List of all 16,887 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Pereira, Ethel R et al. (2010) Transcriptional and post-transcriptional regulation of proangiogenic factors by the unfolded protein response.; PLoS One, 5: [no pages] |
|
GSE21979 |
| Pereira, Maria et al. (2017) Direct Reprogramming of Resident NG2 Glia into Neurons with Properties of Fast-Spiking Parvalbumin-Containing Interneurons.; Stem Cell Reports, 9: 742-751 |
|
GSE101091 |
| Pereira-Fernandes, Anna et al. (2014) Toxicogenomics in the 3T3-L1 cell line, a new approach for screening of obesogenic compounds.; Toxicol Sci, 140: 352-63 |
|
GSE53004 |
| Perekatt, Ansu O et al. (2014) YY1 is indispensable for Lgr5+ intestinal stem cell renewal.; Proc Natl Acad Sci U S A, 111: 7695-700 |
|
GSE53496 |
| Perera, Surangi N et al. (2020) Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach.; Glia, 68: 2550-2584 |
|
GSE138596 |
| Peretz, Alon et al. (2007) Diesel exhaust inhalation and assessment of peripheral blood mononuclear cell gene transcription effects: an exploratory study of healthy human volunteers.; Inhal Toxicol, 19: 1107-19 |
|
GSE7462 |
| Perez, Jessica Marie et al. (2021) Hippocampal subfield transcriptome analysis in schizophrenia psychosis.; Mol Psychiatry, 26: 2577-2589 |
|
GSE138082 |
| Perez, Julio D et al. (2015) Quantitative and functional interrogation of parent-of-origin allelic expression biases in the brain.; Elife, 4: e07860 |
|
GSE67556 |
| Perez, Mario F et al. (2023) Transcriptomic responses in the blood and sputum of cigarette smokers compared to e-cigarette vapers.; Respir Res, 24: 134 |
|
GSE223736 |
| Perez-Cervantes, Carlos et al. (2020) Enhancer transcription identifiescis-regulatory elements for photoreceptor cell types.; Development, 147: [no pages] |
|
GSE136564 |
| Perez-Gomez, Anabel et al. (2018) A phenotypic Caenorhabditis elegans screen identifies a selective suppressor of antipsychotic-induced hyperphagia.; Nat Commun, 9: 5272 |
|
GSE119772 |
| Perez-Sisques, Leticia et al. (2024) The intellectual disability risk geneKdm5bregulates long term memory consolidation in the hippocampus.; J Neurosci, [no vol.]: [no pages] |
|
GSE240887 |
| Perkins, James R et al. (2014) A comparison of RNA-seq and exon arrays for whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat.; Mol Pain, 10: 7 |
|
GSE53762 GSE53860 GSE53764 |
| Perlman, Brent S et al. (2024) Enhancer-promoter hubs organize transcriptional networks promoting oncogenesis and drug resistance.; Nat Commun, 15: 8070 |
|
GSE268227 |
| Permenter, Matthew G et al. (2011) Exposure to nickel, chromium, or cadmium causes distinct changes in the gene expression patterns of a rat liver derived cell line.; PLoS One, 6: e27730 |
|
GSE31503 |
| Permenter, Matthew G et al. (2013) Exposure to cobalt causes transcriptomic and proteomic changes in two rat liver derived cell lines.; PLoS One, 8: e83751 |
|
GSE51207 |
| Perner, Florian et al. (2022) YBX1 mediates translation of oncogenic transcripts to control cell competition in AML.; Leukemia, 36: 426-437 |
|
GSE175714 GSE175713 |
| Pernice, Helena F et al. (2019) Altered Glutamate Receptor Ionotropic Delta Subunit 2 Expression in Stau2-Deficient Cerebellar Purkinje Cells in the Adult Brain.; Int J Mol Sci, 20: [no pages] |
|
GSE126996 |
| Pernin, Florian et al. (2024) Regulation of stress granule formation in human oligodendrocytes.; Nat Commun, 15: 1524 |
|
GSE249381 |
| Perou, C M et al. (1999) Distinctive gene expression patterns in human mammary epithelial cells and breast cancers.; Proc Natl Acad Sci U S A, 96: 9212-7 |
|
GSE53 |
| Perou, C M et al. (2000) Molecular portraits of human breast tumours.; Nature, 406: 747-52 |
|
GSE61 |
| Perrin, Laurent et al. (2018) Transcriptomic analyses reveal rhythmic and CLOCK-driven pathways in human skeletal muscle.; Elife, 7: [no pages] |
|
GSE108539 GSE109825 |
| Perriot, Sylvain et al. (2018) Human Induced Pluripotent Stem Cell-Derived Astrocytes Are Differentially Activated by Multiple Sclerosis-Associated Cytokines.; Stem Cell Reports, 11: 1199-1210 |
|
GSE120411 |
| Perron, Isaac J et al. (2018) Dietary challenges differentially affect activity and sleep/wake behavior in mus musculus: Isolating independent associations with diet/energy balance and body weight.; PLoS One, 13: e0196743 |
|
GSE104709 |
| Perrone-Bizzozero, Nora I et al. (2011) Increased expression of axogenesis-related genes and mossy fibre length in dentate granule cells from adult HuD overexpressor mice.; ASN Neuro, 3: 259-70 |
|
GSE11147 GSE2005 |
| Perry, Carly R et al. (2011) Differential expression of chemokine and matrix re-modelling genes is associated with contrasting schistosome-induced hepatopathology in murine models.; PLoS Negl Trop Dis, 5: e1178 |
|
GSE25713 |
| Perry, Rotem Ben-Tov et al. (2018) Regulation of Neuroregeneration by Long Noncoding RNAs.; Mol Cell, 72: 553-567.e5 |
|
GSE111497 |
| Peruzzotti-Jametti, L et al. (2024) Mitochondrial complex I activity in microglia sustains neuroinflammation.; Nature, 628: 195-203 |
|
GSE248170 |
| Pervouchine, Dmitri D et al. (2015) Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression.; Nat Commun, 6: 5903 |
|
GSE36025 |
| Pescatori, Mario et al. (2007) Gene expression profiling in the early phases of DMD: a constant molecular signature characterizes DMD muscle from early postnatal life throughout disease progression.; FASEB J, 21: 1210-26 |
|
GSE6011 |
| Peslak, Scott A et al. (2020) HRI depletion cooperates with pharmacologic inducers to elevate fetal hemoglobin and reduce sickle cell formation.; Blood Adv, 4: 4560-4572 |
|
GSE150341 |
| Pesson, Marine et al. (2014) A dedicated microarray for in-depth analysis of pre-mRNA splicing events: application to the study of genes involved in the response to targeted anticancer therapies.; Mol Cancer, 13: 9 |
|
GSE50467 |
| Pesson, Marine et al. (2014) A gene expression and pre-mRNA splicing signature that marks the adenoma-adenocarcinoma progression in colorectal cancer.; PLoS One, 9: e87761 |
|
GSE50114 GSE50115 GSE50117 |
| Petalidis, Lawrence P et al. (2008) Improved grading and survival prediction of human astrocytic brain tumors by artificial neural network analysis of gene expression microarray data.; Mol Cancer Ther, 7: 1013-24 |
|
GSE1993 |
| Peter, Benjamin et al. (2024) Perivascular B cells link intestinal angiogenesis to immunity and to the gut-brain axis during neuroinflammation.; J Autoimmun, 148: 103292 |
|
GSE271603 |
| Peter, Manuel et al. (2021) Rapid nucleus-scale reorganization of chromatin in neurons enables transcriptional adaptation for memory consolidation.; PLoS One, 16: e0244038 |
|
GSE94826 |
| Peters, Owen M et al. (2015) Human C9ORF72 Hexanucleotide Expansion Reproduces RNA Foci and Dipeptide Repeat Proteins but Not Neurodegeneration in BAC Transgenic Mice.; Neuron, 88: 902-909 |
|
GSE74973 |
| Petersen, Jonas et al. (2024) GLP-1-directed NMDA receptor antagonism for obesity treatment.; Nature, 629: 1133-1141 |
|
GSE244607 GSE245727 |
| Petersen, Mark A et al. (2017) Fibrinogen Activates BMP Signaling in Oligodendrocyte Progenitor Cells and Inhibits Remyelination after Vascular Damage.; Neuron, 96: 1003-1012.e7 |
|
GSE104449 GSE104448 |
| Petersen, Mark A et al. (2021) BMP receptor blockade overcomes extrinsic inhibition of remyelination and restores neurovascular homeostasis.; Brain, 144: 2291-2301 |
|
GSE166675 |
| Peterson, Kevin A et al. (2012) Neural-specific Sox2 input and differential Gli-binding affinity provide context and positional information in Shh-directed neural patterning.; Genes Dev, 26: 2802-16 |
|
GSE42565 |
| Petrelli, Annalisa et al. (2013) MicroRNA/gene profiling unveils early molecular changes and nuclear factor erythroid related factor 2 (NRF2) activation in a rat model recapitulating human hepatocellular carcinoma (HCC).; Hepatology, [no vol.]: [no pages] |
|
GSE44106 |
| Petretto, Enrico et al. (2008) Integrated genomic approaches implicate osteoglycin (Ogn) in the regulation of left ventricular mass.; Nat Genet, 40: 546-52 |
|
GSE10161 |
| Petrie, Michael A et al. (2020) Impact of short- and long-term electrically induced muscle exercise on gene signaling pathways, gene expression, and PGC1a methylation in men with spinal cord injury.; Physiol Genomics, 52: 71-80 |
|
GSE142426 |
| Petrocelli, Jonathan J et al. (2021) Metformin and leucine increase satellite cells and collagen remodeling during disuse and recovery in aged muscle.; FASEB J, 35: e21862 |
|
GSE167462 |
| Petrocelli, Jonathan J et al. (2023) Cellular senescence and disrupted proteostasis induced by myotube atrophy are prevented with low-dose metformin and leucine cocktail.; Aging (Albany NY), 15: 1808-1832 |
|
GSE221941 |
| Petrogiannakis, Georgios et al. (2025) In vitrohigh-content screening reveals miR-429 as a protective molecule in photoreceptor degeneration.; Mol Ther Nucleic Acids, 36: 102434 |
|
GSE272674 |
| Petrosino, Jennifer M et al. (2021) Paracardial fat remodeling affects systemic metabolism through alcohol dehydrogenase 1.; J Clin Invest, 131: [no pages] |
|
GSE162779 |
| Petrus, Paul et al. (2020) Glutamine Links Obesity to Inflammation in Human White Adipose Tissue.; Cell Metab, 31: 375-390.e11 |
|
GSE140424 |
| Petrus, Paul et al. (2022) Tryptophan metabolism is a physiological integrator regulating circadian rhythms.; Mol Metab, 64: 101556 |
|
GSE190145 GSE186242 |
| Petschner, Peter et al. (2013) Gene expression analysis indicates CB1 receptor upregulation in the hippocampus and neurotoxic effects in the frontal cortex 3 weeks after single-dose MDMA administration in Dark Agouti rats.; BMC Genomics, 14: 930 |
|
GSE47541 |
| Pettit, Ashley P et al. (2012) Alteration of peripheral blood monocyte gene expression in humans following diesel exhaust inhalation.; Inhal Toxicol, 24: 172-81 |
|
GSE25531 |
| Pewzner-Jung, Yael et al. (2021) Brain pathology and cerebellar purkinje cell loss in a mouse model of chronic neuronopathic Gaucher disease.; Prog Neurobiol, 197: 101939 |
|
GSE157992 |
| Peyvandi, Sanam et al. (2024) Tumor-educated Gr1+CD11b+ cells drive breast cancer metastasis via OSM/IL-6/JAK-induced cancer cell plasticity.; J Clin Invest, 134: [no pages] |
|
GSE216080 GSE216078 GSE216079 |
| Pezoldt, Joern et al. (2022) Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34+stromal cell subsets.; Nat Commun, 13: 7227 |
|
GSE171901 |
| Pezzini, Francesco et al. (2017) The Networks of Genes Encoding Palmitoylated Proteins in Axonal and Synaptic Compartments Are Affected in PPT1 Overexpressing Neuronal-Like Cells.; Front Mol Neurosci, 10: 266 |
|
GSE98834 |
| Pezzini, Francesco et al. (2017) Transcriptomic Profiling Discloses Molecular and Cellular Events Related to Neuronal Differentiation in SH-SY5Y Neuroblastoma Cells.; Cell Mol Neurobiol, 37: 665-682 |
|
GSE77383 |
| Pfaller, Anna M et al. (2024) The glucocorticoid receptor as a master regulator of the Müller cell response to diabetic conditions in mice.; J Neuroinflammation, 21: 33 |
|
GSE236627 |
| Pfau, Madeline L et al. (2016) Integrative Analysis of Sex-Specific microRNA Networks Following Stress in Mouse Nucleus Accumbens.; Front Mol Neurosci, 9: 144 |
|
GSE90962 |
| Pfeifer, Charles W et al. (2023) Dysregulated CD200-CD200R signaling in early diabetes modulates microglia-mediated retinopathy.; Proc Natl Acad Sci U S A, 120: e2308214120 |
|
GSE238008 |
| Pfeiffer, Martin J et al. (2013) Reprogramming of two somatic nuclei in the same ooplasm leads to pluripotent embryonic stem cells.; Stem Cells, 31: 2343-53 |
|
GSE36468 |
| Pfenninger, Cosima V et al. (2011) Prospectively isolated CD133/CD24-positive ependymal cells from the adult spinal cord and lateral ventricle wall differ in their long-term in vitro self-renewal and in vivo gene expression.; Glia, 59: 68-81 |
|
GSE18528 |
| Pfister, Edith L et al. (2017) Safe and Efficient Silencing with a Pol II, but Not a Pol lII, Promoter Expressing an Artificial miRNA Targeting Human Huntingtin.; Mol Ther Nucleic Acids, 7: 324-334 |
|
GSE97353.2 |
| Pfister, Thomas D et al. (2009) Topoisomerase I levels in the NCI-60 cancer cell line panel determined by validated ELISA and microarray analysis and correlation with indenoisoquinoline sensitivity.; Mol Cancer Ther, 8: 1878-84 |
|
GSE32474 |
| Pfisterer, Ulrich et al. (2016) Small molecules increase direct neural conversion of human fibroblasts.; Sci Rep, 6: 38290 |
|
GSE83896 |
| Pflüger-Müller, Beatrice et al. (2020) The endocannabinoid anandamide has an anti-inflammatory effect on CCL2 expression in vascular smooth muscle cells.; Basic Res Cardiol, 115: 34 |
|
GSE131732 |
| Pfurr, Sabrina et al. (2017) The E2A splice variant E47 regulates the differentiation of projection neurons via p57(KIP2) during cortical development.; Development, 144: 3917-3931 |
|
GSE104065 |
| Pham, Alexander M et al. (2023) Merkel Cell Polyomavirus Large T Antigen Induces Cellular Senescence for Host Growth Arrest and Viral Genome Persistence through Its Unique Domain.; Cells, 12: [no pages] |
|
GSE189291 |
| Pham, Duy et al. (2023) Batf stabilizes Th17 cell development via impaired Stat5 recruitment of Ets1-Runx1 complexes.; EMBO J, 42: e109803 |
|
GSE167418 |
| Pham, Thang L et al. (2020) Novel RvD6 stereoisomer induces corneal nerve regeneration and wound healing post-injury by modulating trigeminal transcriptomic signature.; Sci Rep, 10: 4582 |
|
GSE138685 |
| Pham, X et al. (2016) The DPYSL2 gene connects mTOR and schizophrenia.; Transl Psychiatry, 6: e933 |
|
GSE82237 |
| Phan, Khanh P et al. (2023) COMMD10 Is Essential for Neural Plate Development during Embryogenesis.; J Dev Biol, 11: [no pages] |
|
GSE216492 |
| Phan, Vinhthuy et al. (2009) Analyzing microarray data with transitive directed acyclic graphs.; J Bioinform Comput Biol, 7: 135-56 |
|
GSE8880 |
| Phani, Sudarshan et al. (2010) VTA neurons show a potentially protective transcriptional response to MPTP.; Brain Res, 1343: 1-13 |
|
GSE17542 |
| Phatnani, Hemali P et al. (2013) Intricate interplay between astrocytes and motor neurons in ALS.; Proc Natl Acad Sci U S A, 110: E756-65 |
|
GSE43879 |
| Phelan, David E et al. (2024) Orphan Nuclear Receptor Family 4A (NR4A) Members NR4A2 and NR4A3 Selectively Modulate Elements of the Monocyte Response to Buffered Hypercapnia.; Int J Mol Sci, 25: [no pages] |
|
GSE251925 GSE178391 |
| Phelan, James D et al. (2024) Response to Bruton's tyrosine kinase inhibitors in aggressive lymphomas linked to chronic selective autophagy.; Cancer Cell, 42: 238-252.e9 |
|
GSE227465 |
| Phelan, Michael Alexander et al. (2020) Soy protein nanofiber scaffolds for uniform maturation of hiPSC-derived retinal pigment epithelium.; Tissue Eng Part C Methods, [no vol.]: [no pages] |
|
GSE153645 |
| Pérez Millán, María Inés et al. (2016) PROP1 triggers epithelial-mesenchymal transition-like process in pituitary stem cells.; Elife, 5: [no pages] |
|
GSE77357 |
| Pérez-Cabello, Jesús A et al. (2023) MAPK/MAK/MRK overlapping kinase (MOK) controls microglial inflammatory/type-I IFN responses via Brd4 and is involved in ALS.; Proc Natl Acad Sci U S A, 120: e2302143120 |
|
GSE234160 GSE233719 |
| Pérez-Galán, Patricia et al. (2011) Bortezomib resistance in mantle cell lymphoma is associated with plasmacytic differentiation.; Blood, 117: 542-52 |
|
GSE20915 |
| Pérez-González, Marta et al. (2021) Identifying the Main Functional Pathways Associated with Cognitive Resilience to Alzheimer's Disease.; Int J Mol Sci, 22: [no pages] |
|
GSE180968 |
| Pérez-Mancera, Pedro A et al. (2012) The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma.; Nature, 486: 266-70 |
|
GSE36924 |
| Pérez-Salvia, Montserrat et al. (2017) Bromodomain inhibition shows antitumoral activity in mice and human luminal breast cancer.; Oncotarget, 8: 51621-51629 |
|
GSE95287 |
| Pérez-Schindler, Joaquín et al. (2012) The corepressor NCoR1 antagonizes PGC-1? and estrogen-related receptor ? in the regulation of skeletal muscle function and oxidative metabolism.; Mol Cell Biol, 32: 4913-24 |
|
GSE40439 |
| Pétremand, Jannick et al. (2009) Involvement of 4E-BP1 in the protection induced by HDLs on pancreatic beta-cells.; Mol Endocrinol, 23: 1572-86 |
|
GSE17647 |