Class RNASeqDataAddCliTest

java.lang.Object

ubic.gemma.core.util.test.BaseTest5

ubic.gemma.cli.util.test.BaseCliTest5

ubic.gemma.apps.RNASeqDataAddCliTest

@ContextConfiguration
@TestExecutionListeners(value=org.springframework.security.test.context.support.WithSecurityContextTestExecutionListener.class,
                        mergeMode=MERGE_WITH_DEFAULTS)
public class RNASeqDataAddCliTest
extends BaseCliTest5

Constructor Summary

Constructors

Constructor	Description
RNASeqDataAddCliTest()

Method Summary

Modifier and Type	Method	Description
void	setUp()
void	tearDown()
void	testBackfillLog2cpmStopsWhenThePreferredDataIsNotCounts()	-log2cpm computes log2cpm from the preferred data on the assumption that it is counts, and makes the result the preferred data.
void	testPaired()
void	testUnpaired()
void	testWhenPairednessIsUnknown()

Methods inherited from class Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details

RNASeqDataAddCliTest

public RNASeqDataAddCliTest()

Method Details

setUp

@BeforeEach
public void setUp()
           throws IOException

Throws:

IOException

tearDown

@AfterEach
public void tearDown()

testPaired

@Test
@WithMockUser
public void testPaired()

testUnpaired

@Test
@WithMockUser
public void testUnpaired()

testWhenPairednessIsUnknown

@Test
@WithMockUser
public void testWhenPairednessIsUnknown()

testBackfillLog2cpmStopsWhenThePreferredDataIsNotCounts

@Test
@WithMockUser
public void testBackfillLog2cpmStopsWhenThePreferredDataIsNotCounts()

-log2cpm computes log2cpm from the preferred data on the assumption that it is counts, and makes the result the preferred data. When the preferred data is not counts, nothing must be transformed.