List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Onishi, Akishi et al. (2010) The orphan nuclear hormone receptor ERRbeta controls rod photoreceptor survival.; Proc Natl Acad Sci U S A, 107: 11579-84 |
|
GSE21944 |
| Onishi, Iichiroh et al. (2025) SRRM4 Knockout Helps the Human Mesenchymal Stem Cell Line to Penetrate Decellularized Cancellous Bone.; Bioengineering (Basel), 12: [no pages] |
|
GSE302358 |
| Onishi, Motoyasu et al. (2015) Hydroxypropyl-?-cyclodextrin spikes local inflammation that induces Th2 cell and T follicular helper cell responses to the coadministered antigen.; J Immunol, 194: 2673-82 |
|
GSE63332 |
| Onken, Michael D et al. (2014) A surprising cross-species conservation in the genomic landscape of mouse and human oral cancer identifies a transcriptional signature predicting metastatic disease.; Clin Cancer Res, 20: 2873-84 |
|
GSE50041 |
| Ono, Katsuhiko et al. (2014) Development of the prethalamus is crucial for thalamocortical projection formation and is regulated by Olig2.; Development, 141: 2075-84 |
|
GSE56389 |
| Ono, Masahiro et al. (2007) Foxp3 controls regulatory T-cell function by interacting with AML1/Runx1.; Nature, 446: 685-9 |
|
GSE6939 |
| Ono, Takashi et al. (2025) PNPLA6 regulates retinal homeostasis by choline through phospholipid turnover.; Nat Commun, 16: 2221 |
|
GSE253526 |
| Ono, Yoshinao et al. (2024) Characterization of IL-6R-expressing monocytes in the lung of patients with chronic obstructive pulmonary disease.; Respir Investig, 62: 856-866 |
|
GSE265853 GSE265855 |
| Onoda, Atsuto et al. (2018) Dysregulation of major functional genes in frontal cortex by maternal exposure to carbon black nanoparticle is not ameliorated by ascorbic acid pretreatment.; Sci Total Environ, 634: 1126-1135 |
|
GSE250286 |
| Onodera, Kazunari et al. (2020) Unveiling synapse pathology in spinal bulbar muscular atrophy by genome-wide transcriptome analysis of purified motor neurons derived from disease specific iPSCs.; Mol Brain, 13: 18 |
|
GSE142612 |
| Onyimba, Jennifer A et al. (2011) The innate immune response to coxsackievirus B3 predicts progression to cardiovascular disease and heart failure in male mice.; Biol Sex Differ, 2: 2 |
|
GSE26630 |
| Ooi, Aik T et al. (2014) Molecular profiling of premalignant lesions in lung squamous cell carcinomas identifies mechanisms involved in stepwise carcinogenesis.; Cancer Prev Res (Phila), 7: 487-95 |
|
GSE49155 |
| Ooi, Chia Huey et al. (2009) Oncogenic pathway combinations predict clinical prognosis in gastric cancer.; PLoS Genet, 5: e1000676 |
|
GSE22183 GSE15456 GSE15459 GSE15455 |
| Opsomer, Rémi et al. (2020) Amyloid Precursor Protein (APP) Controls the Expression of the Transcriptional Activator Neuronal PAS Domain Protein 4 (NPAS4) and Synaptic GABA Release.; eNeuro, 7: [no pages] |
|
GSE112847 |
| Orchel, Joanna et al. (2012) Expression patterns of kinin-dependent genes in endometrial cancer.; Int J Gynecol Cancer, 22: 937-44 |
|
GSE36389 |
| Ordoñes Sanchez, Evelyn et al. (2021) Early life adversity promotes resilience to opioid addiction-related phenotypes in male rats and sex-specific transcriptional changes.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE160495 |
| Ori, Alessandro et al. (2015) Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats.; Cell Syst, 1: 224-37 |
|
GSE66715 |
| Ori, Anil P S et al. (2019) A Longitudinal Model of Human Neuronal Differentiation for Functional Investigation of Schizophrenia Polygenic Risk.; Biol Psychiatry, 85: 544-553 |
|
GSE92845 |
| Oria, Victor O et al. (2022) Coupled fibromodulin and SOX2 signaling as a critical regulator of metastatic outgrowth in melanoma.; Cell Mol Life Sci, 79: 377 |
|
GSE183180 |
| Oricchio, Elisa et al. (2014) Frequent disruption of the RB pathway in indolent follicular lymphoma suggests a new combination therapy.; J Exp Med, 211: 1379-91 |
|
GSE37088 |
| Orihuel, Javier et al. (2021) Δ 9-tetrahydrocannabinol during adolescence reprograms the nucleus accumbens transcriptome affecting reward processing, impulsivity, and specific aspects of cocaine addiction-like behavior in a sex-dependent manner.; Int J Neuropsychopharmacol, [no vol.]: [no pages] |
|
GSE158188 |
| Orlic-Milacic, Marija et al. (2014) Over-expression of either MECP2_e1 or MECP2_e2 in neuronally differentiated cells results in different patterns of gene expression.; PLoS One, 9: e91742 |
|
GSE54258 |
| Orlowska, Karina et al. (2025) Loss of Dioxin Response Element-Mediated Induction of PKM2 Reprograms Hepatic Metabolism in Response to TCDD.; Int J Mol Sci, 26: [no pages] |
|
GSE309637 |
| Ormel, Paul R et al. (2018) Microglia innately develop within cerebral organoids.; Nat Commun, 9: 4167 |
|
GSE102335 |
| Orniacki, Clarisse et al. (2023) Y-complex nucleoporins independently contribute to nuclear pore assembly and gene regulation in neuronal progenitors.; J Cell Sci, 136: [no pages] |
|
GSE218080 |
| Oron, Oded et al. (2019) Gene network analysis reveals a role for striatal glutamatergic receptors in dysregulated risk-assessment behavior of autism mouse models.; Transl Psychiatry, 9: 257 |
|
GSE138539 |
| Orozco-Solis, Ricardo et al. (2015) SIRT1 Relays Nutritional Inputs to the Circadian Clock Through the Sf1 Neurons of the Ventromedial Hypothalamus.; Endocrinology, 156: 2174-84 |
|
GSE99564 |
| Orozco-Solis, Ricardo et al. (2017) A Circadian Genomic Signature Common to Ketamine and Sleep Deprivation in the Anterior Cingulate Cortex.; Biol Psychiatry, 82: 351-360 |
|
GSE93041 |
| Oroń, Magdalena et al. (2022) The molecular network of the proteasome machinery inhibition response is orchestrated by HSP70, revealing vulnerabilities in cancer cells.; Cell Rep, 40: 111428 |
|
GSE184029 |
| Orr-Asman, Melissa A et al. (2017) mTOR Kinase Inhibition Effectively Decreases Progression of a Subset of Neuroendocrine Tumors that Progress on Rapalog Therapy and Delays Cardiac Impairment.; Mol Cancer Ther, 16: 2432-2441 |
|
GSE102246 |
| Orre, Marie et al. (2014) Isolation of glia from Alzheimer's mice reveals inflammation and dysfunction.; Neurobiol Aging, 35: 2746-60 |
|
GSE74615 |
| Orsmark-Pietras, Christina et al. (2013) Transcriptome analysis reveals upregulation of bitter taste receptors in severe asthmatics.; Eur Respir J, 42: 65-78 |
|
GSE27011 |
| Ortabozkoyun, Havva et al. (2022) CRISPR and biochemical screens identify MAZ as a cofactor in CTCF-mediated insulation at Hox clusters.; Nat Genet, 54: 202-212 |
|
GSE157137 GSE157138 |
| Ortabozkoyun, Havva et al. (2024) Members of an array of zinc-finger proteins specify distinct Hox chromatin boundaries.; Mol Cell, 84: 3406-3422.e6 |
|
GSE230478 GSE230477 |
| Orth, Martin F et al. (2022) Systematic multi-omics cell line profiling uncovers principles of Ewing sarcoma fusion oncogene-mediated gene regulation.; Cell Rep, 41: 111761 |
|
GSE212063 |
| Ortiz-Romero, Paula et al. (2021) Co-Treatment With Verapamil and Curcumin Attenuates the Behavioral Alterations Observed in Williams-Beuren Syndrome Mice by Regulation of MAPK Pathway and Microglia Overexpression.; Front Pharmacol, 12: 670785 |
|
GSE162092 |
| Ortiz-Vitali, Jose L et al. (2023) Disease modeling and gene correction of LGMDR21 iPSCs elucidates the role of POGLUT1 in skeletal muscle maintenance, regeneration, and the satellite cell niche.; Mol Ther Nucleic Acids, 33: 683-697 |
|
GSE225148 |
| Ortiz-Álvarez, Gonzalo et al. (2022) p53/p21 pathway activation contributes to the ependymal fate decision downstream of GemC1.; Cell Rep, 41: 111810 |
|
GSE184397 |
| Osaki, Tatsuya et al. (2026) miR126-mediated alteration of vascular integrity in Rett syndrome.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE314031 |
| Osborne, Olivia M et al. (2024) Post-stroke hippocampal neurogenesis is impaired by microvascular dysfunction and PI3K signaling in cerebral amyloid angiopathy.; Cell Rep, 43: 114848 |
|
GSE266033.2 |
| Osborne, R J et al. (2007) Expression profile of FSHD supports a link between retinal vasculopathy and muscular dystrophy.; Neurology, 68: 569-77 |
|
GSE10760 |
| Osenberg, Sivan et al. (2018) Activity-dependent aberrations in gene expression and alternative splicing in a mouse model of Rett syndrome.; Proc Natl Acad Sci U S A, 115: E5363-E5372 |
|
GSE113477 |
| Osetrova, Maria et al. (2024) Lipidome atlas of the adult human brain.; Nat Commun, 15: 4455 |
|
GSE262948 |
| Oshida, Keiyu et al. (2015) Screening a mouse liver gene expression compendium identifies modulators of the aryl hydrocarbon receptor (AhR).; Toxicology, 336: 99-112 |
|
GSE55084 GSE55756 |
| Oshigiri, Tsutomu et al. (2019) Intravenous Infusion of Mesenchymal Stem Cells Alters Motor Cortex Gene Expression in a Rat Model of Acute Spinal Cord Injury.; J Neurotrauma, 36: 411-420 |
|
GSE108168 |
| Oshikawa, Mio et al. (2013) Cortical excitatory neurons become protected from cell division during neurogenesis in an Rb family-dependent manner.; Development, 140: 2310-20 |
|
GSE37577 |
| Oshima, Eri et al. (2023) M2 macrophage-derived cathepsin S promotes peripheral nerve regeneration via fibroblast-Schwann cell-signaling relay.; J Neuroinflammation, 20: 258 |
|
GSE232487 |
| Osipovitch, Mikhail et al. (2019) Human ESC-Derived Chimeric Mouse Models of Huntington's Disease Reveal Cell-Intrinsic Defects in Glial Progenitor Cell Differentiation.; Cell Stem Cell, 24: 107-122.e7 |
|
GSE105041 |
| Oskvig, Devon B et al. (2012) Maternal immune activation by LPS selectively alters specific gene expression profiles of interneuron migration and oxidative stress in the fetus without triggering a fetal immune response.; Brain Behav Immun, 26: 623-34 |
|
GSE34058 |
| Osma-Garcia, Ines C et al. (2023) The RNA binding proteins TIA1 and TIAL1 promote Mcl1 mRNA translation to protect germinal center responses from apoptosis.; Cell Mol Immunol, 20: 1063-1076 |
|
GSE235358 |
| Osman, Aya et al. (2023) Acetate supplementation rescues social deficits and alters transcriptional regulation in prefrontal cortex of Shank3 deficient mice.; Brain Behav Immun, 114: 311-324 |
|
GSE225983 |
| Osman, Aya et al. (2023) Dietary polyphenols drive dose-dependent behavioral and molecular alterations to repeated morphine.; Sci Rep, 13: 12223 |
|
GSE224937 |
| Osman, Hadley C et al. (2024) Impact of maternal immune activation and sex on placental and fetal brain cytokine and gene expression profiles in a preclinical model of neurodevelopmental disorders.; J Neuroinflammation, 21: 118 |
|
GSE248222 |
| Osmond-McLeod, Megan J et al. (2013) Surface coatings of ZnO nanoparticles mitigate differentially a host of transcriptional, protein and signalling responses in primary human olfactory cells.; Part Fibre Toxicol, 10: 54 |
|
GSE45322 |
| Osmond-McLeod, Megan J et al. (2014) Dermal absorption and short-term biological impact in hairless mice from sunscreens containing zinc oxide nano- or larger particles.; Nanotoxicology, 8 Suppl 1: 72-84 |
|
GSE46568 |
| Osmond-McLeod, Megan J et al. (2016) Long-term exposure to commercially available sunscreens containing nanoparticles of TiO2 and ZnO revealed no biological impact in a hairless mouse model.; Part Fibre Toxicol, 13: 44 |
|
GSE84818 |
| Ost, Mario et al. (2016) Muscle mitochondrial stress adaptation operates independently of endogenous FGF21 action.; Mol Metab, 5: 79-90 |
|
GSE71749 |
| Ostapcuk, Veronika et al. (2018) Activity-dependent neuroprotective protein recruits HP1 and CHD4 to control lineage-specifying genes.; Nature, 557: 739-743 |
|
GSE97945 |
| Osterndorff-Kahanek, Elizabeth A et al. (2015) Chronic ethanol exposure produces time- and brain region-dependent changes in gene coexpression networks.; PLoS One, 10: e0121522 |
|
GSE60676 |
| Osterndorff-Kahanek, Elizabeth et al. (2013) Gene expression in brain and liver produced by three different regimens of alcohol consumption in mice: comparison with immune activation.; PLoS One, 8: e59870 |
|
GSE42789 |
| Ostrem, Bridget Elaine LaMonica et al. (2024) Fetal brain response to maternal inflammation requires microglia.; Development, 151: [no pages] |
|
GSE225430 |
| Ostroff, Linnaea E et al. (2019) Axon TRAP reveals learning-associated alterations in cortical axonal mRNAs in the lateral amgydala.; Elife, 8: [no pages] |
|
GSE124592 |
| Ostrowski, Jerzy et al. (2007) Molecular defense mechanisms of Barrett's metaplasia estimated by an integrative genomics.; J Mol Med (Berl), 85: 733-43 |
|
GSE36223 |
| Ostrowski, Jerzy et al. (2009) Functional features of gene expression profiles differentiating gastrointestinal stromal tumours according to KIT mutations and expression.; BMC Cancer, 9: 413 |
|
GSE17743 |
| Ostuni, Renato et al. (2013) Latent enhancers activated by stimulation in differentiated cells.; Cell, 152: 157-71 |
|
GSE38371 |
| Osório, Catarina et al. (2026) Purkinje cell intrinsic activity shapes cerebellar development and function.; Nat Commun, 17: [no pages] |
|
GSE294208 |
| Ota, Hidetaka et al. (2025) The Cholinergic Receptor Nicotinic α3 Was Reduced in the Hippocampus of Early Cognitively Impaired Adult Male Mice and Upregulated by Nicotine and Cytisine in HT22 Cells.; Cells, 14: [no pages] |
|
GSE272324 |
| Otake, Kentaro et al. (2019) Identification of biomarkers for amyotrophic lateral sclerosis by comprehensive analysis of exosomal mRNAs in human cerebrospinal fluid.; BMC Med Genomics, 12: 7 |
|
GSE121519 |
| Otero, Ashley M et al. (2024) Influenza A virus during pregnancy disrupts maternal intestinal immunity and fetal cortical development in a dose- and time-dependent manner.; Mol Psychiatry, 30: 13-28 |
|
GSE262291 |
| Otero, Brittney A et al. (2021) Transcriptome alterations in myotonic dystrophy frontal cortex.; Cell Rep, 34: 108634 |
|
GSE157428 |
| Oti, Martin et al. (2015) Genome-wide p63-regulated gene expression in differentiating epidermal keratinocytes.; Genom Data, 5: 159-63 |
|
GSE59827 |
| Otsubo, Chihiro et al. (2014) TSPAN2 is involved in cell invasion and motility during lung cancer progression.; Cell Rep, 7: 527-538 |
|
GSE47436 |
| Otsuki, Yuji et al. (2020) Vasodilator oxyfedrine inhibits aldehyde metabolism and thereby sensitizes cancer cells to xCT-targeted therapy.; Cancer Sci, 111: 127-136 |
|
GSE137952 |
| Ott, Christopher J et al. (2018) Enhancer Architecture and Essential Core Regulatory Circuitry of Chronic Lymphocytic Leukemia.; Cancer Cell, 34: 982-995.e7 |
|
GSE119744 |
| Ottaviani, Daniela et al. (2026) Targeting CDK12 disrupts estrogen-receptor chromatin recruitment and ER-MED1 transcription in advanced ER+ breast cancer.; J Natl Cancer Inst, 118: 404-421 |
|
GSE309900 |
| Ottenhoff, Tom H M et al. (2012) Genome-wide expression profiling identifies type 1 interferon response pathways in active tuberculosis.; PLoS One, 7: e45839 |
|
GSE56153 |
| Otto-Duessel, Maya et al. (2011) Tissue-selective regulation of androgen-responsive genes.; Endocr Res, 37: 203-15 |
|
GSE29170 |
| Ottoboni, Linda et al. (2012) An RNA profile identifies two subsets of multiple sclerosis patients differing in disease activity.; Sci Transl Med, 4: 153ra131 |
|
GSE16214 |
| Otu, Hasan H et al. (2007) Restoration of liver mass after injury requires proliferative and not embryonic transcriptional patterns.; J Biol Chem, 282: 11197-204 |
|
GSE6998 |
| Ou, Jingxing et al. (2018) iPSCs from a Hibernator Provide a Platform for Studying Cold Adaptation and Its Potential Medical Applications.; Cell, 173: 851-863.e16 |
|
GSE93935 |
| Ou, Qian et al. (2021) TcpC inhibits neutrophil extracellular trap formation by enhancing ubiquitination mediated degradation of peptidylarginine deiminase 4.; Nat Commun, 12: 3481 |
|
GSE173807 |
| Ou, Shuo-Ming et al. (2025) Vasopressin-Dependent β-Catenin Phosphorylation at Ser552 and Branching Structure of Mouse Collecting Duct System.; bioRxiv, [no vol.]: [no pages] |
|
GSE291074 |
| Ou, Yichao et al. (2022) Adult neurogenesis of the median eminence contributes to structural reconstruction and recovery of body fluid metabolism in hypothalamic self-repair after pituitary stalk lesion.; Cell Mol Life Sci, 79: 458 |
|
GSE167904 GSE187602 |
| Ou, Zixuan et al. (2024) Biodegradable Janus sonozyme with continuous reactive oxygen species regulation for treating infected critical-sized bone defects.; Nat Commun, 15: 10525 |
|
GSE279154 |
| Ouandaogo, Zamalou Gisèle et al. (2011) Human cumulus cells molecular signature in relation to oocyte nuclear maturity stage.; PLoS One, 6: e27179 |
|
GSE31681 |
| Ouchi, Rie et al. (2016) Senescence from glioma stem cell differentiation promotes tumor growth.; Biochem Biophys Res Commun, 470: 275-81 |
|
GSE74304 |
| Oudes, Asa J et al. (2006) Transcriptomes of human prostate cells.; BMC Genomics, 7: 92 |
|
GSE3998 |
| Oue, Hiroshi et al. (2023) LRP1 in vascular mural cells modulates cerebrovascular integrity and function in the presence of APOE4.; JCI Insight, 8: [no pages] |
|
GSE225065 |
| Ouellet, Véronique et al. (2005) Discrimination between serous low malignant potential and invasive epithelial ovarian tumors using molecular profiling.; Oncogene, 24: 4672-87 |
|
GSE6822 |
| Örd, Tiit et al. (2023) Dissecting the polygenic basis of atherosclerosis via disease-associated cell state signatures.; Am J Hum Genet, 110: 722-740 |
|
GSE205931.3 GSE205931.2 GSE205931.4 |