Package ubic.gemma.core.analysis.expression.diff

@NonNullApi package ubic.gemma.core.analysis.expression.diff

Classes

Class	Description
AnalysisExceptionTest	Unit tests for the differential-expression analysis exception family: AnalysisException (base) and its sub-types (MeanVarianceFailureException).
BaselineDetectionTest
BaselineSelectionTest
ContinuousVariableDiffExTest
DetectFactorBaselineTest
DifferentialExpressionAnalysisFilterTest
DifferentialExpressionAnalyzerServiceTest
DiffExAnalyzerUtilsRNameTest	Unit tests for the R-friendly name helpers in DiffExAnalyzerUtils + the interaction-term formatter.
DiffExAnalyzerUtilsSampleSelectionTest	Samples marked DE_Exclude and samples whose assays are flagged as outliers must leave the analysis before anything is decided from the sample set.
DiffExGeneWarmupServiceTest	Pure-mock unit test for DiffExGeneWarmupService.
DiffExMetaAnalyzerServiceTest	This is a test that requires complex setup: loading several data sets, information on genes, array design annotations, conducting differential expression, and finally the meta-analysis.
DiffExTest	Tests added to check various cases of differential expression analysis.
DiffExWithInvalidInteraction2Test	for bug 3927
DiffExWithInvalidInteractionTest
EmptySubSetIsSkippedTest	An arm of the subset factor that no analyzed sample carries is skipped, not a fatal condition for the experiment.
IncompleteFactorBaselineTest	A factor dropped for missing values must not be left behind in the baseline map.
LowVarianceDataTest	Test based on GSE19480, see bug 3177
NoSubSetAnalysisIsNotSuccessTest	Producing no analysis at all is a failure of the experiment, not a quiet empty result.
SubsettedAnalysis2Test
SubsettedAnalysis3Test
SubsettedAnalysis4Test	This test covers subset analysis with pre-existing EE subset structure.
SubsettedAnalysisFactorConsistencyTest	A subset analysis has to describe itself with the factors it actually modelled.
TwoWayAnovaWithInteractionsTest2
TwoWayAnovaWithInteractionTest2	Test based on GSE8441