List of all 16,912 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Pfurr, Sabrina et al. (2017) The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development.; Development, 144: 3917-3931 |
|
GSE104065 |
| Pham, Alexander M et al. (2023) Merkel Cell Polyomavirus Large T Antigen Induces Cellular Senescence for Host Growth Arrest and Viral Genome Persistence through Its Unique Domain.; Cells, 12: [no pages] |
|
GSE189291 |
| Pham, Duy et al. (2023) Batf stabilizes Th17 cell development via impaired Stat5 recruitment of Ets1-Runx1 complexes.; EMBO J, 42: e109803 |
|
GSE167418 |
| Pham, Thang L et al. (2020) Novel RvD6 stereoisomer induces corneal nerve regeneration and wound healing post-injury by modulating trigeminal transcriptomic signature.; Sci Rep, 10: 4582 |
|
GSE138685 |
| Pham, X et al. (2016) The DPYSL2 gene connects mTOR and schizophrenia.; Transl Psychiatry, 6: e933 |
|
GSE82237 |
| Phan, Khanh P et al. (2023) COMMD10 Is Essential for Neural Plate Development during Embryogenesis.; J Dev Biol, 11: [no pages] |
|
GSE216492 |
| Phan, Vinhthuy et al. (2009) Analyzing microarray data with transitive directed acyclic graphs.; J Bioinform Comput Biol, 7: 135-56 |
|
GSE8880 |
| Phani, Sudarshan et al. (2010) VTA neurons show a potentially protective transcriptional response to MPTP.; Brain Res, 1343: 1-13 |
|
GSE17542 |
| Phatnani, Hemali P et al. (2013) Intricate interplay between astrocytes and motor neurons in ALS.; Proc Natl Acad Sci U S A, 110: E756-65 |
|
GSE43879 |
| Phelan, David E et al. (2024) Orphan Nuclear Receptor Family 4A (NR4A) Members NR4A2 and NR4A3 Selectively Modulate Elements of the Monocyte Response to Buffered Hypercapnia.; Int J Mol Sci, 25: [no pages] |
|
GSE251925 GSE178391 |
| Phelan, James D et al. (2024) Response to Bruton's tyrosine kinase inhibitors in aggressive lymphomas linked to chronic selective autophagy.; Cancer Cell, 42: 238-252.e9 |
|
GSE227465 |
| Phelan, Michael Alexander et al. (2020) Soy protein nanofiber scaffolds for uniform maturation of hiPSC-derived retinal pigment epithelium.; Tissue Eng Part C Methods, [no vol.]: [no pages] |
|
GSE153645 |
| Philibert, Robert A et al. (2012) Coordinated DNA methylation and gene expression changes in smoker alveolar macrophages: specific effects on VEGF receptor 1 expression.; J Leukoc Biol, 92: 621-31 |
|
GSE27002 |
| Philippar, Ulrike et al. (2004) The SRF target gene Fhl2 antagonizes RhoA/MAL-dependent activation of SRF.; Mol Cell, 16: 867-80 |
|
GSE1948 GSE1949 |
| Philippidou, Polyxeni et al. (2012) Sustained Hox5 gene activity is required for respiratory motor neuron development.; Nat Neurosci, 15: 1636-44 |
|
GSE41013 |
| Phillips, Angela M et al. (2018) Enhanced ER proteostasis and temperature differentially impact the mutational tolerance of influenza hemagglutinin.; Elife, 7: [no pages] |
|
GSE115168 |
| Phillips, Bethan E et al. (2013) Molecular networks of human muscle adaptation to exercise and age.; PLoS Genet, 9: e1003389 |
|
GSE47874 GSE47881 |
| Phillips, Emma et al. (2024) Malformin C preferentially kills glioblastoma stem-like cells via concerted induction of proteotoxic stress and autophagic flux blockade.; Mol Oncol, [no vol.]: [no pages] |
|
GSE231595 |
| Phillips, Robert A et al. (2023) Temporally specific gene expression and chromatin remodeling programs regulate a conservedPdynenhancer.; bioRxiv, [no vol.]: [no pages] |
|
GSE233752 |
| Phillips, Sarah et al. (2014) Cell-state transitions regulated by SLUG are critical for tissue regeneration and tumor initiation.; Stem Cell Reports, 2: 633-47 |
|
GSE55620 |
| Phillips, Tom J et al. (2017) Treating the placenta to prevent adverse effects of gestational hypoxia on fetal brain development.; Sci Rep, 7: 9079 |
|
GSE86408 |
| Phoenix, Timothy N et al. (2016) Medulloblastoma Genotype Dictates Blood Brain Barrier Phenotype.; Cancer Cell, 29: 508-22 |
|
GSE73753 |
| Phuphanitcharoenkun, Suphanun et al. (2024) Characterization of macrophages associated with human skin models exposed to UV radiation.; Commun Biol, 7: 1284 |
|
GSE261112 |
| Pi, Wen-Chieh et al. (2020) E2A-PBX1 functions as a coactivator for RUNX1 in acute lymphoblastic leukemia.; Blood, 136: 11-23 |
|
GSE138031 |
| Piao, Jinghua et al. (2015) Human embryonic stem cell-derived oligodendrocyte progenitors remyelinate the brain and rescue behavioral deficits following radiation.; Cell Stem Cell, 16: 198-210 |
|
GSE63318 |
| Piao, Lian Shu et al. (2012) CD133+ liver cancer stem cells modulate radioresistance in human hepatocellular carcinoma.; Cancer Lett, 315: 129-37 |
|
GSE22247 |
| Piao, Yuji et al. (2013) Acquired resistance to anti-VEGF therapy in glioblastoma is associated with a mesenchymal transition.; Clin Cancer Res, 19: 4392-403 |
|
GSE45161 |
| Piazza, Rocco et al. (2013) Recurrent SETBP1 mutations in atypical chronic myeloid leukemia.; Nat Genet, 45: 18-24 |
|
GSE42146 |
| Picard, Alexandre et al. (2016) A Genetic Screen Identifies Hypothalamic Fgf15 as a Regulator of Glucagon Secretion.; Cell Rep, 17: 1795-1806 |
|
GSE87586 |
| Picard, Nicolas et al. (2013) Protein Phosphatase 1 Inhibitor-1 Deficiency Reduces Phosphorylation of Renal NaCl Cotransporter and Causes Arterial Hypotension.; J Am Soc Nephrol, [no vol.]: [no pages] |
|
GSE51935 |
| Picaud, Sarah et al. (2016) Promiscuous targeting of bromodomains by bromosporine identifies BET proteins as master regulators of primary transcription response in leukemia.; Sci Adv, 2: e1600760 |
|
GSE78827 GSE78829 |
| Piccaluga, Pier Paolo et al. (2007) Gene expression analysis of peripheral T cell lymphoma, unspecified, reveals distinct profiles and new potential therapeutic targets.; J Clin Invest, 117: 823-34 |
|
GSE6338 |
| Picelli, Simone et al. (2013) Smart-seq2 for sensitive full-length transcriptome profiling in single cells.; Nat Methods, 10: 1096-8 |
|
GSE49321.2 GSE49321.1 |
| Pichol-Thievend, Cathy et al. (2024) VC-resist glioblastoma cell state: vessel co-option as a key driver of chemoradiation resistance.; Nat Commun, 15: 3602 |
|
GSE218860.2.2 GSE218860.2.1 GSE218860.1 |
| Pickering, R Taylor et al. (2016) Depot Dependent Effects of Dexamethasone on Gene Expression in Human Omental and Abdominal Subcutaneous Adipose Tissues from Obese Women.; PLoS One, 11: e0167337 |
|
GSE88966 |
| Pickert, Geethanjali et al. (2009) STAT3 links IL-22 signaling in intestinal epithelial cells to mucosal wound healing.; J Exp Med, 206: 1465-72 |
|
GSE15955 |
| Pickett, Gavin et al. (2010) Effects of 10 cigarette smoke condensates on primary human airway epithelial cells by comparative gene and cytokine expression studies.; Toxicol Sci, 114: 79-89 |
|
GSE18235 |
| Picone, Joseph A et al. (2024) The function of the ZFP189 transcription factor in the nucleus accumbens facilitates cocaine-specific transcriptional and behavioral adaptations.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE276453 |
| Piechota, M et al. (2012) Common transcriptional effects in the mouse striatum following chronic treatment with heroin and methamphetamine.; Genes Brain Behav, 11: 404-14 |
|
GSE30305 |
| Piechota, Marcin et al. (2010) The dissection of transcriptional modules regulated by various drugs of abuse in the mouse striatum.; Genome Biol, 11: R48 |
|
GSE15774 |
| Piechota, Marcin et al. (2017) Transcriptional signatures of steroid hormones in the striatal neurons and astrocytes.; BMC Neurosci, 18: 37 |
|
GSE78281 |
| Piechota, Marcin et al. (2022) Glucocorticoid-Regulated Kinase CAMKIγ in the Central Amygdala Controls Anxiety-like Behavior in Mice.; Int J Mol Sci, 23: [no pages] |
|
GSE74002 |
| Pieraccioli, Marco et al. (2018) ZNF281 inhibits neuronal differentiation and is a prognostic marker for neuroblastoma.; Proc Natl Acad Sci U S A, 115: 7356-7361 |
|
GSE112029 |
| Pierce, Steven E et al. (2018) Parkinson's disease genetic risk in a midbrain neuronal cell line.; Neurobiol Dis, 114: 53-64 |
|
GSE109706 |
| Pieri, Valentina et al. (2023) Aberrant L-Fucose Accumulation and Increased Core Fucosylation Are Metabolic Liabilities in Mesenchymal Glioblastoma.; Cancer Res, 83: 195-218 |
|
GSE202200 |
| Pierrelée, Michaël et al. (2021) Introducing the novel Cytoscape app TimeNexus to analyze time-series data using temporal MultiLayer Networks (tMLNs).; Sci Rep, 11: 13691 |
|
GSE161764 |
| Piersanti, Stefania et al. (2013) Differentiated neuroprogenitor cells incubated with human or canine adenovirus, or lentiviral vectors have distinct transcriptome profiles.; PLoS One, 8: e69808 |
|
GSE47130 |
| Piersanti, Stefania et al. (2015) Transcriptional Response of Human Neurospheres to Helper-Dependent CAV-2 Vectors Involves the Modulation of DNA Damage Response, Microtubule and Centromere Gene Groups.; PLoS One, 10: e0133607 |
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GSE62687 |
| Pietersen, Charmaine Y et al. (2014) Molecular profiles of parvalbumin-immunoreactive neurons in the superior temporal cortex in schizophrenia.; J Neurogenet, 28: 70-85 |
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GSE46509 |
| Pietersen, Charmaine Y et al. (2014) Molecular profiles of pyramidal neurons in the superior temporal cortex in schizophrenia.; J Neurogenet, 28: 53-69 |
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GSE37981 |
| Pietras, Eric M et al. (2015) Functionally Distinct Subsets of Lineage-Biased Multipotent Progenitors Control Blood Production in Normal and Regenerative Conditions.; Cell Stem Cell, 17: 35-46 |
|
GSE68529 |
| Pietrogrande, Giovanni et al. (2025) Valproic acid-induced teratogenicity is driven by senescence and prevented by Rapamycin in human spinal cord and animal models.; Mol Psychiatry, 30: 986-998 |
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GSE241903 |
| Pietrzyk, Jacek J et al. (2013) Gene expression profiling in preterm infants: new aspects of bronchopulmonary dysplasia development.; PLoS One, 8: e78585 |
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GSE32472 |
| Pigazzi, M et al. (2011) MLL partner genes drive distinct gene expression profiles and genomic alterations in pediatric acute myeloid leukemia: an AIEOP study.; Leukemia, 25: 560-3 |
|
GSE19577 |
| Pignochino, Ymera et al. (2017) PARP1 expression drives the synergistic antitumor activity of trabectedin and PARP1 inhibitors in sarcoma preclinical models.; Mol Cancer, 16: 86 |
|
GSE76981 |
| Pihlajamaa, Päivi et al. (2011) The phytoestrogen genistein is a tissue-specific androgen receptor modulator.; Endocrinology, 152: 4395-405 |
|
GSE31341 |
| Pihlajamäki, Jussi et al. (2009) Thyroid hormone-related regulation of gene expression in human fatty liver.; J Clin Endocrinol Metab, 94: 3521-9 |
|
GSE15653 |
| Pihlajoki, Marjut et al. (2013) Conditional mutagenesis of Gata6 in SF1-positive cells causes gonadal-like differentiation in the adrenal cortex of mice.; Endocrinology, 154: 1754-67 |
|
GSE40398 |
| Pike, Jack W et al. (2014) Identification of gene expression changes in postnatal rat foreskin after in utero anti-androgen exposure.; Reprod Toxicol, 47: 42-50 |
|
GSE48802 |
| Pike, Kelly A et al. (2014) Protein tyrosine phosphatase 1B is a regulator of the interleukin-10-induced transcriptional program in macrophages.; Sci Signal, 7: ra43 |
|
GSE49449 |
| Pilanc, Paulina et al. (2021) A Novel Oral Arginase 1/2 Inhibitor Enhances the Antitumor Effect of PD-1 Inhibition in Murine Experimental Gliomas by Altering the Immunosuppressive Environment.; Front Oncol, 11: 703465 |
|
GSE173865 |
| Pilbrow, Anna P et al. (2012) The chromosome 9p21.3 coronary heart disease risk allele is associated with altered gene expression in normal heart and vascular tissues.; PLoS One, 7: e39574 |
|
GSE22253 |
| Pillat, Micheli Mainardi et al. (2023) Differentiated Embryonic Neurospheres from Familial Alzheimer's Disease Model Show Innate Immune and Glial Cell Responses.; Stem Cell Rev Rep, 19: 1800-1811 |
|
GSE227002 |
| Piltonen, T T et al. (2013) Mesenchymal stem/progenitors and other endometrial cell types from women with polycystic ovary syndrome (PCOS) display inflammatory and oncogenic potential.; J Clin Endocrinol Metab, 98: 3765-75 |
|
GSE48301 |
| Pimenova, Anna A et al. (2021) Alzheimer's-associated PU.1 expression levels regulate microglial inflammatory response.; Neurobiol Dis, 148: 105217 |
|
GSE162526 |
| Pimentel, Harold et al. (2014) A dynamic alternative splicing program regulates gene expression during terminal erythropoiesis.; Nucleic Acids Res, 42: 4031-42 |
|
GSE53635 |
| Pimentel-Santos, Fernando M et al. (2011) Whole blood transcriptional profiling in ankylosing spondylitis identifies novel candidate genes that might contribute to the inflammatory and tissue-destructive disease aspects.; Arthritis Res Ther, 13: R57 |
|
GSE25101 |
| Pimkin, Maxim et al. (2014) Divergent functions of hematopoietic transcription factors in lineage priming and differentiation during erythro-megakaryopoiesis.; Genome Res, 24: 1932-44 |
|
GSE49664 |
| Pina, Cristina et al. (2012) Inferring rules of lineage commitment in haematopoiesis.; Nat Cell Biol, 14: 287-94 |
|
GSE34605 |
| Pincini, Alessandra et al. (2013) Identification of p130Cas/ErbB2-dependent invasive signatures in transformed mammary epithelial cells.; Cell Cycle, 12: [no pages] |
|
GSE43907 |
| Pingul, Bianca Y et al. (2022) Dissection of the MEF2D-IRF8 transcriptional circuit dependency in acute myeloid leukemia.; iScience, 25: 105139 |
|
GSE186131 |
| Pinheiro da Silva, Fabiano et al. (2023) Transcriptome analysis of six tissues obtained post-mortem from sepsis patients.; J Cell Mol Med, 27: 3157-3167 |
|
GSE237861 |
| Pinho, Raquel et al. (2016) Gene Expression Differences in Peripheral Blood of Parkinson's Disease Patients with Distinct Progression Profiles.; PLoS One, 11: e0157852 |
|
GSE80599 |
| Pinson, Marisa R et al. (2021) Divergent and overlapping hippocampal and cerebellar transcriptome responses following developmental ethanol exposure during the secondary neurogenic period.; Alcohol Clin Exp Res, 45: 1408-1423 |
|
GSE166196 |
| Pinson, Marisa R et al. (2022) Prenatal alcohol exposure contributes to negative pregnancy outcomes by altering fetal vascular dynamics and the placental transcriptome.; Alcohol Clin Exp Res, 46: 1036-1049 |
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GSE195489 |
| Pinson, Marisa R et al. (2023) Prenatal alcohol alters inflammatory signatures in enteric portal tissues following adult-onset cerebrovascular ischemic stroke.; iScience, 26: 107920 |
|
GSE217173 |
| Pintacuda, Greta et al. (2023) Protein interaction studies in human induced neurons indicate convergent biology underlying autism spectrum disorders.; Cell Genom, 3: 100250 |
|
GSE178896 |
| Pinter, Theresa et al. (2022) Comprehensive CRISPR-Cas9 screen identifies factors which are important for plasmablast development.; Front Immunol, 13: 979606 |
|
GSE203436 |
| Pinto, Bruno et al. (2020) Rescuing Over-activated Microglia Restores Cognitive Performance in Juvenile Animals of the Dp(16) Mouse Model of Down Syndrome.; Neuron, 108: 887-904.e12 |
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GSE137939 |
| Pinto, Luisa et al. (2008) Prospective isolation of functionally distinct radial glial subtypes--lineage and transcriptome analysis.; Mol Cell Neurosci, 38: 15-42 |
|
GSE8034 |
| Pinto, Luisa et al. (2009) AP2gamma regulates basal progenitor fate in a region- and layer-specific manner in the developing cortex.; Nat Neurosci, 12: 1229-37 |
|
GSE12134 |
| Pinto, Mariana Tomazini et al. (2014) Genes related to antiviral activity, cell migration, and lysis are differentially expressed in CD4(+) T cells in human t cell leukemia virus type 1-associated myelopathy/tropical spastic paraparesis patients.; AIDS Res Hum Retroviruses, 30: 610-22 |
|
GSE38537 |
| Pinto, Navin et al. (2023) Impact of Genomic and Clinical Factors on Outcome of Children ≥18 Months of Age with Stage 3 Neuroblastoma with Unfavorable Histology and without MYCN Amplification: A Children's Oncology Group (COG) Report.; Clin Cancer Res, 29: 1546-1556 |
|
GSE218527 |
| Pinyol, Magda et al. (2007) Inactivation of RB1 in mantle-cell lymphoma detected by nonsense-mediated mRNA decay pathway inhibition and microarray analysis.; Blood, 109: 5422-9 |
|
GSE6728 |
| Piovan, Erich et al. (2013) Direct reversal of glucocorticoid resistance by AKT inhibition in acute lymphoblastic leukemia.; Cancer Cell, 24: 766-76 |
|
GSE32215 GSE41062 |
| Piras, Ignazio S et al. (2019) Transcriptome Changes in the Alzheimer's Disease Middle Temporal Gyrus: Importance of RNA Metabolism and Mitochondria-Associated Membrane Genes.; J Alzheimers Dis, 70: 691-713 |
|
GSE132903 |
| Piras, Ignazio S et al. (2020) Transcriptional profiling of multiple system atrophy cerebellar tissue highlights differences between the parkinsonian and cerebellar sub-types of the disease.; Acta Neuropathol Commun, 8: 76 |
|
GSE199724 GSE199715 GSE199258 |
| Piret, Sian E et al. (2021) Loss of proximal tubular transcription factor Krüppel-like factor 15 exacerbates kidney injury through loss of fatty acid oxidation.; Kidney Int, 100: 1250-1267 |
|
GSE150098 |
| Piña, Jeremie Oliver et al. (2023) Integrated spatiotemporal transcriptomic resolution of embryonic palate osteogenesis.; bioRxiv, [no vol.]: [no pages] |
|
GSE205446 |
| Piñeiro-Sabarís, Rebeca et al. (2024) Deficient GATA6-CXCR7 signaling leads to bicuspid aortic valve.; Dis Model Mech, 17: [no pages] |
|
GSE255237 |