Uses of Class
ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest5

Packages that use AbstractGeoServiceTest5

Package	Description
ubic.gemma.core.analysis.expression.diff
ubic.gemma.core.analysis.preprocess
ubic.gemma.core.analysis.preprocess.batcheffects
ubic.gemma.core.analysis.preprocess.svd
ubic.gemma.core.analysis.service
ubic.gemma.core.datastructure.matrix.io
ubic.gemma.core.loader.expression
ubic.gemma.core.loader.expression.arrayDesign
ubic.gemma.core.loader.expression.geo.service
ubic.gemma.persistence.service.expression.bioAssayData

Uses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.expression.diff

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.expression.diff

Modifier and Type	Class	Description
class	BaselineDetectionTest
class	ContinuousVariableDiffExTest
class	DifferentialExpressionAnalyzerServiceTest
class	DiffExMetaAnalyzerServiceTest	This is a test that requires complex setup: loading several data sets, information on genes, array design annotations, conducting differential expression, and finally the meta-analysis.
class	DiffExTest	Tests added to check various cases of differential expression analysis.
class	DiffExWithInvalidInteraction2Test	for bug 3927
class	DiffExWithInvalidInteractionTest
class	LowVarianceDataTest	Test based on GSE19480, see bug 3177
class	SubsettedAnalysis2Test
class	SubsettedAnalysis3Test
class	TwoWayAnovaWithInteractionsTest2

Uses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.preprocess

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.preprocess

Modifier and Type	Class	Description
class	MeanVarianceServiceTest
class	ProcessedExpressionDataCreateServiceTest
class	TwoChannelExpressionDataDoubleMatrixTest
class	VectorMergingServiceTest	Tests loading, platform switch, vector merge, and complex deletion (in teardown)

Uses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.preprocess.batcheffects

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.preprocess.batcheffects

Modifier and Type	Class	Description
class	BatchInfoPopulationServiceIntegrationTest	Test fetching and loading the batch information from raw files.
class	ExpressionExperimentBatchCorrectionServiceTest
class	RNASeqBatchInfoPopulationTest

Uses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.preprocess.svd

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.preprocess.svd

Modifier and Type	Class	Description
class	SVDServiceImplTest

Uses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.service

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.core.analysis.service

Modifier and Type	Class	Description
class	CompositeSequenceGeneMapperServiceFastTest	Fast mock variant of CompositeSequenceGeneMapperServiceTest.
class	CompositeSequenceGeneMapperServiceTest	This test makes use of the ArrayDesignProbeMapperServiceImpl.

Uses of AbstractGeoServiceTest5 in ubic.gemma.core.datastructure.matrix.io

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.core.datastructure.matrix.io

Modifier and Type	Class	Description
class	ExperimentalDesignWriterTest

Uses of AbstractGeoServiceTest5 in ubic.gemma.core.loader.expression

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.core.loader.expression

Modifier and Type	Class	Description
class	DataUpdaterTest
class	ExonArrayDataAddIntegrationTest	Uses the Affy Power Tools, and full-sized data sets.
class	ExpressionExperimentPlatformSwitchTest	Switching of platforms that have no composite sequences.

Uses of AbstractGeoServiceTest5 in ubic.gemma.core.loader.expression.arrayDesign

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.core.loader.expression.arrayDesign

Modifier and Type	Class	Description
class	ArrayDesignSequenceProcessorTest

Uses of AbstractGeoServiceTest5 in ubic.gemma.core.loader.expression.geo.service

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.core.loader.expression.geo.service

Modifier and Type	Class	Description
class	GeoDatasetServiceTest	Test full procedure of loading GEO data, focus on corner cases.
class	GeoPlatformServiceTest	Tests of GeoPlatformService

Uses of AbstractGeoServiceTest5 in ubic.gemma.persistence.service.expression.bioAssayData

Subclasses of AbstractGeoServiceTest5 in ubic.gemma.persistence.service.expression.bioAssayData

Modifier and Type	Class	Description
class	ProcessedExpressionDataVectorServiceTest
class	RawAndProcessedExpressionDataVectorServiceGeoTest