util.math.linearmodels
ubic.gemma.core.util.matrix.datafilter
ubic.gemma.core.util.runtime
ubic.gemma.core.util.test
ubic.gemma.core.util.test.category
ubic.gemma.core.util.test.fixture
ubic.gemma.core.visualization
ubic.gemma.core.visualization.cellbrowser
ubic.gemma.model.analysis
ubic.gemma.model.analysis.expression.diff
ubic.gemma.model.common
ubic.gemma.model.common.auditAndSecurity.curation
ubic.gemma.model.common.auditAndSecurity.eventType
ubic.gemma.model.common.description
ubic.gemma.model.common.quantitationtype
ubic.gemma.model.expression.bioAssay
ubic.gemma.model.expression.bioAssayData
ubic.gemma.model.expression.biomaterial
ubic.gemma.model.expression.experiment
ubic.gemma.model.genome
ubic.gemma.model.genome.biosequence
ubic.gemma.model.util
ubic.gemma.persistence.audit
ubic.gemma.persistence.cache
ubic.gemma.persistence.hibernate
ubic.gemma.persistence.initialization
ubic.gemma.persistence.persister
ubic.gemma.persistence.retry
ubic.gemma.persistence.service
ubic.gemma.persistence.service.analysis.expression
ubic.gemma.persistence.service.analysis.expression.diff
ubic.gemma.persistence.service.analysis.expression.pca
ubic.gemma.persistence.service.analysis.expression.sampleCoexpression
ubic.gemma.persistence.service.blacklist
ubic.gemma.persistence.service.common.auditAndSecurity
ubic.gemma.persistence.service.common.auditAndSecurity.curation
ubic.gemma.persistence.service.common.description
ubic.gemma.persistence.service.common.quantitationtype
ubic.gemma.persistence.service.expression.arrayDesign
ubic.gemma.persistence.service.expression.bioAssay
ubic.gemma.persistence.service.expression.bioAssayData
ubic.gemma.persistence.service.expression.biomaterial
ubic.gemma.persistence.service.expression.designElement
ubic.gemma.persistence.service.expression.experiment
ubic.gemma.persistence.service.genome
ubic.gemma.persistence.service.genome.gene
ubic.gemma.persistence.service.genome.sequenceAnalysis
ubic.gemma.persistence.service.maintenance
ubic.gemma.persistence.util
ubic.gemma.rest
ubic.gemma.rest.analytics.ga4
ubic.gemma.rest.providers
ubic.gemma.rest.ranking
ubic.gemma.rest.serializers
ubic.gemma.rest.servlet
ubic.gemma.rest.util
ubic.gemma.rest.util.args