Class PlatformsWebServicePslTrackTest

java.lang.Object
ubic.gemma.rest.PlatformsWebServicePslTrackTest
@ExtendWith(org.mockito.junit.jupiter.MockitoExtension.class) public class PlatformsWebServicePslTrackTest extends Object
Pure-Mockito test for GET /platforms/{platform}/elements/{probe}/pslTrack, which replaces the retired gemma-web BlatResultTrackController (blatTrack.html?id=).

  • Constructor Details

    • PlatformsWebServicePslTrackTest

      public PlatformsWebServicePslTrackTest()

  • Method Details

    • setUp

      @BeforeEach public void setUp()

    • pslTrackIsServedAsPlainTextNamedAfterTheProbe

      @Test public void pslTrackIsServedAsPlainTextNamedAfterTheProbe()

    • everyAlignmentOfTheProbeLandsInTheOneTrack

      @Test public void everyAlignmentOfTheProbeLandsInTheOneTrack()
      The whole point of keying on the probe rather than on a BLAT result id: every alignment of the probe belongs in one track, so the user sees them together.

    • unplaceableAlignmentsAreDroppedRatherThanFailingTheTrack

      @Test public void unplaceableAlignmentsAreDroppedRatherThanFailingTheTrack()
      An alignment with no target chromosome cannot be placed in the browser. It is dropped rather than allowed to fail the whole track, so a probe with one bad alignment still renders.

    • downloadServesAnAttachmentNamedForTheProbe

      @Test public void downloadServesAnAttachmentNamedForTheProbe()

    • probeWithNoAlignmentsIsA404

      @Test public void probeWithNoAlignmentsIsA404()

    • probeWithOnlyUnplaceableAlignmentsIsA404

      @Test public void probeWithOnlyUnplaceableAlignmentsIsA404()
      Only unplaceable alignments is a 404 too -- there is nothing to show in the browser, and an empty track would read as "aligned nowhere" rather than "cannot be placed".

    • probeWithNoBiologicalCharacteristicIsA404

      @Test public void probeWithNoBiologicalCharacteristicIsA404()