List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Maejima, Takashi et al. (2014) Direct evidence for pitavastatin induced chromatin structure change in the KLF4 gene in endothelial cells.; PLoS One, 9: e96005 |
|
GSE32693 |
| Maekawa, Momoko et al. (2007) Requirement for ERK MAP kinase in mouse preimplantation development.; Development, 134: 2751-9 |
|
GSE7309 |
| Maertens, Rebecca M et al. (2013) A global toxicogenomic analysis investigating the mechanistic differences between tobacco and marijuana smoke condensates in vitro.; Toxicology, 308: 60-73 |
|
GSE44603 |
| Maertzdorf, Jeroen et al. (2011) Functional correlations of pathogenesis-driven gene expression signatures in tuberculosis.; PLoS One, 6: e26938 |
|
GSE28623 |
| Maes, Olivier C et al. (2009) Methodology for discovery of Alzheimer's disease blood-based biomarkers.; J Gerontol A Biol Sci Med Sci, 64: 636-45 |
|
GSE4229 |
| Maes, Olivier C et al. (2010) A GSTM3 polymorphism associated with an etiopathogenetic mechanism in Alzheimer disease.; Neurobiol Aging, 31: 34-45 |
|
GSE4227 |
| Maffei, R et al. (2007) Angiopoietin-2 expression in B-cell chronic lymphocytic leukemia: association with clinical outcome and immunoglobulin heavy-chain mutational status.; Leukemia, 21: 1312-5 |
|
GSE4207 |
| Maffei, Rossana et al. (2012) Physical contact with endothelial cells through ?1- and ?2- integrins rescues chronic lymphocytic leukemia cells from spontaneous and drug-induced apoptosis and induces a peculiar gene expression profile in leukemic cells.; Haematologica, [no vol.]: [no pages] |
|
GSE28787 |
| Maffei, Rossana et al. (2018) Increased SHISA3 expression characterizes chronic lymphocytic leukemia patients sensitive to lenalidomide.; Leuk Lymphoma, 59: 423-433 |
|
GSE87910 |
| Maganti, Harinad B et al. (2018) Targeting the MTF2-MDM2 Axis Sensitizes Refractory Acute Myeloid Leukemia to Chemotherapy.; Cancer Discov, 8: 1376-1389 |
|
GSE98343 |
| Mages, Jörg et al. (2007) A genome-wide analysis of LPS tolerance in macrophages.; Immunobiology, 212: 723-37 |
|
GSE8621 |
| Maghin, Edoardo et al. (2022) Customized bioreactor enables the production of 3D diaphragmatic constructs influencing matrix remodeling and fibroblast overgrowth.; NPJ Regen Med, 7: 25 |
|
GSE180636 |
| Magini, Pamela et al. (2019) Loss of SMPD4 Causes a Developmental Disorder Characterized by Microcephaly and Congenital Arthrogryposis.; Am J Hum Genet, 105: 689-705 |
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GSE133264 |
| Magistri, Marco et al. (2015) Transcriptomics Profiling of Alzheimer's Disease Reveal Neurovascular Defects, Altered Amyloid-? Homeostasis, and Deregulated Expression of Long Noncoding RNAs.; J Alzheimers Dis, 48: 647-65 |
|
GSE67333 |
| Magistri, Marco et al. (2016) A comparative transcriptomic analysis of astrocytes differentiation from human neural progenitor cells.; Eur J Neurosci, 44: 2858-2870 |
|
GSE76122 |
| Magli, Alessandro et al. (2017) PAX7 Targets, CD54, Integrin α9β1, and SDC2, Allow Isolation of Human ESC/iPSC-Derived Myogenic Progenitors.; Cell Rep, 19: 2867-2877 |
|
GSE98976 |
| Magliozzi, Roberta et al. (2019) Meningeal inflammation changes the balance of TNF signalling in cortical grey matter in multiple sclerosis.; J Neuroinflammation, 16: 259 |
|
GSE135511 |
| Magliulo, Daniela et al. (2023) The transcription factor HIF2α partakes in the differentiation block of acute myeloid leukemia.; EMBO Mol Med, 15: e17810 |
|
GSE175757 |
| Magnani, Luca et al. (2011) PBX1 genomic pioneer function drives ERα signaling underlying progression in breast cancer.; PLoS Genet, 7: e1002368 |
|
GSE28006 |
| Magnani, Luca et al. (2013) Genome-wide reprogramming of the chromatin landscape underlies endocrine therapy resistance in breast cancer.; Proc Natl Acad Sci U S A, 110: E1490-9 |
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GSE39417 GSE36928 |
| Magni, Martina et al. (2019) Tyrosine kinase inhibition to improve anthracycline-based chemotherapy efficacy in T-cell lymphoma.; Br J Cancer, 121: 567-577 |
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GSE129289 |
| Magnusson, Anna et al. (2024) Porphyromonas gingivalistriggers microglia activation and neurodegenerative processes through NOX4.; Front Cell Infect Microbiol, 14: 1451683 |
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GSE274532 |
| Magnusson, Rasmus et al. (2017) LASSIM-A network inference toolbox for genome-wide mechanistic modeling.; PLoS Comput Biol, 13: e1005608 |
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GSE65880 |
| Magrangeas, F et al. (2013) Minor clone provides a reservoir for relapse in multiple myeloma.; Leukemia, 27: 473-81 |
|
GSE37414 |
| Mahani, Amir et al. (2021) Differential Transcriptional Reprogramming by Wild Type and Lymphoma-Associated Mutant MYC Proteins as B-Cells Convert to a Lymphoma Phenotype.; Cancers (Basel), 13: [no pages] |
|
GSE122602 |
| Mahdi, Haider et al. (2021) Genomic analyses of high-grade neuroendocrine gynecological malignancies reveal a unique mutational landscape and therapeutic vulnerabilities.; Mol Oncol, [no vol.]: [no pages] |
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GSE157601 |
| Mahdi, Taman et al. (2012) Secreted frizzled-related protein 4 reduces insulin secretion and is overexpressed in type 2 diabetes.; Cell Metab, 16: 625-33 |
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GSE41762 |
| Mahendran, Yuvaraj et al. (2013) Association of ketone body levels with hyperglycemia and type 2 diabetes in 9,398 Finnish men.; Diabetes, 62: 3618-26 |
|
GSE32512 |
| Maher-Laporte, Marjolaine et al. (2010) Genome wide identification of Staufen2-bound mRNAs in embryonic rat brains.; BMB Rep, 43: 344-8 |
|
GSE16437 |
| Maherali, Nimet et al. (2008) A high-efficiency system for the generation and study of human induced pluripotent stem cells.; Cell Stem Cell, 3: 340-5 |
|
GSE12390 |
| Mahller, Y Y et al. (2008) Molecular analysis of human cancer cells infected by an oncolytic HSV-1 reveals multiple upregulated cellular genes and a role for SOCS1 in virus replication.; Cancer Gene Ther, 15: 733-41 |
|
GSE8717 |
| Mahmassani, Ziad S et al. (2021) Short-term metformin ingestion by healthy older adults improves myoblast function.; Am J Physiol Cell Physiol, 320: C566-C576 |
|
GSE153953 |
| Mahony, Shaun et al. (2011) Ligand-dependent dynamics of retinoic acid receptor binding during early neurogenesis.; Genome Biol, 12: R2 |
|
GSE19372 |
| Mahowald, Michael A et al. (2009) Characterizing a model human gut microbiota composed of members of its two dominant bacterial phyla.; Proc Natl Acad Sci U S A, 106: 5859-64 |
|
GSE14686 |
| Mahul-Mellier, Anne-Laure et al. (2020) The process of Lewy body formation, rather than simply ?-synuclein fibrillization, is one of the major drivers of neurodegeneration.; Proc Natl Acad Sci U S A, 117: 4971-4982 |
|
GSE142416 |
| Maier, Carina R et al. (2023) USP28 controls SREBP2 and the mevalonate pathway to drive tumour growth in squamous cancer.; Cell Death Differ, 30: 1710-1725 |
|
GSE204703 |
| Maier, Kristopher G et al. (2010) Thrombospondin-1: a proatherosclerotic protein augmented by hyperglycemia.; J Vasc Surg, 51: 1238-47 |
|
GSE17556 |
| Maimaiti, Munire et al. (2024) Blocking cGAS-STING pathway promotes post-stroke functional recovery in an extended treatment window via facilitating remyelination.; Med, 5: 622-644.e8 |
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GSE236006 GSE236108 GSE226410 |
| Maimaitili, Muyesier et al. (2023) Enhanced production of mesencephalic dopaminergic neurons from lineage-restricted human undifferentiated stem cells.; Nat Commun, 14: 7871 |
|
GSE246680 |
| Main, Heather et al. (2010) Interactions between Notch- and hypoxia-induced transcriptomes in embryonic stem cells.; Exp Cell Res, 316: 1610-24 |
|
GSE19074 |
| Maino, Barbara et al. (2018) The trophic effect of nerve growth factor in primary cultures of rat hippocampal neurons is associated to an anti-inflammatory and immunosuppressive transcriptional program.; J Cell Physiol, 233: 7178-7187 |
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GSE111514 |
| Majak, K et al. (2009) Epileptogenesis alters gene expression pattern in rats subjected to amygdala-dependent emotional learning.; Neuroscience, 159: 468-82 |
|
GSE13624 |
| Majchrzak-Celińska, Aleksandra et al. (2022) Lichen Secondary Metabolites Inhibit the Wnt/β-Catenin Pathway in Glioblastoma Cells and Improve the Anticancer Effects of Temozolomide.; Cells, 11: [no pages] |
|
GSE199185 |
| Majd, Homa et al. (2025) Engrafted nitrergic neurons derived from hPSCs improve gut dysmotility in mice.; Nature, [no vol.]: [no pages] |
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GSE298676 |
| Majdan, Marta et al. (2006) Effects of visual experience on activity-dependent gene regulation in cortex.; Nat Neurosci, 9: 650-9 |
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GSE4267 GSE4263 GSE4266 GSE4264 GSE4265 |
| Majer, Anna et al. (2012) Early mechanisms of pathobiology are revealed by transcriptional temporal dynamics in hippocampal CA1 neurons of prion infected mice.; PLoS Pathog, 8: e1003002 |
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GSE34530 |
| Majerníková, Naďa et al. (2024) The link between amyloid β and ferroptosis pathway in Alzheimer's disease progression.; Cell Death Dis, 15: 782 |
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GSE266358 |
| Majidi, Shahriyar P et al. (2019) Chromatin Environment and Cellular Context Specify Compensatory Activity of Paralogous MEF2 Transcription Factors.; Cell Rep, 29: 2001-2015.e5 |
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GSE138028 |
| Majumdar, Ramanath et al. (2007) Elevated expressions of osteopontin and tenascin C in ascending aortic aneurysms are associated with trileaflet aortic valves as compared with bicuspid aortic valves.; Cardiovasc Pathol, 16: 144-50 |
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GSE5180 |
| Majumder, Pradip K et al. (2004) mTOR inhibition reverses Akt-dependent prostate intraepithelial neoplasia through regulation of apoptotic and HIF-1-dependent pathways.; Nat Med, 10: 594-601 |
|
GSE1413 |
| Mak, Ka Sin et al. (2014) Repression of chimeric transcripts emanating from endogenous retrotransposons by a sequence-specific transcription factor.; Genome Biol, 15: R58 |
|
GSE50083 |
| Makeyev, Eugene V et al. (2007) The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing.; Mol Cell, 27: 435-48 |
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GSE8498 |
| Makhlouf, Melanie et al. (2024) Short-term consumption of highly processed diets varying in macronutrient content impair the sense of smell and brain metabolism in mice.; Mol Metab, 79: 101837 |
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GSE217835 GSE217836 |
| Makhlouf, Mélanie et al. (2025) A common mechanism of singular gene choice is revealed by broadly expressed odorant receptor transgenes within the olfactory epithelium.; Cell Rep, 44: 115955 |
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GSE207626 |
| Makhnovskii, Pavel A et al. (2022) Alternative transcription start sites contribute to acute-stress-induced transcriptome response in human skeletal muscle.; Hum Genomics, 16: 24 |
|
GSE164081 |
| Makhnovskii, Pavel A et al. (2023) Dysregulation of early gene response to a mixed meal in skeletal muscle in obesity and type 2 diabetes.; Physiol Genomics, 55: 468-477 |
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GSE231509 |
| Makinde, Hadijat M et al. (2020) Microglia Adopt Longitudinal Transcriptional Changes After Traumatic Brain Injury.; J Surg Res, 246: 113-122 |
|
GSE249918 |
| Makino, Yuki et al. (2022) Comprehensive genomics in androgen receptor-dependent castration-resistant prostate cancer identifies an adaptation pathway mediated by opioid receptor kappa 1.; Commun Biol, 5: 299 |
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GSE194248 |
| Makki, Nadja et al. (2011) Identification of novel Hoxa1 downstream targets regulating hindbrain, neural crest and inner ear development.; Dev Biol, 357: 295-304 |
|
GSE25868 |
| Makusheva, Yulia et al. (2022) The C-type lectin receptor Clec1A plays an important role in the development of experimental autoimmune encephalomyelitis by enhancing antigen presenting ability of dendritic cells and inducing inflammatory cytokine IL-17.; Exp Anim, [no vol.]: [no pages] |
|
GSE190289 |
| Malachowski, Thomas et al. (2023) Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome.; Cell, 186: 5840-5858.e36 |
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GSE218676 |
| Malatesta, Silvia et al. (2026) α-ketoglutarate/succinate ratio imbalance impairs thymine DNA glycosylase function and base excision repair process increasing susceptibility to pancreatic cancer.; Cell Death Dis, 17: [no pages] |
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GSE302730 |
| Malcher, Agnieszka et al. (2013) Potential biomarkers of nonobstructive azoospermia identified in microarray gene expression analysis.; Fertil Steril, [no vol.]: [no pages] |
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GSE45885 |
| Malcher, Agnieszka et al. (2013) The Gene Expression Analysis of Paracrine/Autocrine Factors in Patients with Spermatogenetic Failure Compared with Normal Spermatogenesis.; Am J Reprod Immunol, [no vol.]: [no pages] |
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GSE45887 |
| Malekizadeh, Yasaman et al. (2020) Whole transcriptome in silico screening implicates cardiovascular and infectious disease in the mechanism of action underlying atypical antipsychotic side effects.; Alzheimers Dement (N Y), 6: e12078 |
|
GSE149611 |
| Maleszewska, Monika et al. (2016) The decrease in histone methyltransferase EZH2 in response to fluid shear stress alters endothelial gene expression and promotes quiescence.; Angiogenesis, 19: 9-24 |
|
GSE71164 |
| Malhotra, Rajneesh et al. (2017) Altered regulation and expression of genes by BET family of proteins in COPD patients.; PLoS One, 12: e0173115 |
|
GSE92532 |
| Malhotra, Sunny et al. (2011) Search for specific biomarkers of IFN? bioactivity in patients with multiple sclerosis.; PLoS One, 6: e23634 |
|
GSE26104 |
| Mali, Sonali S et al. (2024) SARS-CoV-2 papain-like protease activates nociceptors to drive sneeze and pain.; bioRxiv, [no vol.]: [no pages] |
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GSE252056.2 GSE252056.1 |
| Malik, Assaf et al. (2012) Transcriptome analysis of the spalax hypoxia survival response includes suppression of apoptosis and tight control of angiogenesis.; BMC Genomics, 13: 615 |
|
GSE37619.1 |
| Malik, Athar N et al. (2014) Genome-wide identification and characterization of functional neuronal activity-dependent enhancers.; Nat Neurosci, 17: 1330-9 |
|
GSE60049 |
| Malik, Mohd Yaseen et al. (2024) Impaired striatal glutathione-ascorbate metabolism induces transient dopamine increase and motor dysfunction.; Nat Metab, 6: 2100-2117 |
|
GSE221922 |
| Malik, Nasir et al. (2014) Comparison of the gene expression profiles of human fetal cortical astrocytes with pluripotent stem cell derived neural stem cells identifies human astrocyte markers and signaling pathways and transcription factors active in human astrocytes.; PLoS One, 9: e96139 |
|
GSE53404 |
| Malik, Navdeep et al. (2019) The transcription factor CBFB suppresses breast cancer through orchestrating translation and transcription.; Nat Commun, 10: 2071 |
|
GSE120216 |
| Malik, Navdeep et al. (2021) CBFB cooperates with p53 to maintain TAp73 expression and suppress breast cancer.; PLoS Genet, 17: e1009553 |
|
GSE146278 |
| Malik, Nazma et al. (2023) Induction of lysosomal and mitochondrial biogenesis by AMPK phosphorylation of FNIP1.; Science, 380: eabj5559 |
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GSE218827.2 GSE218827.1 GSE218827.5 GSE218827.4 GSE218827.3 |
| Malik, Shipra et al. (2024) Antitumor efficacy of a sequence-specific DNA-targeted γPNA-based c-Myc inhibitor.; Cell Rep Med, 5: 101354 |
|
GSE246439 |
| Malik, Victoria A et al. (2020) GDF15 promotes simultaneous astrocyte remodeling and tight junction strengthening at the blood-brain barrier.; J Neurosci Res, 98: 1433-1456 |
|
GSE89873 |
| Malik, Vikas et al. (2019) Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2.; Nat Commun, 10: 3477 |
|
GSE103979 |
| Malik, Vikas et al. (2025) Multiomics reveal biomolecular shifts and ER stress in sleep-restricted women affecting NSC functions.; iScience, 28: 112510 |
|
GSE254828 |
| Maliszewska, Agnieszka et al. (2013) Differential gene expression of medullary thyroid carcinoma reveals specific markers associated with genetic conditions.; Am J Pathol, 182: 350-62 |
|
GSE32662 |
| Mall, Moritz et al. (2017) Myt1l safeguards neuronal identity by actively repressing many non-neuronal fates.; Nature, 544: 245-249 |
|
GSE72121 |
| Mallery, Susan R et al. (2008) Topical application of a bioadhesive black raspberry gel modulates gene expression and reduces cyclooxygenase 2 protein in human premalignant oral lesions.; Cancer Res, 68: 4945-57 |
|
GSE10174 |
| Mallika, Chatterjee et al. (2015) Gbx2 is essential for maintaining thalamic neuron identity and repressing habenular characters in the developing thalamus.; Dev Biol, 407: 26-39 |
|
GSE71690.1 |
| Mallon, Barbara S et al. (2013) StemCellDB: the human pluripotent stem cell database at the National Institutes of Health.; Stem Cell Res, 10: 57-66 |
|
GSE32923 |
| Malmevik, Josephine et al. (2015) Identification of the miRNA targetome in hippocampal neurons using RIP-seq.; Sci Rep, 5: 12609 |
|
GSE65543 |
| Malmevik, Josephine et al. (2016) Distinct cognitive effects and underlying transcriptome changes upon inhibition of individual miRNAs in hippocampal neurons.; Sci Rep, 6: 19879 |
|
GSE68884 |