List of all 16,857 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Pedroni, Silvia M A et al. (2014) Pregnancy in obese mice protects selectively against visceral adiposity and is associated with increased adipocyte estrogen signalling.; PLoS One, 9: e94680 |
|
GSE48811 |
| Pedrosa, Erika et al. (2011) Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells.; J Neurogenet, 25: 88-103 |
|
GSE26629 |
| Peek, Stacey L et al. (2022) p53-mediated neurodegeneration in the absence of the nuclear protein Akirin2.; iScience, 25: 103814 |
|
GSE178844.1 GSE178844.2 |
| Peel, Michael T et al. (2018) Transcriptome Analyses of Female Somatotropes and Lactotropes Reveal Novel Regulators of Cell Identity in the Pituitary.; Endocrinology, 159: 3965-3980 |
|
GSE118863 |
| Peeters, Janneke G C et al. (2015) Inhibition of Super-Enhancer Activity in Autoinflammatory Site-Derived T Cells Reduces Disease-Associated Gene Expression.; Cell Rep, 12: 1986-96 |
|
GSE71595 |
| Peffer, Melanie E et al. (2014) Caveolin-1 regulates genomic action of the glucocorticoid receptor in neural stem cells.; Mol Cell Biol, 34: 2611-23 |
|
GSE49804 |
| Pehkonen, Henna et al. (2018) Liprin-α1 modulates cancer cell signaling by transmembrane protein CD82 in adhesive membrane domains linked to cytoskeleton.; Cell Commun Signal, 16: 41 |
|
GSE108392 |
| Pei, Fei et al. (2023) Sensory nerve niche regulates mesenchymal stem cell homeostasis via FGF/mTOR/autophagy axis.; Nat Commun, 14: 344 |
|
GSE197785 |
| Pei, Huadong et al. (2009) FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt.; Cancer Cell, 16: 259-66 |
|
GSE16515 |
| Pei, Liming et al. (2011) Thyroid hormone receptor repression is linked to type I pneumocyte-associated respiratory distress syndrome.; Nat Med, 17: 1466-72 |
|
GSE30661 |
| Pei, Liming et al. (2015) Dependence of hippocampal function on ERR?-regulated mitochondrial metabolism.; Cell Metab, 21: 628-36 |
|
GSE47133 |
| Pei, Luxin et al. (2021) Plasma Metabolomics Reveals Dysregulated Metabolic Signatures in HIV-Associated Immune Reconstitution Inflammatory Syndrome.; Front Immunol, 12: 693074 |
|
GSE173697.1 GSE173697.2 |
| Pei, Yanxin et al. (2012) An animal model of MYC-driven medulloblastoma.; Cancer Cell, 21: 155-67 |
|
GSE34126 |
| Pei, Yanxin et al. (2016) HDAC and PI3K Antagonists Cooperate to Inhibit Growth of MYC-Driven Medulloblastoma.; Cancer Cell, 29: 311-323 |
|
GSE69410 |
| Peinado-Serrano, Javier et al. (2022) A Six-Gene Prognostic and Predictive Radiotherapy-Based Signature for Early and Locally Advanced Stages in Non-Small-Cell Lung Cancer.; Cancers (Basel), 14: [no pages] |
|
GSE197109 |
| Peiris, Heshan et al. (2018) Discovering human diabetes-risk gene function with genetics and physiological assays.; Nat Commun, 9: 3855 |
|
GSE116369 |
| Peixoto, Lucia et al. (2015) How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets.; Nucleic Acids Res, 43: 7664-74 |
|
GSE63412 |
| Peixoto, Lucia L et al. (2015) Memory acquisition and retrieval impact different epigenetic processes that regulate gene expression.; BMC Genomics, 16 Suppl 5: S5 |
|
GSE50423 |
| Peleg, Shahaf et al. (2010) Altered histone acetylation is associated with age-dependent memory impairment in mice.; Science, 328: 753-6 |
|
GSE20270 |
| Pellagatti, A et al. (2010) Deregulated gene expression pathways in myelodysplastic syndrome hematopoietic stem cells.; Leukemia, 24: 756-64 |
|
GSE19429 |
| Pellagatti, Andrea et al. (2006) Gene expression profiles of CD34+ cells in myelodysplastic syndromes: involvement of interferon-stimulated genes and correlation to FAB subtype and karyotype.; Blood, 108: 337-45 |
|
GSE4619 |
| Pellegrini, Kathryn L et al. (2016) Application of small RNA sequencing to identify microRNAs in acute kidney injury and fibrosis.; Toxicol Appl Pharmacol, 312: 42-52 |
|
GSE61328 |
| Pellegrini, Matteo et al. (2008) Expression profile of CREB knockdown in myeloid leukemia cells.; BMC Cancer, 8: 264 |
|
GSE12056 |
| Pellegrino, R et al. (2012) Whole blood genome-wide gene expression profile in males after prolonged wakefulness and sleep recovery.; Physiol Genomics, 44: 1003-12 |
|
GSE37667 |
| Pelosi, Emanuele et al. (2013) Constitutively active Foxo3 in oocytes preserves ovarian reserve in mice.; Nat Commun, 4: 1843 |
|
GSE45389 |
| Peltier, Daniel C et al. (2010) Human neuronal cells possess functional cytoplasmic and TLR-mediated innate immune pathways influenced by phosphatidylinositol-3 kinase signaling.; J Immunol, 184: 7010-21 |
|
GSE16450 GSE16451 |
| Peluffo, Guillermo et al. (2019) EN1Is a Transcriptional Dependency in Triple-Negative Breast Cancer Associated with Brain Metastasis.; Cancer Res, 79: 4173-4183 |
|
GSE120957 |
| Pembroke, William G et al. (2015) Temporal transcriptomics suggest that twin-peaking genes reset the clock.; Elife, 4: [no pages] |
|
GSE72095 |
| Pena, Olga M et al. (2014) An Endotoxin Tolerance Signature Predicts Sepsis and Organ Dysfunction at Initial Clinical Presentation.; EBioMedicine, 1: 64-71 |
|
GSE63311 |
| Pencovich, Niv et al. (2011) Dynamic combinatorial interactions of RUNX1 and cooperating partners regulates megakaryocytic differentiation in cell line models.; Blood, 117: e1-14 |
|
GSE24778 |
| Pencovich, Niv et al. (2013) Cell-autonomous function of Runx1 transcriptionally regulates mouse megakaryocytic maturation.; PLoS One, 8: e64248 |
|
GSE45373 |
| Pendergrass, Sarah A et al. (2010) Limited systemic sclerosis patients with pulmonary arterial hypertension show biomarkers of inflammation and vascular injury.; PLoS One, 5: e12106 |
|
GSE19617 |
| Pendergrass, Sarah A et al. (2012) Intrinsic gene expression subsets of diffuse cutaneous systemic sclerosis are stable in serial skin biopsies.; J Invest Dermatol, 132: 1363-73 |
|
GSE32413 |
| Pendse, Salil N et al. (2017) Information-dependent enrichment analysis reveals time-dependent transcriptional regulation of the estrogen pathway of toxicity.; Arch Toxicol, 91: 1749-1762 |
|
GSE84981 |
| Pendyala, Swaroop et al. (2011) Diet-induced weight loss reduces colorectal inflammation: implications for colorectal carcinogenesis.; Am J Clin Nutr, 93: 234-42 |
|
GSE20931 |
| Peng, Audrey Yi Tyan et al. (2020) Loss of TDP-43 in astrocytes leads to motor deficits by triggering A1-like reactive phenotype and triglial dysfunction.; Proc Natl Acad Sci U S A, 117: 29101-29112 |
|
GSE156542 |
| Peng, Bing-Ling et al. (2024) A CARM1 Inhibitor Potently Suppresses Breast Cancer Both In Vitro and In Vivo.; J Med Chem, 67: 7921-7934 |
|
GSE243316 |
| Peng, Changgeng et al. (2017) miR-183 cluster scales mechanical pain sensitivity by regulating basal and neuropathic pain genes.; Science, 356: 1168-1171 |
|
GSE99265 |
| Peng, Changgeng et al. (2018) Termination of cell-type specification gene programs by the miR-183 cluster determines the population sizes of low-threshold mechanosensitive neurons.; Development, 145: [no pages] |
|
GSE110714 |
| Peng, Jianhua et al. (2017) High-Throughput Sequencing and Co-Expression Network Analysis of lncRNAs and mRNAs in Early Brain Injury Following Experimental Subarachnoid Haemorrhage.; Sci Rep, 7: 46577 |
|
GSE79416 |
| Peng, Jiayin et al. (2023) Gli1 marks a sentinel muscle stem cell population for muscle regeneration.; Nat Commun, 14: 6993 |
|
GSE239944 |
| Peng, Katherine Y et al. (2024) Apolipoprotein E2 Expression Alters Endosomal Pathways in a Mouse Model With Increased Brain Exosome Levels During Aging.; Traffic, 25: e12937 |
|
GSE234711 |
| Peng, Ruoqi et al. (2013) Bleomycin induces molecular changes directly relevant to idiopathic pulmonary fibrosis: a model for "active" disease.; PLoS One, 8: e59348 |
|
GSE40151 |
| Peng, Shaohua et al. (2013) Tumor grafts derived from patients with head and neck squamous carcinoma authentically maintain the molecular and histologic characteristics of human cancers.; J Transl Med, 11: 198 |
|
GSE45153 |
| Peng, Shaomin et al. (2013) Engineering a blood-retinal barrier with human embryonic stem cell-derived retinal pigment epithelium: transcriptome and functional analysis.; Stem Cells Transl Med, 2: 534-44 |
|
GSE36695 |
| Peng, Tao et al. (2009) Evasion of the mucosal innate immune system by herpes simplex virus type 2.; J Virol, 83: 12559-68 |
|
GSE18527 |
| Peng, Xinxia et al. (2009) Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers.; BMC Genomics, 10: 373 |
|
GSE15331 |
| Peng, Yi-Rong et al. (2017) Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell.; Neuron, 95: 869-883.e6 |
|
GSE90652 GSE90648 |
| Peng, Yi-Rong et al. (2020) Binary Fate Choice between Closely Related Interneuronal Types Is Determined by a Fezf1-Dependent Postmitotic Transcriptional Switch.; Neuron, 105: 464-474.e6 |
|
GSE132505 |
| Peng, Zhao Feng et al. (2012) Multifaceted role of nitric oxide in an in vitro mouse neuronal injury model: transcriptomic profiling defines the temporal recruitment of death signalling cascades.; J Cell Mol Med, 16: 41-58 |
|
GSE22087 |
| Penkov, Dmitry et al. (2013) Analysis of the DNA-binding profile and function of TALE homeoproteins reveals their specialization and specific interactions with Hox genes/proteins.; Cell Rep, 3: 1321-33 |
|
GSE39605 |
| Penney, Jay et al. (2024) iPSC-derived microglia carrying the TREM2 R47H/+ mutation are proinflammatory and promote synapse loss.; Glia, 72: 452-469 |
|
GSE241858 |
| Pennisi, Angela et al. (2010) Consequences of daily administered parathyroid hormone on myeloma growth, bone disease, and molecular profiling of whole myelomatous bone.; PLoS One, 5: e15233 |
|
GSE24068 |
| Pensieri, Pasquale et al. (2021) Photoreceptor cKO of OTX2 enhances OTX2 intercellular transfer in the retina and causes photophobia.; eNeuro, [no vol.]: [no pages] |
|
GSE138097 |
| Pensold, Daniel et al. (2020) DNA Methylation-Mediated Modulation of Endocytosis as Potential Mechanism for Synaptic Function Regulation in Murine Inhibitory Cortical Interneurons.; Cereb Cortex, 30: 3921-3937 |
|
GSE145025 |
| Pepin, François et al. (2012) Gene-expression profiling of microdissected breast cancer microvasculature identifies distinct tumor vascular subtypes.; Breast Cancer Res, 14: R120 |
|
GSE15363 |
| Pepino, Lucie et al. (2023) Formalin-evoked pain triggers sex-specific behavior and spinal immune response.; Sci Rep, 13: 9515 |
|
GSE226443 |
| Pepper, C et al. (2007) Highly purified CD38+ and CD38- sub-clones derived from the same chronic lymphocytic leukemia patient have distinct gene expression signatures despite their monoclonal origin.; Leukemia, 21: 687-96 |
|
GSE6321 |
| Peppercorn, Katie et al. (2022) Secreted Amyloid Precursor Protein Alpha, a Neuroprotective Protein in the Brain Has Widespread Effects on the Transcriptome and Proteome of Human Inducible Pluripotent Stem Cell-Derived Glutamatergic Neurons Related to Memory Mechanisms.; Front Neurosci, 16: 858524 |
|
GSE197725 |
| Pera, Joanna et al. (2010) Gene expression profiles in human ruptured and unruptured intracranial aneurysms: what is the role of inflammation?; Stroke, 41: 224-31 |
|
GSE15629 |
| Pera, Joanna et al. (2013) Gene expression profiling of blood in ruptured intracranial aneurysms: in search of biomarkers.; J Cereb Blood Flow Metab, 33: 1025-31 |
|
GSE36791 |
| Peraldo-Neia, Caterina et al. (2011) Epidermal Growth Factor Receptor (EGFR) mutation analysis, gene expression profiling and EGFR protein expression in primary prostate cancer.; BMC Cancer, 11: 31 |
|
GSE16120 GSE14206 |
| Perazza, Laís R et al. (2023) Protectin DX as a therapeutic strategy against frailty in mice.; Geroscience, 45: 2601-2627 |
|
GSE228901 |
| Percharde, Michelle et al. (2012) Ncoa3 functions as an essential Esrrb coactivator to sustain embryonic stem cell self-renewal and reprogramming.; Genes Dev, 26: 2286-98 |
|
GSE40192 |
| Percopo, Caroline M et al. (2015) Immunobiotic Lactobacillus administered post-exposure averts the lethal sequelae of respiratory virus infection.; Antiviral Res, 121: 109-19 |
|
GSE66721 |
| Peredo, Joan et al. (2014) Human Staufen1 associates to miRNAs involved in neuronal cell differentiation and is required for correct dendritic formation.; PLoS One, 9: e113704 |
|
GSE61732 |
| Pereira Luppi, Milagros et al. (2021) Sox6 expression distinguishes dorsally and ventrally biased dopamine neurons in the substantia nigra with distinctive properties and embryonic origins.; Cell Rep, 37: 109975 |
|
GSE185480 |
| Pereira, Ana Helena M et al. (2020) MEF2C repressor variant deregulation leads to cell cycle re-entry and development of heart failure.; EBioMedicine, 51: 102571 |
|
GSE99748 |
| Pereira, Carlos-Filipe et al. (2013) Induction of a hemogenic program in mouse fibroblasts.; Cell Stem Cell, 13: 205-18 |
|
GSE47497 |
| Pereira, Ethel R et al. (2010) Transcriptional and post-transcriptional regulation of proangiogenic factors by the unfolded protein response.; PLoS One, 5: [no pages] |
|
GSE21979 |
| Pereira, Maria et al. (2017) Direct Reprogramming of Resident NG2 Glia into Neurons with Properties of Fast-Spiking Parvalbumin-Containing Interneurons.; Stem Cell Reports, 9: 742-751 |
|
GSE101091 |
| Pereira-Fernandes, Anna et al. (2014) Toxicogenomics in the 3T3-L1 cell line, a new approach for screening of obesogenic compounds.; Toxicol Sci, 140: 352-63 |
|
GSE53004 |
| Perekatt, Ansu O et al. (2014) YY1 is indispensable for Lgr5+ intestinal stem cell renewal.; Proc Natl Acad Sci U S A, 111: 7695-700 |
|
GSE53496 |
| Perera, Surangi N et al. (2020) Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach.; Glia, 68: 2550-2584 |
|
GSE138596 |
| Peretz, Alon et al. (2007) Diesel exhaust inhalation and assessment of peripheral blood mononuclear cell gene transcription effects: an exploratory study of healthy human volunteers.; Inhal Toxicol, 19: 1107-19 |
|
GSE7462 |
| Perez, Jessica Marie et al. (2021) Hippocampal subfield transcriptome analysis in schizophrenia psychosis.; Mol Psychiatry, 26: 2577-2589 |
|
GSE138082 |
| Perez, Julio D et al. (2015) Quantitative and functional interrogation of parent-of-origin allelic expression biases in the brain.; Elife, 4: e07860 |
|
GSE67556 |
| Perez, Mario F et al. (2023) Transcriptomic responses in the blood and sputum of cigarette smokers compared to e-cigarette vapers.; Respir Res, 24: 134 |
|
GSE223736 |
| Perez-Cervantes, Carlos et al. (2020) Enhancer transcription identifiescis-regulatory elements for photoreceptor cell types.; Development, 147: [no pages] |
|
GSE136564 |
| Perez-Gomez, Anabel et al. (2018) A phenotypic Caenorhabditis elegans screen identifies a selective suppressor of antipsychotic-induced hyperphagia.; Nat Commun, 9: 5272 |
|
GSE119772 |
| Perez-Sisques, Leticia et al. (2024) The intellectual disability risk geneKdm5bregulates long term memory consolidation in the hippocampus.; J Neurosci, [no vol.]: [no pages] |
|
GSE240887 |
| Perkins, James R et al. (2014) A comparison of RNA-seq and exon arrays for whole genome transcription profiling of the L5 spinal nerve transection model of neuropathic pain in the rat.; Mol Pain, 10: 7 |
|
GSE53762 GSE53860 GSE53764 |
| Peña, Catherine J et al. (2017) Early life stress confers lifelong stress susceptibility in mice via ventral tegmental area OTX2.; Science, 356: 1185-1188 |
|
GSE89692 |
| Peña-Llopis, Samuel et al. (2012) BAP1 loss defines a new class of renal cell carcinoma.; Nat Genet, 44: 751-9 |
|
GSE36895 |
| Pénzes, Zsófia et al. (2024) Anandamide modulation of monocyte-derived Langerhans cells: implications for immune homeostasis and skin inflammation.; Front Immunol, 15: 1423776 |
|
GSE266075 |
| Pérez Millán, María Inés et al. (2016) PROP1 triggers epithelial-mesenchymal transition-like process in pituitary stem cells.; Elife, 5: [no pages] |
|
GSE77357 |
| Pérez-Cabello, Jesús A et al. (2023) MAPK/MAK/MRK overlapping kinase (MOK) controls microglial inflammatory/type-I IFN responses via Brd4 and is involved in ALS.; Proc Natl Acad Sci U S A, 120: e2302143120 |
|
GSE234160 GSE233719 |
| Pérez-Galán, Patricia et al. (2011) Bortezomib resistance in mantle cell lymphoma is associated with plasmacytic differentiation.; Blood, 117: 542-52 |
|
GSE20915 |
| Pérez-González, Marta et al. (2021) Identifying the Main Functional Pathways Associated with Cognitive Resilience to Alzheimer's Disease.; Int J Mol Sci, 22: [no pages] |
|
GSE180968 |
| Pérez-Mancera, Pedro A et al. (2012) The deubiquitinase USP9X suppresses pancreatic ductal adenocarcinoma.; Nature, 486: 266-70 |
|
GSE36924 |
| Pérez-Salvia, Montserrat et al. (2017) Bromodomain inhibition shows antitumoral activity in mice and human luminal breast cancer.; Oncotarget, 8: 51621-51629 |
|
GSE95287 |
| Pérez-Schindler, Joaquín et al. (2012) The corepressor NCoR1 antagonizes PGC-1? and estrogen-related receptor ? in the regulation of skeletal muscle function and oxidative metabolism.; Mol Cell Biol, 32: 4913-24 |
|
GSE40439 |