Package ubic.gemma.apps

@NonNullApi package ubic.gemma.apps

Classes

Class	Description
AclLinterCliTest
AclLinterCliTest.AclLinterCliTestContextConfiguration
ArrayDesignMergeCliTest
ArrayDesignMergeCliTest.ArrayDesignMergeCliTestContextConfiguration
ArrayDesignSequenceManipulatingCliTest
BatchProcessingCliTest
BibRefUpdaterCliTest	updatePubMeds: a refresh that fails is reported as an error.
BlacklistCliTest	blackList -pp: which platforms are screened, and what a batch GEO would not answer for reports.
DatabaseCliConfirmationTest	initializeDatabase and updateDatabase must ask for confirmation unless -force is passed.
DifferentialExpressionAnalysisCliTest
ExpressionExperimentManipulatingCLITest
ExpressionExperimentPrimaryPubCliTest
ExternalDatabaseUpdaterCliTest
FindObsoleteTermsCliTest
GeoGrabberCliTest
GeoSingleCellDataDownloaderCliTest
LoadExpressionDataCliTest	addGEOData: which load a given option combination reaches, and what a failed -force reload reports.
LoadSimpleExpressionDataCliTest
NCBIGene2GOAssociationLoaderCLITest
ProcessedDataComputeCLITest
ProtocolAdderCliTest
ProtocolDeleterCliTest
PubMedSearcherIntegrationTest	Tests command line.
RawExpressionDataWriterCliTest	getRawDataMatrix -stdout: every result reaches the standard output, and a write that fails is an error.
RNASeqDataAddCliTest
TestCli
UnifiedOntologyUpdaterCliTest	updateUnifiedOntology -skipDownload builds only from a complete set of source files.
UpdateGeoSourceMetadataCliTest	The backfill writes the GEO document and nothing else, and it skips what is already done.
VerifyPublicationEvidenceCliTest	The two rules that must not regress: the command refuses to run without being told which half to run, and a curator's assertion is never written over.