Package ubic.gemma.rest

Class AnnotationsWebServiceTest

java.lang.Object

org.glassfish.jersey.test.JerseyTest

ubic.gemma.rest.util.BaseJerseyTest

ubic.gemma.rest.AnnotationsWebServiceTest

All Implemented Interfaces:

org.springframework.beans.factory.Aware, org.springframework.context.ApplicationContextAware

@ContextConfiguration
@TestExecutionListeners(WithSecurityContextTestExecutionListener.class)
public class AnnotationsWebServiceTest
extends BaseJerseyTest

Author:

poirigui

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	AnnotationsWebServiceTest.AnnotationsWebServiceContextConfiguration

Constructor Summary

Constructors

Constructor	Description
AnnotationsWebServiceTest()

Method Summary

Modifier and Type	Method	Description
void	resetMocks()
void	setUpMocks()
void	testChildren()
void	testChildrenPopulatesUsageCount()
void	testGetAnnotationCategories()
void	testGetAnnotationCategoriesEmpty()
void	testGetAnnotationPredicates()
void	testGetAnnotationPredicatesEmpty()
void	testGetAnnotationTerm()
void	testGetAnnotationTermNotFound()
void	testGetAnnotationTermReportsZeroWhenNoExperimentsMatch()
void	testGetAnnotationTermSkipsCountLookupWhenTermHasNoUri()
void	testGetAnnotationTermWhenLookupTimesOut()
void	testGetAnnotationTermWithBlankUriIs400()
void	testGetAnnotationTermWithMissingUriIs400()
void	testParents()
void	testParentsPopulatesUsageCount()
void	testParentsReportsZeroWhenNoExperimentsMatch()
void	testParentsSkipsCountLookupWhenAllTermsLackUris()
void	testParentsWhenInferenceTimeout()
void	testParentsWhenTermIsNotFound()
void	testSearchAnnotationsCollapsesDuplicateEeIdsAcrossClasses()
void	testSearchAnnotationsPopulatesUsageCount()
void	testSearchTaxonDatasets()

Methods inherited from class ubic.gemma.rest.util.BaseJerseyTest

configure, configureClient, getTestContainerFactory, setApplicationContext, setUp, tearDown

Methods inherited from class org.glassfish.jersey.test.JerseyTest

client, close, closeIfNotNull, configureDeployment, disable, enable, forceDisable, forceEnable, forceSet, getAsyncTimeoutMultiplier, getBaseUri, getClient, getLastLoggedRecord, getLoggedRecords, getPort, isEnabled, set, set, setClient, target, target

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

AnnotationsWebServiceTest

public AnnotationsWebServiceTest()

Method Details

setUpMocks

public void setUpMocks()

resetMocks

public void resetMocks()

testSearchTaxonDatasets

@WithMockUser
public void testSearchTaxonDatasets()
                             throws SearchException,
TimeoutException

Throws:

SearchException

TimeoutException

testParents

public void testParents()
                 throws TimeoutException

Throws:

TimeoutException

testParentsWhenTermIsNotFound

public void testParentsWhenTermIsNotFound()
                                   throws TimeoutException

Throws:

TimeoutException

testParentsWhenInferenceTimeout

public void testParentsWhenInferenceTimeout()
                                     throws TimeoutException

Throws:

TimeoutException

testChildren

public void testChildren()
                  throws TimeoutException

Throws:

TimeoutException

testParentsPopulatesUsageCount

public void testParentsPopulatesUsageCount()
                                    throws TimeoutException

Throws:

TimeoutException

testChildrenPopulatesUsageCount

public void testChildrenPopulatesUsageCount()
                                     throws TimeoutException

Throws:

TimeoutException

testParentsReportsZeroWhenNoExperimentsMatch

public void testParentsReportsZeroWhenNoExperimentsMatch()
                                                  throws TimeoutException

Throws:

TimeoutException

testParentsSkipsCountLookupWhenAllTermsLackUris

public void testParentsSkipsCountLookupWhenAllTermsLackUris()
                                                     throws TimeoutException

Throws:

TimeoutException

testSearchAnnotationsPopulatesUsageCount

public void testSearchAnnotationsPopulatesUsageCount()
                                              throws SearchException,
TimeoutException

Throws:

SearchException

TimeoutException

testGetAnnotationCategories

public void testGetAnnotationCategories()

testGetAnnotationCategoriesEmpty

public void testGetAnnotationCategoriesEmpty()

testGetAnnotationPredicates

public void testGetAnnotationPredicates()

testGetAnnotationPredicatesEmpty

public void testGetAnnotationPredicatesEmpty()

testGetAnnotationTerm

public void testGetAnnotationTerm()
                           throws TimeoutException

Throws:

TimeoutException

testGetAnnotationTermReportsZeroWhenNoExperimentsMatch

public void testGetAnnotationTermReportsZeroWhenNoExperimentsMatch()
                                                            throws TimeoutException

Throws:

TimeoutException

testGetAnnotationTermSkipsCountLookupWhenTermHasNoUri

public void testGetAnnotationTermSkipsCountLookupWhenTermHasNoUri()
                                                           throws TimeoutException

Throws:

TimeoutException

testGetAnnotationTermNotFound

public void testGetAnnotationTermNotFound()
                                   throws TimeoutException

Throws:

TimeoutException

testGetAnnotationTermWithBlankUriIs400

public void testGetAnnotationTermWithBlankUriIs400()
                                            throws TimeoutException

Throws:

TimeoutException

testGetAnnotationTermWithMissingUriIs400

public void testGetAnnotationTermWithMissingUriIs400()
                                              throws TimeoutException

Throws:

TimeoutException

testGetAnnotationTermWhenLookupTimesOut

public void testGetAnnotationTermWhenLookupTimesOut()
                                             throws TimeoutException

Throws:

TimeoutException

testSearchAnnotationsCollapsesDuplicateEeIdsAcrossClasses

public void testSearchAnnotationsCollapsesDuplicateEeIdsAcrossClasses()
                                                               throws SearchException,
TimeoutException

Throws:

SearchException

TimeoutException