Class AbstractGeoServiceTest5

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.util.test.BaseIntegrationTest5

ubic.gemma.core.util.test.BaseSpringContextTest5

ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest5

Direct Known Subclasses:

ArrayDesignSequenceProcessorTest, BaselineDetectionTest, BatchInfoPopulationServiceIntegrationTest, CompositeSequenceGeneMapperServiceFastTest, CompositeSequenceGeneMapperServiceTest, ContinuousVariableDiffExTest, DataUpdaterTest, DifferentialExpressionAnalyzerServiceTest, DiffExMetaAnalyzerServiceTest, DiffExTest, DiffExWithInvalidInteraction2Test, DiffExWithInvalidInteractionTest, ExonArrayDataAddIntegrationTest, ExperimentalDesignWriterTest, ExpressionExperimentBatchCorrectionServiceTest, ExpressionExperimentPlatformSwitchTest, GeoDatasetServiceTest, GeoPlatformServiceTest, LowVarianceDataTest, MeanVarianceServiceTest, ProcessedExpressionDataCreateServiceTest, ProcessedExpressionDataVectorServiceTest, RawAndProcessedExpressionDataVectorServiceGeoTest, RNASeqBatchInfoPopulationTest, SubsettedAnalysis2Test, SubsettedAnalysis3Test, SVDServiceImplTest, TwoChannelExpressionDataDoubleMatrixTest, TwoWayAnovaWithInteractionsTest2, VectorMergingServiceTest

public abstract class AbstractGeoServiceTest5
extends BaseSpringContextTest5

JUnit 5 parallel of AbstractGeoServiceTest, extending the Jupiter BaseSpringContextTest5 base. Used while the GEO-service test family migrates piecewise to Jupiter.

Author:

pavlidis

Field Summary

Fields inherited from class BaseSpringContextTest5

arrayDesignPersister, externalDatabaseService, log, persisterHelper, taxonService, testHelper

Constructor Summary

Constructors

Constructor	Description
AbstractGeoServiceTest5()

Method Summary

Modifier and Type	Method	Description
protected String	getTestFileBasePath()
protected String	getTestFileBasePath(String subPath)

Methods inherited from class BaseSpringContextTest5

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class BaseIntegrationTest5

setUpAuthentication, tearDownSecurityContext

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AbstractGeoServiceTest5

public AbstractGeoServiceTest5()

Method Details

getTestFileBasePath

protected String getTestFileBasePath()
                              throws URISyntaxException

Throws:

URISyntaxException

getTestFileBasePath

protected String getTestFileBasePath(String subPath)
                              throws URISyntaxException

Throws:

URISyntaxException