Class MeanVarianceServiceTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.util.test.BaseIntegrationTest5

ubic.gemma.core.util.test.BaseSpringContextTest5

ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest5

ubic.gemma.core.analysis.preprocess.MeanVarianceServiceTest

@Tag("geo")
@ExtendWith(NetworkAvailableExtension.class)
public class MeanVarianceServiceTest
extends AbstractGeoServiceTest5

Author:

ptan

Field Summary

Fields inherited from class BaseSpringContextTest5

arrayDesignPersister, externalDatabaseService, log, persisterHelper, taxonService, testHelper

Constructor Summary

Constructors

Constructor	Description
MeanVarianceServiceTest()

Method Summary

Modifier and Type	Method	Description
void	after()
final void	testServiceCreateCountData()
final void	testServiceCreateExistingEe()
final void	testServiceCreateOneColor()
final void	testServiceCreateTwoColor()

Methods inherited from class AbstractGeoServiceTest5

getTestFileBasePath, getTestFileBasePath

Methods inherited from class BaseSpringContextTest5

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class BaseIntegrationTest5

setUpAuthentication, tearDownSecurityContext

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

MeanVarianceServiceTest

public MeanVarianceServiceTest()

Method Details

after

@AfterEach
public void after()

testServiceCreateTwoColor

@Test
@Tag("slow")
@NetworkAvailable(url="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi")
public final void testServiceCreateTwoColor()
                                     throws Exception

Throws:

Exception

testServiceCreateOneColor

@Test
@Tag("slow")
@NetworkAvailable(url="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi")
public final void testServiceCreateOneColor()
                                     throws Exception

Throws:

Exception

testServiceCreateCountData

@Test
@Tag("slow")
@NetworkAvailable(url="ftp://ftp.ncbi.nlm.nih.gov/geo/series/")
public final void testServiceCreateCountData()
                                      throws Exception

Throws:

Exception

testServiceCreateExistingEe

@Test
@Tag("slow")
@NetworkAvailable(url="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi")
public final void testServiceCreateExistingEe()
                                       throws Exception

Throws:

Exception