Package ubic.gemma.rest

package ubic.gemma.rest

Related Packages

Package	Description
ubic.gemma.rest.providers
ubic.gemma.rest.ranking
ubic.gemma.rest.serializers
ubic.gemma.rest.servlet
ubic.gemma.rest.util

Classes

Class	Description
AdminWebServiceTest	Pure-Mockito tests for AdminWebService: cache list / clear / clear-named, Hibernate stats snapshot.
AnalysisResultSetsJerseyTest	Integration test for the result sets endpoint.
AnalysisResultSetsWebServiceCursorTest	Unit tests for the cursor-pagination branch added to AnalysisResultSetsWebService.getResultSets(DatasetArrayArg, DatabaseEntryArrayArg, FilterArg, OffsetArg, LimitArg, SortArg, CursorArg) for step 1i of CURSOR_PAGINATION_STEP1_PLAN.md.
AnalysisResultSetsWebServicePvalueDistributionTest	Unit tests for AnalysisResultSetsWebService.getPvalueDistribution(ExpressionAnalysisResultSetArg, int, String), which serves the stored PVALUE_DISTRIBUTION histogram rather than aggregating DIFFERENTIAL_EXPRESSION_ANALYSIS_RESULT (120.5 GB / ~1.57e9 rows on production) per request.
AnalysisResultSetsWebServiceTest
AnnotationSearchRankingStrategyTest	Pure-data tests for the three ranking strategies — no Spring, no Mockito beyond the input fixture.
AnnotationsRestTest	End-to-end checks for AnnotationsWebService.
AnnotationsUsageCountCacheTest	The per-URI corpus usage-count cache behind /annotations/search?rank=composite.
AnnotationsUsageCountCacheTest.ContextConfig
AnnotationsWebServiceTest
AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration
CompletionsWebServiceTest	Pure Mockito unit tests for CompletionsWebService.
DatasetsCurationCommitRestTest	End-to-end regression harness for the composite curation commit (PUT /datasets/{id}/curation) against a real (gemdtest) database — the persistence half the mocked DatasetsWebServiceTest can't reach.
DatasetsDiagnosticsRestTest	Integration tests for the diagnostics endpoints (mean-variance, sample-correlation, svd) on DatasetsWebService.
DatasetsFactorHintCommitRestTest	A design-commit factor item carrying ONLY gemmaId plus one relevance hint leaves everything else about the factor as it was: name, category, factor values and sample assignments.
DatasetsPlatformsRestTest	Integration tests for GET /datasets/{dataset}/platforms, in both modes, against a real (gemdtest) database.
DatasetsRestTest
DatasetsWebServiceAuditEventsCursorTest	Unit tests for the cursor-pagination branch added to DatasetsWebService.getDatasetAuditEvents(DatasetArg, CursorArg, LimitArg, boolean, boolean) as step 1q of CURSOR_PAGINATION_STEP1_PLAN.md.
DatasetsWebServiceBlacklistedCursorTest	Unit tests for the cursor-pagination branch added to DatasetsWebService.getBlacklistedDatasets(FilterArg, SortArg, OffsetArg, LimitArg, CursorArg) as step 1t of CURSOR_PAGINATION_STEP1_PLAN.md (the EE-targeted twin of step 1h's /platforms/blacklisted).
DatasetsWebServiceByIdsCursorTest	Unit tests for the cursor-pagination branch added to DatasetsWebService.getDatasetsByIds(DatasetArrayArg, FilterArg, OffsetArg, LimitArg, SortArg, CursorArg) as step 1w of CURSOR_PAGINATION_STEP1_PLAN.md.
DatasetsWebServiceExpressionLevelsForGeneCursorTest	Unit tests for the cursor-pagination branch added to DatasetsWebService.getDatasetsExpressionLevelsForGene(GeneArg, ubic.gemma.rest.util.args.QueryArg, FilterArg, OffsetArg, LimitArg, Boolean, ubic.gemma.rest.util.args.ExpLevelConsolidationArg, CursorArg, Boolean) and its taxon-scoped sibling, as step 1v of CURSOR_PAGINATION_STEP1_PLAN.md.
DatasetsWebServiceSamplesCursorTest	Unit tests for the cursor-pagination branch added to DatasetsWebService.getDatasetSamples(DatasetArg, QuantitationTypeArg, boolean, CursorArg, LimitArg, ExcludeArg, boolean) as step 1k of CURSOR_PAGINATION_STEP1_PLAN.md.
DatasetsWebServiceSubSetSamplesCursorTest	Unit tests for the cursor-pagination branch added to DatasetsWebService#getDatasetSubSetSamples(DatasetArg, Long, CursorArg, LimitArg) as step 1u of CURSOR_PAGINATION_STEP1_PLAN.md.
DatasetsWebServiceTest
DatasetsWebServiceTicketsBulkTest	Unit tests for DatasetsWebService.getDatasetTicketsBulk(DatasetsWebService.DatasetTicketsBulkRequest) — the bulk read behind the experiment list's "on a ticket" glyph.
DatasetsWebServiceTicketsCursorTest	Unit tests for the cursor-pagination branch added to DatasetsWebService.getDatasetTickets(DatasetArg, CursorArg, LimitArg) as step 1p of CURSOR_PAGINATION_STEP1_PLAN.md.
DatasetUpdateSummaryValueObjectTest	Pure-data tests for the lastUpdate label vocabulary — no Spring, no database.
DatasetVisualizationWebServiceTest	Unit tests for HeatmapDataService (the assembler that backs DatasetVisualizationWebService).
ExperimentSetsWebServiceTest	Pure Mockito tests for ExperimentSetsWebService: the resource → service wiring, and the guards that decide what reaches the service at all.
GeneWebServiceCursorTest	Unit tests for the cursor-pagination branch added to GeneWebService.getGenes(OffsetArg, LimitArg, CursorArg) as proof-of-concept for step 1b of CURSOR_PAGINATION_STEP1_PLAN.md.
GeneWebServiceOverviewTest	Pure-Mockito tests for the two gene-page additions on GeneWebService: GET /genes/{gene}/overview (the fully-populated VO replacing the legacy loadGeneDetails DWR) and GET /genes/{gene}/homologues.
GeneWebServiceProbesCursorTest	Unit tests for the cursor-pagination branch added to GeneWebService.getGeneProbes(GeneArg, OffsetArg, LimitArg, CursorArg, boolean) as step 1m of CURSOR_PAGINATION_STEP1_PLAN.md.
GeneWebServiceTest
GroupsWebServiceTest	Pure Mockito unit tests for GroupsWebService.
OpenApiTest
OpenApiWebServiceTest	Pin the invariant that /openapi.{json,yaml} serves the very OpenAPI instance held by the openApi bean — the instance OpenApiFactory decorates with the servers list, the FilterArg/SortArg examples and placeholder resolution.
PlatformsWebServiceBlacklistedCursorTest	Unit tests for the cursor-pagination branch added to PlatformsWebService.getBlacklistedPlatforms(FilterArg, SortArg, OffsetArg, LimitArg, CursorArg) as step 1h of CURSOR_PAGINATION_STEP1_PLAN.md.
PlatformsWebServiceByIdsCursorTest	Unit tests for the cursor-pagination branch added to PlatformsWebService#getPlatformsByIds(PlatformArrayArg, FilterArg, OffsetArg, LimitArg, SortArg, CursorArg) — the GET /platforms/{platform} variant (step 1x).
PlatformsWebServiceCursorTest	Unit tests for the cursor-pagination branch added to PlatformsWebService#getPlatforms(FilterArg, OffsetArg, LimitArg, SortArg, CursorArg) as proof-of-concept for step 1c of CURSOR_PAGINATION_STEP1_PLAN.md.
PlatformsWebServiceDatasetsCursorTest	Unit tests for the cursor-pagination branch added to PlatformsWebService.getPlatformDatasets(PlatformArg, OffsetArg, LimitArg, CursorArg) as step 1f of CURSOR_PAGINATION_STEP1_PLAN.md.
PlatformsWebServiceElementCursorTest	Unit tests for the cursor-pagination branch added to PlatformsWebService.getPlatformElement(PlatformArg, CompositeSequenceArrayArg, OffsetArg, LimitArg, CursorArg, boolean, boolean) as step 1j of CURSOR_PAGINATION_STEP1_PLAN.md.
PlatformsWebServiceElementGenesCursorTest	Unit tests for the cursor-pagination branch added to PlatformsWebService.getPlatformElementGenes(PlatformArg, CompositeSequenceArg, OffsetArg, LimitArg, CursorArg) as step 1l of CURSOR_PAGINATION_STEP1_PLAN.md.
PlatformsWebServiceElementsCursorTest	Unit tests for the cursor-pagination branch added to PlatformsWebService.getPlatformElements(PlatformArg, OffsetArg, LimitArg, CursorArg, boolean, boolean, QueryArg, FilterArg) as step 1e of CURSOR_PAGINATION_STEP1_PLAN.md.
PlatformsWebServiceMappingSummaryTest	Pure-Mockito test for the GET /platforms/{platform}/elements/{probe}/mappingSummary endpoint added to PlatformsWebService.
PlatformsWebServicePslTrackTest	Pure-Mockito test for GET /platforms/{platform}/elements/{probe}/pslTrack, which replaces the retired gemma-web BlatResultTrackController (blatTrack.html?id=).
PlatformsWebServiceTest
PlatformsWebServiceTicketsCursorTest	Unit tests for the cursor-pagination branch added to PlatformsWebService.getPlatformTickets(PlatformArg, CursorArg, LimitArg) as step 1s of CURSOR_PAGINATION_STEP1_PLAN.md.
PreboardedWebServiceTest	Pure-Mockito unit tests for PreboardedWebService.
RootWebServiceTest
TasksRestTest
TasksWebServiceTest
TasksWebServiceTest.TasksWebServiceContextConfiguration
TaxaWebServiceCursorTest	Unit tests for the cursor-pagination branch added to TaxaWebService.getTaxonDatasets(TaxonArg, FilterArg, OffsetArg, LimitArg, SortArg, CursorArg) as step 1d of CURSOR_PAGINATION_STEP1_PLAN.md, following the same pattern as PlatformsWebServiceCursorTest (step 1c) and GeneWebServiceCursorTest (step 1b).
TaxaWebServiceGeneProbesCursorTest	Unit tests for the cursor-pagination branch added to TaxaWebService.getTaxonGeneProbes(TaxonArg, GeneArg, OffsetArg, LimitArg, CursorArg) as step 1n of CURSOR_PAGINATION_STEP1_PLAN.md.
TaxaWebServiceGenesCursorTest	Unit tests for the cursor-pagination branch added to TaxaWebService.getTaxonGenes(TaxonArg, OffsetArg, LimitArg, CursorArg) as step 1g of CURSOR_PAGINATION_STEP1_PLAN.md.
TaxaWebServiceTest
TicketsWebServiceCursorTest	Unit tests for the cursor-pagination branch added to TicketsWebService#getTickets(boolean, Long, TicketPriority, OffsetArg, LimitArg, CursorArg) as step 1o of CURSOR_PAGINATION_STEP1_PLAN.md.
TicketsWebServiceEventsCursorTest	Unit tests for the cursor-pagination branch added to TicketsWebService.getTicketEvents(Long, CursorArg, LimitArg) as step 1r of CURSOR_PAGINATION_STEP1_PLAN.md.
TicketsWebServiceScratchpadRoutingTest	Real JAX-RS path matching for GET /tickets/scratchpad — the one thing the mocked TicketsWebServiceTest cannot see, since it calls the handler methods directly and a literal route swallowed by @Path("/{id}") would still pass there.
TicketsWebServiceTargetLabelsTest	displayLabel / displayName on ticket targets.
TicketsWebServiceTest	Pure Mockito unit tests for TicketsWebService covering the read-only endpoints introduced in Phase B-2 of AUDIT_AS_WORKFLOW_RECCE.md.
WorkflowWebServiceTest	Pure-Mockito unit tests for WorkflowWebService: REST-shape validation, error mapping (404 / 400 / 409).