Class ProcessedExpressionDataCreateServiceTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.core.util.test.BaseIntegrationTest5

ubic.gemma.core.util.test.BaseSpringContextTest5

ubic.gemma.core.loader.expression.geo.AbstractGeoServiceTest5

ubic.gemma.core.analysis.preprocess.ProcessedExpressionDataCreateServiceTest

@ExtendWith(NetworkAvailableExtension.class)
public class ProcessedExpressionDataCreateServiceTest
extends AbstractGeoServiceTest5

Author:

pavlidis

Field Summary

Fields inherited from class BaseSpringContextTest5

arrayDesignPersister, externalDatabaseService, log, persisterHelper, taxonService, testHelper

Constructor Summary

Constructors

Constructor	Description
ProcessedExpressionDataCreateServiceTest()

Method Summary

Modifier and Type	Method	Description
void	tearDown()
void	testComputeDevRankForExpressionExperimentB()
void	testComputeDevRankForExpressionExperimentMultiArrayWithGaps()	Three platforms, one sample was not run on GPL81.
void	testReorder()

Methods inherited from class AbstractGeoServiceTest5

getTestFileBasePath, getTestFileBasePath

Methods inherited from class BaseSpringContextTest5

addTestAnalyses, countRowsInTable, deleteFromTables, getJdbcTemplate, getNewTestPersistentCompleteExpressionExperiment, getTaxon, getTestNonPersistentBioSequence, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentArrayDesign, getTestPersistentBasicExpressionExperiment, getTestPersistentBasicExpressionExperiment, getTestPersistentBibliographicReference, getTestPersistentBioAssay, getTestPersistentBioAssay, getTestPersistentBioMaterial, getTestPersistentBioMaterial, getTestPersistentBioSequence, getTestPersistentBioSequence, getTestPersistentBioSequence2GeneProducts, getTestPersistentBlatResult, getTestPersistentBlatResult, getTestPersistentCompleteExpressionExperiment, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentCompleteExpressionExperimentWithSequences, getTestPersistentContact, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentDatabaseEntry, getTestPersistentExpressionExperiment, getTestPersistentExpressionExperiment, getTestPersistentGene, getTestPersistentGene, getTestPersistentGeneProduct, getTestPersistentQuantitationType, randomName, resetTestCollectionSize, runAsAdmin, runAsAgent, runAsAnonymous, runAsUser, runAsUser, setTestCollectionSize

Methods inherited from class BaseIntegrationTest5

setUpAuthentication, tearDownSecurityContext

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

ProcessedExpressionDataCreateServiceTest

public ProcessedExpressionDataCreateServiceTest()

Method Details

tearDown

@AfterEach
public void tearDown()

testComputeDevRankForExpressionExperimentB

@Test
@Tag("slow")
@Disabled("This test randomly fails, see https://github.com/PavlidisLab/Gemma/issues/1158")
public void testComputeDevRankForExpressionExperimentB()
                                                throws Exception

Throws:

Exception

testComputeDevRankForExpressionExperimentMultiArrayWithGaps

@Test
@Tag("slow")
@NetworkAvailable(url="https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi")
public void testComputeDevRankForExpressionExperimentMultiArrayWithGaps()
                                                                 throws Exception

Three platforms, one sample was not run on GPL81. It's 'Norm-1a', but the name we use for the sample is random.

Throws:

Exception

testReorder

@Test
@Disabled
@Tag("slow")
public void testReorder()
                 throws Exception

Throws:

Exception