List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Ni, Chunyang et al. (2025) A programmed decline in ribosome levels governs human early neurodevelopment.; Nat Cell Biol, 27: 1240-1255 |
|
GSE247456.1 |
| Ni, Peiyan et al. (2019) iPSC-derived homogeneous populations of developing schizophrenia cortical interneurons have compromised mitochondrial function.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE125999 GSE125805 |
| Niakan, Kathy K et al. (2010) Sox17 promotes differentiation in mouse embryonic stem cells by directly regulating extraembryonic gene expression and indirectly antagonizing self-renewal.; Genes Dev, 24: 312-26 |
|
GSE19028 |
| Nicastro, Holly L et al. (2014) Preventive effects of NSAIDs, NO-NSAIDs, and NSAIDs plus difluoromethylornithine in a chemically induced urinary bladder cancer model.; Cancer Prev Res (Phila), 7: 246-54 |
|
GSE52054 |
| Nicholas, Cory R et al. (2013) Functional maturation of hPSC-derived forebrain interneurons requires an extended timeline and mimics human neural development.; Cell Stem Cell, 12: 573-86 |
|
GSE45660 |
| Nicholatos, Justin W et al. (2021) SCD Inhibition Protects from α-Synuclein-Induced Neurotoxicity But Is Toxic to Early Neuron Cultures.; eNeuro, 8: [no pages] |
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GSE172385 |
| Nichterwitz, Susanne et al. (2016) Laser capture microscopy coupled with Smart-seq2 for precise spatial transcriptomic profiling.; Nat Commun, 7: 12139 |
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GSE76514.2 GSE76514.1 |
| Nichterwitz, Susanne et al. (2020) LCM-seq reveals unique transcriptional adaptation mechanisms of resistant neurons and identifies protective pathways in spinal muscular atrophy.; Genome Res, 30: 1083-1096 |
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GSE115706 |
| Nickel, A C et al. (2021) Longitudinal stability of molecular alterations and drug response profiles in tumor spheroid cell lines enables reproducible analyses.; Biomed Pharmacother, 144: 112278 |
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GSE181274 |
| Nickeleit, Irina et al. (2008) Argyrin a reveals a critical role for the tumor suppressor protein p27(kip1) in mediating antitumor activities in response to proteasome inhibition.; Cancer Cell, 14: 23-35 |
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GSE8565 |
| Nickolls, Alec R et al. (2020) Transcriptional Programming of Human Mechanosensory Neuron Subtypes from Pluripotent Stem Cells.; Cell Rep, 30: 932-946.e7 |
|
GSE139273 |
| Nickols, Nicholas G et al. (2007) Modulating hypoxia-inducible transcription by disrupting the HIF-1-DNA interface.; ACS Chem Biol, 2: 561-71 |
|
GSE7835 |
| Nickols, Nicholas G et al. (2007) Suppression of androgen receptor-mediated gene expression by a sequence-specific DNA-binding polyamide.; Proc Natl Acad Sci U S A, 104: 10418-23 |
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GSE7708 |
| Nicodeme, Edwige et al. (2010) Suppression of inflammation by a synthetic histone mimic.; Nature, 468: 1119-23 |
|
GSE21764 |
| Nicol, Barbara et al. (2015) Gonadal Identity in the Absence of Pro-Testis Factor SOX9 and Pro-Ovary Factor Beta-Catenin in Mice.; Biol Reprod, 93: 35 |
|
GSE67463 |
| Nicol, Barbara et al. (2019) RUNX1 maintains the identity of the fetal ovary through an interplay with FOXL2.; Nat Commun, 10: 5116 |
|
GSE129038 |
| Nicola, Teodora et al. (2024) A lactobacilli-based inhaled live biotherapeutic product attenuates pulmonary neutrophilic inflammation.; Nat Commun, 15: 7113 |
|
GSE271605 |
| Nicolas, Francisco Esteban et al. (2008) Experimental identification of microRNA-140 targets by silencing and overexpressing miR-140.; RNA, 14: 2513-20 |
|
GSE13590 |
| Nicoletto, Giulia et al. (2024) G-quadruplexes in an SVA retrotransposon cause aberrant TAF1 gene expression in X-linked dystonia parkinsonism.; Nucleic Acids Res, 52: 11571-11586 |
|
GSE250293 |
| Niculescu, A B et al. (2020) Blood biomarkers for memory: toward early detection of risk for Alzheimer disease, pharmacogenomics, and repurposed drugs.; Mol Psychiatry, 25: 1651-1672 |
|
GSE127711 |
| Nie, Fayi et al. (2021) Schizophrenia risk candidate EGR3 is a novel transcriptional regulator of RELN and regulates neurite outgrowth via the Reelin signal pathway in vitro.; J Neurochem, 157: 1745-1758 |
|
GSE181076 |
| Nie, Jing et al. (2011) Differential muscle gene expression as a function of disease progression in Goto-Kakizaki diabetic rats.; Mol Cell Endocrinol, 338: 10-7 |
|
GSE13271 |
| Nie, Xiang et al. (2018) The Innate Immune Receptors TLR2/4 Mediate Repeated Social Defeat Stress-Induced Social Avoidance through Prefrontal Microglial Activation.; Neuron, 99: 464-479.e7 |
|
GSE115995 GSE115994 |
| Nie, Zuqin et al. (2012) c-Myc is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells.; Cell, 151: 68-79 |
|
GSE37222 |
| Niebuhr, Birte et al. (2013) Runx1 is essential at two stages of early murine B-cell development.; Blood, 122: 413-23 |
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GSE45424.2 GSE45424.1 |
| Niederkofler, Vera et al. (2016) Identification of Serotonergic Neuronal Modules that Affect Aggressive Behavior.; Cell Rep, 17: 1934-1949 |
|
GSE87758 |
| Niederleithner, Heide et al. (2012) Wnt1 is anti-lymphangiogenic in a melanoma mouse model.; J Invest Dermatol, 132: 2235-44 |
|
GSE26656 |
| Nielsen, Jakob V et al. (2014) Zbtb20 defines a hippocampal neuronal identity through direct repression of genes that control projection neuron development in the isocortex.; Cereb Cortex, 24: 1216-29 |
|
GSE38837 |
| Nielsen, Joseph A et al. (2006) Identification of a novel oligodendrocyte cell adhesion protein using gene expression profiling.; J Neurosci, 26: 9881-91 |
|
GSE5940 |
| Nielsen, Joseph A et al. (2009) Integrating microRNA and mRNA expression profiles of neuronal progenitors to identify regulatory networks underlying the onset of cortical neurogenesis.; BMC Neurosci, 10: 98 |
|
GSE11334 |
| Nielsen, Torsten O et al. (2002) Molecular characterisation of soft tissue tumours: a gene expression study.; Lancet, 359: 1301-7 |
|
GSE3443 |
| Niemann, Axel et al. (2014) The Gdap1 knockout mouse mechanistically links redox control to Charcot-Marie-Tooth disease.; Brain, 137: 668-82 |
|
GSE51650 |
| Niemeyer, Christy S et al. (2024) Suppression of the host antiviral response by non-infectious varicella zoster virus extracellular vesicles.; J Virol, 98: e0084824 |
|
GSE206641 |
| Niesen, Charles E et al. (2013) Transcriptomic profiling of human peritumoral neocortex tissues revealed genes possibly involved in tumor-induced epilepsy.; PLoS One, 8: e56077 |
|
GSE32534 |
| Niesner, Uwe et al. (2008) Autoregulation of Th1-mediated inflammation by twist1.; J Exp Med, 205: 1889-901 |
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GSE11533 GSE11534 |
| Nieto-Estévez, Vanesa et al. (2013) A global transcriptome analysis reveals molecular hallmarks of neural stem cell death, survival, and differentiation in response to partial FGF-2 and EGF deprivation.; PLoS One, 8: e53594 |
|
GSE37516 |
| Niewiadomska-Cimicka, Anna et al. (2017) Genome-wide Analysis of RAR? Transcriptional Targets in Mouse Striatum Links Retinoic Acid Signaling with Huntington's Disease and Other Neurodegenerative Disorders.; Mol Neurobiol, 54: 3859-3878 |
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GSE67761 |
| Niewiadomska-Cimicka, Anna et al. (2021) SCA7 Mouse Cerebellar Pathology Reveals Preferential Downregulation of Key Purkinje Cell-Identity Genes and Shared Disease Signature with SCA1 and SCA2.; J Neurosci, 41: 4910-4936 |
|
GSE138527 |
| Niewiadomska-Cimicka, Anna et al. (2022) Polyglutamine-expanded ATXN7 alters a specific epigenetic signature underlying photoreceptor identity gene expression in SCA7 mouse retinopathy.; J Biomed Sci, 29: 107 |
|
GSE181323 |
| Niewiadomska-Cimicka, Anna et al. (2024) AAV-Mediated CAG-Targeting Selectively Reduces Polyglutamine-Expanded Protein and Attenuates Disease Phenotypes in a Spinocerebellar Ataxia Mouse Model.; Int J Mol Sci, 25: [no pages] |
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GSE244970 |
| Niibe, Kunimichi et al. (2011) Purified mesenchymal stem cells are an efficient source for iPS cell induction.; PLoS One, 6: e17610 |
|
GSE23717 |
| Nijnik, Anastasia et al. (2012) The critical role of histone H2A-deubiquitinase Mysm1 in hematopoiesis and lymphocyte differentiation.; Blood, 119: 1370-9 |
|
GSE34285 |
| Nikolaeva, Svetlana et al. (2012) The circadian clock modulates renal sodium handling.; J Am Soc Nephrol, 23: 1019-26 |
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GSE27366 |
| Nikolopoulos, Dionysis et al. (2023) Microglia activation in the presence of intact blood-brain barrier and disruption of hippocampal neurogenesis via IL-6 and IL-18 mediate early diffuse neuropsychiatric lupus.; Ann Rheum Dis, 82: 646-657 |
|
GSE217939 |
| Nikolova-Krstevski, Vesna et al. (2008) Gene expression analysis of embryonic stem cells expressing VE-cadherin (CD144) during endothelial differentiation.; BMC Genomics, 9: 240 |
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GSE10210 |
| Nikrad, Julia A et al. (2024) Conditionally replicative adenovirus as a therapy for malignant peripheral nerve sheath tumors.; Mol Ther Oncol, 32: 200783 |
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GSE246610 |
| Nikulenkov, F et al. (2012) Insights into p53 transcriptional function via genome-wide chromatin occupancy and gene expression analysis.; Cell Death Differ, 19: 1992-2002 |
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GSE30183 |
| Nilsson, Avlant et al. (2022) Artificial neural networks enable genome-scale simulations of intracellular signaling.; Nat Commun, 13: 3069 |
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GSE202515 |
| Nilsson, Elisabeth C et al. (2006) Opposite transcriptional regulation in skeletal muscle of AMP-activated protein kinase gamma3 R225Q transgenic versus knock-out mice.; J Biol Chem, 281: 7244-52 |
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GSE4067 |
| Nilsson, Eric E et al. (2010) Gene bionetwork analysis of ovarian primordial follicle development.; PLoS One, 5: e11637 |
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GSE20324 |
| Nilsson, Eric et al. (2013) Gene bionetworks that regulate ovarian primordial follicle assembly.; BMC Genomics, 14: 496 |
|
GSE43464 |
| Nilsson, R Jonas A et al. (2011) Blood platelets contain tumor-derived RNA biomarkers.; Blood, 118: 3680-3 |
|
GSE31095 |
| Nimkulrat, Sutichot D et al. (2021) The Anna Karenina Model of ?-Cell Maturation in Development and Their Dedifferentiation in Type 1 and Type 2 Diabetes.; Diabetes, 70: 2058-2066 |
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GSE168743 |
| Ninfali, Chiara et al. (2023) The adaptive antioxidant response during fasting-induced muscle atrophy is oppositely regulated by ZEB1 and ZEB2.; Proc Natl Acad Sci U S A, 120: e2301120120 |
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GSE179619 |
| Ning, Fei et al. (2019) Hes1 attenuates type I IFN responses via VEGF-C and WDFY1.; J Exp Med, 216: 1396-1410 |
|
GSE111169 |
| Ning, Jian-Fang et al. (2019) Myc targeted CDK18 promotes ATR and homologous recombination to mediate PARP inhibitor resistance in glioblastoma.; Nat Commun, 10: 2910 |
|
GSE131218 |
| Ning, Rong et al. (2022) Spatial and Temporal Development of Müller Glial Cells in hiPSC-Derived Retinal Organoids Facilitates the Cell Enrichment and Transcriptome Analysis.; Front Cell Neurosci, 16: 820396 |
|
GSE188698 |
| Ninkovic, Jovica et al. (2013) The BAF complex interacts with Pax6 in adult neural progenitors to establish a neurogenic cross-regulatory transcriptional network.; Cell Stem Cell, 13: 403-18 |
|
GSE39362 |
| Ninomiya, Ayane et al. (2025) Differential effects of different time windows of postnatal perfluorooctane sulfonate exposure on cognitive development in mouse hippocampus.; J Toxicol Sci, 50: 223-233 |
|
GSE277523 |
| Ninomiya, Itaru et al. (2022) Regeneration of the cerebral cortex by direct chemical reprogramming of macrophages into neuronal cells in acute ischemic stroke.; Front Cell Neurosci, 17: 1225504 |
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GSE214644 |
| Niola, Francesco et al. (2012) Id proteins synchronize stemness and anchorage to the niche of neural stem cells.; Nat Cell Biol, 14: 477-87 |
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GSE36488 |
| Nishi, Misaki et al. (2022) Elucidation of the neurological effects of clothianidin exposure at the no-observed-adverse-effect level (NOAEL) using two-photon microscopy in vivo imaging.; J Vet Med Sci, 84: 585-592 |
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GSE193245 |
| Nishi, Yuichi et al. (2015) A direct fate exclusion mechanism by Sonic hedgehog-regulated transcriptional repressors.; Development, 142: 3286-93 |
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GSE65457 |
| Nishida, Yuichiro et al. (2008) Identification and classification of genes regulated by phosphatidylinositol 3-kinase- and TRKB-mediated signalling pathways during neuronal differentiation in two subtypes of the human neuroblastoma cell line SH-SY5Y.; BMC Res Notes, 1: 95 |
|
GSE9169 |
| Nishie, Tomomi et al. (2025) Effects of Bisphenol A and Retinoic Acid Exposure on Neuron and Brain Formation: A Study in Human Induced Pluripotent Stem Cells and Zebrafish Embryos.; Environ Health Perspect, 133: 67012 |
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GSE263569 |
| Nishikura, Noriko et al. (2020) Postweaning Iron Deficiency in Male Rats Leads to Long-Term Hyperactivity and Decreased Reelin Gene Expression in the Nucleus Accumbens.; J Nutr, 150: 212-221 |
|
GSE132094 |
| Nishimura, Erina Sugita et al. (2025) DNA damage in proximal tubules triggers systemic metabolic dysfunction through epigenetically altered macrophages.; Nat Commun, 16: 3958 |
|
GSE285052 |
| Nishimura, Haruki et al. (2022) Endogenous oxytocin exerts anti-nociceptive and anti-inflammatory effects in rats.; Commun Biol, 5: 907 |
|
GSE210528 |
| Nishimura, Kaneyasu et al. (2015) Identification of Neurexophilin 3 as a Novel Supportive Factor for Survival of Induced Pluripotent Stem Cell-Derived Dopaminergic Progenitors.; Stem Cells Transl Med, 4: 932-44 |
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GSE60080 |
| Nishimura, Kaneyasu et al. (2016) Estradiol Facilitates Functional Integration of iPSC-Derived Dopaminergic Neurons into Striatal Neuronal Circuits via Activation of Integrin ?5?1.; Stem Cell Reports, 6: 511-524 |
|
GSE77274 |
| Nishimura, Yuhei et al. (2007) Genome-wide expression profiling of lymphoblastoid cell lines distinguishes different forms of autism and reveals shared pathways.; Hum Mol Genet, 16: 1682-98 |
|
GSE7329 |
| Nishino, Koichiro et al. (2011) DNA methylation dynamics in human induced pluripotent stem cells over time.; PLoS Genet, 7: e1002085 |
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GSE20750 |
| Nishiyama, Akira et al. (2009) Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors.; Cell Stem Cell, 5: 420-33 |
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GSE16148 GSE14559 |
| Nishiyama, Akira et al. (2013) Systematic repression of transcription factors reveals limited patterns of gene expression changes in ES cells.; Sci Rep, 3: 1390 |
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GSE26520 |
| Nishiyama, Takahiko et al. (2022) Precise genomic editing of pathogenic mutations inRBM20rescues dilated cardiomyopathy.; Sci Transl Med, 14: eade1633 |
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GSE210783.1 GSE210783.2 |
| Nishizawa, Haruki et al. (2011) Comparative gene expression profiling of placentas from patients with severe pre-eclampsia and unexplained fetal growth restriction.; Reprod Biol Endocrinol, 9: 107 |
|
GSE24129 |
| Niskanen, Jonna et al. (2025) Uptake of alpha-synuclein preformed fibrils is suppressed by inflammation and induces an aberrant phenotype in human microglia.; Glia, 73: 159-174 |
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GSE277636 |
| Nissim, Oriel et al. (2012) Liver regeneration signature in hepatitis B virus (HBV)-associated acute liver failure identified by gene expression profiling.; PLoS One, 7: e49611 |
|
GSE38941 |
| Nissou, Marie-France et al. (2013) Hypoxia-induced expression of VE-cadherin and filamin B in glioma cell cultures and pseudopalisade structures.; J Neurooncol, 113: 239-49 |
|
GSE32100 |
| Nissou, Marie-France et al. (2013) The transcriptomic response of mixed neuron-glial cell cultures to 1,25-dihydroxyvitamin d3 includes genes limiting the progression of neurodegenerative diseases.; J Alzheimers Dis, [no vol.]: [no pages] |
|
GSE41184 |
| Nitahara, Kenta et al. (2024) Chromatin remodeler CHD8 is required for spermatogonial proliferation and early meiotic progression.; Nucleic Acids Res, 52: 2995-3010 |
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GSE252121 |
| Nitarska, Justyna et al. (2016) A Functional Switch of NuRD Chromatin Remodeling Complex Subunits Regulates Mouse Cortical Development.; Cell Rep, 17: 1683-1698 |
|
GSE70298 |
| Nitschke, Larissa et al. (2021) Modulation of ATXN1 S776 phosphorylation reveals the importance of allele-specific targeting in SCA1.; JCI Insight, 6: [no pages] |
|
GSE163885 |
| Niu, Chunxiao et al. (2022) Identification of hematopoietic stem cells residing in the meninges of adult mice at steady state.; Cell Rep, 41: 111592 |
|
GSE201403 |
| Niu, Hongshen et al. (2024) LKB1 prevents ILC2 exhaustion to enhance antitumor immunity.; Cell Rep, 43: 113579 |
|
GSE209588 |
| Niu, Kongyan et al. (2023) ONE-seq: epitranscriptome and gene-specific profiling of NAD-capped RNA.; Nucleic Acids Res, 51: e12 |
|
GSE194271 |
| Niu, Xubo et al. (2024) A conserved transcription factor regulatory program promotes tendon fate.; Dev Cell, [no vol.]: [no pages] |
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GSE252165 |
| Niwa, Yasutaka et al. (2018) Muscarinic Acetylcholine Receptors Chrm1 and Chrm3 Are Essential for REM Sleep.; Cell Rep, 24: 2231-2247.e7 |
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GSE107500 |
| Nixon, Belinda J et al. (2012) Chronic exposure to acrylamide induces DNA damage in male germ cells of mice.; Toxicol Sci, 129: 135-45 |
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GSE47574 |
| Nizinska, Karolina et al. (2024) The role of Methyl-CpG binding domain 3 (Mbd3) protein in epileptogenesis.; PLoS One, 20: e0324580 |
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GSE227084 |
| Nizzardo, M et al. (2020) Synaptotagmin 13 is neuroprotective across motor neuron diseases.; Acta Neuropathol, 139: 837-853 |
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GSE115130 GSE93939 |
| Noack, Florian et al. (2022) Multimodal profiling of the transcriptional regulatory landscape of the developing mouse cortex identifies Neurog2 as a key epigenome remodeler.; Nat Neurosci, 25: 154-167 |
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GSE155677.2 |