List of all 16,827 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Paterka, Magdalena et al. (2016) Gatekeeper role of brain antigen-presenting CD11c+ cells in neuroinflammation.; EMBO J, 35: 89-101 |
|
GSE57098 |
| Patierno, Brendon M et al. (2022) Characterization of a castrate-resistant prostate cancer xenograft derived from a patient of West African ancestry.; Prostate Cancer Prostatic Dis, 25: 513-523 |
|
GSE146402 |
| Patki, Mugdha et al. (2013) The ETS domain transcription factor ELK1 directs a critical component of growth signaling by the androgen receptor in prostate cancer cells.; J Biol Chem, 288: 11047-65 |
|
GSE34589 |
| Patmore, Deanna M et al. (2020) DDX3X Suppresses the Susceptibility of Hindbrain Lineages to Medulloblastoma.; Dev Cell, 54: 455-470.e5 |
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GSE147178 |
| Patra, Milan et al. (2024) Senescence of human pancreatic beta cells enhances functional maturation through chromatin reorganization and promotes interferon responsiveness.; Nucleic Acids Res, 52: 6298-6316 |
|
GSE207816 |
| Patra-Kneuer, Maria et al. (2023) Activity of tafasitamab in combination with rituximab in subtypes of aggressive lymphoma.; Front Immunol, 14: 1220558 |
|
GSE211829 |
| Patrick, Ralph et al. (2024) The activity of early-life gene regulatory elements is hijacked in aging through pervasive AP-1-linked chromatin opening.; Cell Metab, 36: 1858-1881.e23 |
|
GSE223049 |
| Patrikainen, Maarit S et al. (2016) Altered gene expression in the lower respiratory tract of Car6 (-/-) mice.; Transgenic Res, [no vol.]: [no pages] |
|
GSE73755 |
| Patritti-Cram, Jennifer et al. (2024) NF1-dependent disruption of the blood-nerve-barrier is improved by blockade of P2RY14.; iScience, 27: 110294 |
|
GSE189189 |
| Patrício, Patrícia et al. (2015) Differential and converging molecular mechanisms of antidepressants' action in the hippocampal dentate gyrus.; Neuropsychopharmacology, 40: 338-49 |
|
GSE56028 |
| Pattacini, Laura et al. (2013) Differential regulatory T cell activity in HIV type 1-exposed seronegative individuals.; AIDS Res Hum Retroviruses, 29: 1321-9 |
|
GSE38778 |
| Pattee, Jack et al. (2022) Evaluation and characterization of expression quantitative trait analysis methods in the Hybrid Rat Diversity Panel.; Front Genet, 13: 947423 |
|
GSE199984 GSE243029 |
| Patten, Glen S et al. (2015) Resistant Starch Alters Colonic Contractility and Expression of Related Genes in Rats Fed a Western Diet.; Dig Dis Sci, [no vol.]: [no pages] |
|
GSE32312 |
| Patterson, Angela M et al. (2017) Human Gut SymbiontRoseburia hominisPromotes and Regulates Innate Immunity.; Front Immunol, 8: 1166 |
|
GSE25544 |
| Patterson, Ethan S et al. (2014) Geminin loss causes neural tube defects through disrupted progenitor specification and neuronal differentiation.; Dev Biol, 393: 44-56 |
|
GSE42052 |
| Patterson, Molly R et al. (2024) The Hippo pathway transcription factors YAP and TAZ play HPV-type dependent roles in cervical cancer.; Nat Commun, 15: 5809 |
|
GSE261673 |
| Patti, Mary Elizabeth et al. (2003) Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1.; Proc Natl Acad Sci U S A, 100: 8466-71 |
|
GSE21340 |
| Pau Ni, Ivyna Bong et al. (2010) Gene expression patterns distinguish breast carcinomas from normal breast tissues: the Malaysian context.; Pathol Res Pract, 206: 223-8 |
|
GSE15852 |
| Paudel, Praveen et al. (2020) Prenatal Alcohol Exposure Results in Sex-Specific Alterations in Circular RNA Expression in the Developing Mouse Brain.; Front Neurosci, 14: 581895 |
|
GSE154018 |
| Paudel, Siddhi N et al. (2024) Myelomodulatory treatments augment the therapeutic benefit of oncolytic viroimmunotherapy in murine models of malignant peripheral nerve sheath tumors.; Front Immunol, 15: 1384623 |
|
GSE244829 |
| Paugh, Barbara S et al. (2013) Novel oncogenic PDGFRA mutations in pediatric high-grade gliomas.; Cancer Res, 73: 6219-29 |
|
GSE46190 |
| Paul, Anirban et al. (2012) Developmental Coordination of Gene Expression between Synaptic Partners During GABAergic Circuit Assembly in Cerebellar Cortex.; Front Neural Circuits, 6: 37 |
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GSE37055 |
| Paul, Anirban et al. (2017) Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity.; Cell, 171: 522-539.e20 |
|
GSE92522 |
| Paul, Catriona et al. (2011) Aging results in differential regulation of DNA repair pathways in pachytene spermatocytes in the Brown Norway rat.; Biol Reprod, 85: 1269-78 |
|
GSE29963 |
| Paul, Jinny A et al. [Unknown date]Transcriptomic analysis of gene signatures associated with sickle pain.; Sci Data, 4: 170051 |
|
GSE86418 |
| Paul, Leena et al. (2016) Lack of Prox1 Downregulation Disrupts the Expansion and Maturation of Postnatal Murine β-Cells.; Diabetes, 65: 687-98 |
|
GSE68133 |
| Paul, Raikamal et al. (2021) MiR-592 activates the mTOR kinase, ERK1/ERK2 kinase signaling and imparts neuronal differentiation signature characteristic of group 4 medulloblastoma.; Hum Mol Genet, [no vol.]: [no pages] |
|
GSE147145 |
| Paul, Sayantanee et al. (2025) Cooperation between the Hippo and MAPK pathway activation drives acquired resistance to TEAD inhibition.; Nat Commun, 16: 1743 |
|
GSE246583 GSE246578 |
| Paul, Sunirmal et al. (2008) Development of gene expression signatures for practical radiation biodosimetry.; Int J Radiat Oncol Biol Phys, 71: 1236-1244 |
|
GSE8917 |
| Paul, Sunirmal et al. (2011) Gene expression signatures of radiation exposure in peripheral white blood cells of smokers and non-smokers.; Int J Radiat Biol, 87: 791-801 |
|
GSE23515 |
| Paul, Sunirmal et al. (2011) Prediction of in vivo radiation dose status in radiotherapy patients using ex vivo and in vivo gene expression signatures.; Radiat Res, 175: 257-65 |
|
GSE20162 |
| Paul, Sunirmal et al. (2014) Gene expression response of mice after a single dose of 137CS as an internal emitter.; Radiat Res, 182: 380-9 |
|
GSE52690 |
| Paul, Sunirmal et al. (2015) Radiation Dose-Rate Effects on Gene Expression in a Mouse Biodosimetry Model.; Radiat Res, 184: 24-32 |
|
GSE62623 |
| Paul-Clark, Mark et al. (2016) Profound Chemopreventative Effects of a Hydrogen Sulfide-Releasing NSAID in the APCMin/+ Mouse Model of Intestinal Tumorigenesis.; PLoS One, 11: e0147289 |
|
GSE76928 |
| Pauleikhoff, Laurenz et al. (2023) Transcriptional Comparison of Human and Murine Retinal Neovascularization.; Invest Ophthalmol Vis Sci, 64: 46 |
|
GSE234447 |
| Pauls, Eduardo et al. (2021) Identification and drug-induced reversion of molecular signatures of Alzheimer's disease onset and progression in AppNL-G-F, AppNL-F, and 3xTg-AD mouse models.; Genome Med, 13: 168 |
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GSE168428 GSE168429 GSE168430 |
| Paun, Alexandra et al. (2012) Genomic and genome-wide association of susceptibility to radiation-induced fibrotic lung disease in mice.; Radiother Oncol, 105: 350-7 |
|
GSE2250 |
| Pauža, Audrys G et al. (2021) Osmoregulation of the transcriptome of the hypothalamic supraoptic nucleus: A resource for the community.; J Neuroendocrinol, 33: e13007 |
|
GSE175461 |
| Pavan, Simona et al. (2013) IRF-1 expression is induced by cisplatin in ovarian cancer cells and limits drug effectiveness.; Eur J Cancer, 49: 964-73 |
|
GSE38551 |
| Pavkovic, Mira et al. (2019) Multi omics analysis of fibrotic kidneys in two mouse models.; Sci Data, 6: 92 |
|
GSE118339 |
| Pavlaki, Ioanna et al. (2018) Poly(ADP-ribosyl)ation associated changes in CTCF-chromatin binding and gene expression in breast cells.; Biochim Biophys Acta Gene Regul Mech, 1861: 718-730 |
|
GSE102237 |
| Pavlaki, Ioanna et al. (2018) The long non-coding RNAPauparpromotes KAP1-dependent chromatin changes and regulates olfactory bulb neurogenesis.; EMBO J, 37: [no pages] |
|
GSE110031 |
| Pavlopoulos, Elias et al. (2013) Molecular mechanism for age-related memory loss: the histone-binding protein RbAp48.; Sci Transl Med, 5: 200ra115 |
|
GSE46193 |
| Pavlou, Andreas et al. (2025) MAVS signaling of long-lived brain-resident myeloid cells is needed during viral encephalitis to adjust the transcriptome of CNS infiltrating CD8+T cells.; J Neuroinflammation, 22: 175 |
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GSE301540 GSE301690 |
| Pavlou, Maria Angeliki S et al. (2023) Transcriptional and Chromatin Accessibility Profiling of Neural Stem Cells Differentiating into Astrocytes Reveal Dynamic Signatures Affected under Inflammatory Conditions.; Cells, 12: [no pages] |
|
GSE225728 |
| Pavon-Eternod, Mariana et al. (2009) tRNA over-expression in breast cancer and functional consequences.; Nucleic Acids Res, 37: 7268-80 |
|
E-TABM-157 |
| Pavón, M A et al. (2012) Gene expression signatures and molecular markers associated with clinical outcome in locally advanced head and neck carcinoma.; Carcinogenesis, 33: 1707-16 |
|
GSE23036 |
| Pawliczak, Rafal et al. (2005) Influence of IFN-gamma on gene expression in normal human bronchial epithelial cells: modulation of IFN-gamma effects by dexamethasone.; Physiol Genomics, 23: 28-45 |
|
GSE1815 |
| Pawlowski, Traci L et al. (2009) Hippocampal gene expression changes during age-related cognitive decline.; Brain Res, 1256: 101-10 |
|
GSE13799 |
| Paxson, Julia A et al. (2011) Age-dependent decline in mouse lung regeneration with loss of lung fibroblast clonogenicity and increased myofibroblastic differentiation.; PLoS One, 6: e23232 |
|
GSE27964 |
| Payen, Didier et al. (2009) Gene-expression profiling of peripheral blood mononuclear cells in sepsis.; Crit Care Med, 37: 2323-4; author reply 2324 |
|
GSE9960 |
| Paylakhi, Seyed Hassan et al. (2013) FOXC1 in human trabecular meshwork cells is involved in regulatory pathway that includes miR-204, MEIS2, and ITG?1.; Exp Eye Res, 111: 112-21 |
|
GSE40314 |
| Payton, Jacqueline E et al. (2009) High throughput digital quantification of mRNA abundance in primary human acute myeloid leukemia samples.; J Clin Invest, 119: 1714-26 |
|
GSE12662 |
| Paz-Barba, Miriam et al. (2024) Apolipoprotein L genes are novel mediators of inflammation in beta cells.; Diabetologia, 67: 124-136 |
|
GSE218316 |
| Pazur, Kristijan et al. (2022) Hoxb1 Regulates Distinct Signaling Pathways in Neuromesodermal and Hindbrain Progenitors to Promote Cell Survival and Specification.; Stem Cells, 40: 175-189 |
|
GSE174021 |
| Pearce, Erika L et al. (2009) Enhancing CD8 T-cell memory by modulating fatty acid metabolism.; Nature, [no vol.]: [no pages] |
|
GSE15750 |
| Pearl, Jocelynn R et al. [Unknown date]Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders.; Cell Syst, 8: 122-135.e7 |
|
GSE102122 |
| Pearsall, Sarah M et al. (2023) Lineage Plasticity in SCLC Generates Non-Neuroendocrine Cells Primed for Vasculogenic Mimicry.; J Thorac Oncol, 18: 1362-1385 |
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GSE240789.2 GSE240789.1 |
| Pearson, Brandon L et al. (2016) Identification of chemicals that mimic transcriptional changes associated with autism, brain aging and neurodegeneration.; Nat Commun, 7: 11173 |
|
GSE70249 |
| Peck, Amy R et al. (2012) Low levels of Stat5a protein in breast cancer are associated with tumor progression and unfavorable clinical outcomes.; Breast Cancer Res, 14: R130 |
|
GSE37781 |
| Peddada, Sailaja et al. (2006) Inhibitors of differentiation (ID1, ID2, ID3 and ID4) genes are neuronal targets of MeCP2 that are elevated in Rett syndrome.; Hum Mol Genet, 15: 2003-14 |
|
GSE4600 |
| Pede, Valerie et al. (2013) Expression of ZAP70 in chronic lymphocytic leukaemia activates NF-?B signalling.; Br J Haematol, 163: 621-30 |
|
GSE51286 |
| Pedemonte, Enrico et al. (2007) The molecular signature of therapeutic mesenchymal stem cells exposes the architecture of the hematopoietic stem cell niche synapse.; BMC Genomics, 8: 65 |
|
GSE5011 |
| Pedersen, Malene B et al. (2007) Gene expression time course in the human skin during elicitation of allergic contact dermatitis.; J Invest Dermatol, 127: 2585-95 |
|
GSE6281 |
| Pediaditakis, Iosif et al. (2021) Modeling alpha-synuclein pathology in a human brain-chip to assess blood-brain barrier disruption.; Nat Commun, 12: 5907 |
|
GSE168870 |
| Pediaditakis, Iosif et al. (2022) A microengineered Brain-Chip to model neuroinflammation in humans.; iScience, 25: 104813 |
|
GSE199787 |
| Pedragosa, Jordi et al. (2018) CNS-border associated macrophages respond to acute ischemic stroke attracting granulocytes and promoting vascular leakage.; Acta Neuropathol Commun, 6: 76 |
|
GSE106931 |
| Pedram, Ali et al. (2013) Estrogen reduces lipid content in the liver exclusively from membrane receptor signaling.; Sci Signal, 6: ra36 |
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GSE45346 |
| Pedraza, Vincente et al. (2010) Gene expression signatures in breast cancer distinguish phenotype characteristics, histologic subtypes, and tumor invasiveness.; Cancer, 116: 486-96 |
|
GSE10810 |
| Pedro, M Pilar et al. (2023) A GPCR screening in human keratinocytes identifies that the metabolite receptor HCAR3 controls epithelial proliferation, migration, and cellular respiration.; bioRxiv, [no vol.]: [no pages] |
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GSE228631 |
| Pedroni, Silvia M A et al. (2014) Pregnancy in obese mice protects selectively against visceral adiposity and is associated with increased adipocyte estrogen signalling.; PLoS One, 9: e94680 |
|
GSE48811 |
| Pedrosa, Erika et al. (2011) Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells.; J Neurogenet, 25: 88-103 |
|
GSE26629 |
| Peek, Stacey L et al. (2022) p53-mediated neurodegeneration in the absence of the nuclear protein Akirin2.; iScience, 25: 103814 |
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GSE178844.1 GSE178844.2 |
| Peel, Michael T et al. [Unknown date]Transcriptome Analyses of Female Somatotropes and Lactotropes Reveal Novel Regulators of Cell Identity in the Pituitary.; Endocrinology, 159: 3965-3980 |
|
GSE118863 |
| Peeters, Janneke G C et al. (2015) Inhibition of Super-Enhancer Activity in Autoinflammatory Site-Derived T Cells Reduces Disease-Associated Gene Expression.; Cell Rep, 12: 1986-96 |
|
GSE71595 |
| Peffer, Melanie E et al. (2014) Caveolin-1 regulates genomic action of the glucocorticoid receptor in neural stem cells.; Mol Cell Biol, 34: 2611-23 |
|
GSE49804 |
| Pehkonen, Henna et al. (2018) Liprin-α1 modulates cancer cell signaling by transmembrane protein CD82 in adhesive membrane domains linked to cytoskeleton.; Cell Commun Signal, 16: 41 |
|
GSE108392 |
| Pei, Fei et al. (2023) Sensory nerve niche regulates mesenchymal stem cell homeostasis via FGF/mTOR/autophagy axis.; Nat Commun, 14: 344 |
|
GSE197785 |
| Pei, Huadong et al. (2009) FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt.; Cancer Cell, 16: 259-66 |
|
GSE16515 |
| Pei, Liming et al. (2011) Thyroid hormone receptor repression is linked to type I pneumocyte-associated respiratory distress syndrome.; Nat Med, 17: 1466-72 |
|
GSE30661 |
| Pei, Liming et al. (2015) Dependence of hippocampal function on ERR?-regulated mitochondrial metabolism.; Cell Metab, 21: 628-36 |
|
GSE47133 |
| Pei, Luxin et al. (2021) Plasma Metabolomics Reveals Dysregulated Metabolic Signatures in HIV-Associated Immune Reconstitution Inflammatory Syndrome.; Front Immunol, 12: 693074 |
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GSE173697.1 GSE173697.2 |
| Pei, Yanxin et al. (2012) An animal model of MYC-driven medulloblastoma.; Cancer Cell, 21: 155-67 |
|
GSE34126 |
| Pei, Yanxin et al. (2016) HDAC and PI3K Antagonists Cooperate to Inhibit Growth of MYC-Driven Medulloblastoma.; Cancer Cell, 29: 311-323 |
|
GSE69410 |
| Peinado-Serrano, Javier et al. (2022) A Six-Gene Prognostic and Predictive Radiotherapy-Based Signature for Early and Locally Advanced Stages in Non-Small-Cell Lung Cancer.; Cancers (Basel), 14: [no pages] |
|
GSE197109 |
| Peiris, Heshan et al. (2018) Discovering human diabetes-risk gene function with genetics and physiological assays.; Nat Commun, 9: 3855 |
|
GSE116369 |
| Peixoto, Lucia et al. (2015) How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets.; Nucleic Acids Res, 43: 7664-74 |
|
GSE63412 |
| Peixoto, Lucia L et al. (2015) Memory acquisition and retrieval impact different epigenetic processes that regulate gene expression.; BMC Genomics, 16 Suppl 5: S5 |
|
GSE50423 |
| Peleg, Shahaf et al. (2010) Altered histone acetylation is associated with age-dependent memory impairment in mice.; Science, 328: 753-6 |
|
GSE20270 |
| Pellagatti, A et al. (2010) Deregulated gene expression pathways in myelodysplastic syndrome hematopoietic stem cells.; Leukemia, 24: 756-64 |
|
GSE19429 |
| Pellagatti, Andrea et al. (2006) Gene expression profiles of CD34+ cells in myelodysplastic syndromes: involvement of interferon-stimulated genes and correlation to FAB subtype and karyotype.; Blood, 108: 337-45 |
|
GSE4619 |
| Pellegrini, Kathryn L et al. (2016) Application of small RNA sequencing to identify microRNAs in acute kidney injury and fibrosis.; Toxicol Appl Pharmacol, 312: 42-52 |
|
GSE61328 |