Class DifferentialExpressionAnalyzerServiceTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.util.test.BaseIntegrationTest5

ubic.gemma.core.util.test.BaseSpringContextTest5

ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest5

ubic.gemma.core.analysis.expression.diff.DifferentialExpressionAnalyzerServiceTest

@Disabled("These tests randomly fail on the CI")
@Tag("slow")
public class DifferentialExpressionAnalyzerServiceTest
extends AbstractGeoServiceTest5

Author:

keshav, paul

Field Summary

Fields inherited from class BaseSpringContextTest5

arrayDesignPersister, externalDatabaseService, log, persisterHelper, taxonService, testHelper

Constructor Summary

Constructors

Constructor	Description
DifferentialExpressionAnalyzerServiceTest()

Method Summary

Modifier and Type	Method	Description
void	tearDown()
void	testAnalyzeAndDelete()
void	testAnalyzeAndDeleteSpecificAnalysis()	Test for bug 2026, not a subsetted analysis.
void	testAnalyzeAndDeleteSpecificAnalysisWithSubset()	Tests running with a subset factor, then deleting.
void	testAnalyzeWithSubsetWhenOneIsNotUsableAndWithInteractionInTheOther()	Test inspired by bug 2605
void	testContinuousFactor()
void	testWritePValuesHistogram()

Methods inherited from class AbstractGeoServiceTest5

getTestFileBasePath, getTestFileBasePath

Methods inherited from class BaseSpringContextTest5

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class BaseIntegrationTest5

setUpAuthentication, tearDownSecurityContext

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

DifferentialExpressionAnalyzerServiceTest

public DifferentialExpressionAnalyzerServiceTest()

Method Details

tearDown

@AfterEach
public void tearDown()

testAnalyzeAndDeleteSpecificAnalysis

@Test
public void testAnalyzeAndDeleteSpecificAnalysis()
                                          throws Exception

Test for bug 2026, not a subsetted analysis.

Throws:

Exception

testAnalyzeAndDeleteSpecificAnalysisWithSubset

@Test
public void testAnalyzeAndDeleteSpecificAnalysisWithSubset()
                                                    throws Exception

Tests running with a subset factor, then deleting.

Throws:

Exception

testAnalyzeAndDelete

@Test
@Disabled
public void testAnalyzeAndDelete()
                          throws Exception

Throws:

Exception

testAnalyzeWithSubsetWhenOneIsNotUsableAndWithInteractionInTheOther

@Test
public void testAnalyzeWithSubsetWhenOneIsNotUsableAndWithInteractionInTheOther()
                                                                         throws Exception

Test inspired by bug 2605

Throws:

Exception

testWritePValuesHistogram

@Test
public void testWritePValuesHistogram()
                               throws Exception

Throws:

Exception

testContinuousFactor

@Test
public void testContinuousFactor()
                          throws Exception

Throws:

Exception