List of all 20,292 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Progatzky, Fränze et al. (2021) Regulation of intestinal immunity and tissue repair by enteric glia.; Nature, 599: 125-130 |
|
GSE182708 |
| Prohens, Llucia et al. (2025) Association of astrocyte-specific gene expression in the dorsolateral prefrontal cortex with clozapine treatment in schizophrenia.; Transl Psychiatry, 15: 458 |
|
GSE244782 |
| Pronk, Cornelis J H et al. (2007) Elucidation of the phenotypic, functional, and molecular topography of a myeloerythroid progenitor cell hierarchy.; Cell Stem Cell, 1: 428-42 |
|
GSE8407 |
| Prost, Gaëlle et al. (2016) The putative tumor suppressor gene EphA7 is a novel BMI-1 target.; Oncotarget, 7: 58203-58217 |
|
GSE70451 |
| Prots, Iryna et al. (2011) Analysis of the transcriptional program of developing induced regulatory T cells.; PLoS One, 6: e16913 |
|
GSE24634 |
| Protzmann, Jil et al. (2025) PDGFRα inhibition reduces myofibroblast expansion in the fibrotic rim and enhances recovery after ischemic stroke.; J Clin Invest, 135: [no pages] |
|
GSE137534 |
| Proud, David et al. (2008) Gene expression profiles during in vivo human rhinovirus infection: insights into the host response.; Am J Respir Crit Care Med, 178: 962-8 |
|
GSE11348 |
| Provenzano, Giovanni et al. (2016) Comparative Gene Expression Analysis of Two Mouse Models of Autism: Transcriptome Profiling of the BTBR and En2 (-/-) Hippocampus.; Front Neurosci, 10: 396 |
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GSE81501 GSE81502 |
| Provençal, Nadine et al. (2020) Glucocorticoid exposure during hippocampal neurogenesis primes future stress response by inducing changes in DNA methylation.; Proc Natl Acad Sci U S A, 117: 23280-23285 |
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GSE119842 |
| Prudencio, Mercedes et al. (2015) Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS.; Nat Neurosci, 18: 1175-82 |
|
GSE67196 |
| Prueitt, Robyn L et al. (2016) An Immune-Inflammation Gene Expression Signature in Prostate Tumors of Smokers.; Cancer Res, 76: 1055-1065 |
|
GSE68135 GSE68136 |
| Pruis, M G M et al. (2014) Maternal western diet primes non-alcoholic fatty liver disease in adult mouse offspring.; Acta Physiol (Oxf), 210: 215-27 |
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GSE44901 |
| Prukop, Thomas et al. (2014) Progesterone antagonist therapy in a Pelizaeus-Merzbacher mouse model.; Am J Hum Genet, 94: 533-46 |
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GSE55315 |
| Prusty, Archana Bairavasundaram et al. (2024) RNA helicase IGHMBP2 regulates THO complex to ensure cellular mRNA homeostasis.; Cell Rep, 43: 113802 |
|
GSE237412 |
| Pruunsild, Priit et al. (2023) Expression of the primate-specific LINC00473 RNA in mouse neurons promotes excitability and CREB-regulated transcription.; J Biol Chem, 299: 104671 |
|
GSE201643 |
| Pruvost, Mathilde et al. (2023) The stability of the myelinating oligodendrocyte transcriptome is regulated by the nuclear lamina.; Cell Rep, 42: 112848 |
|
GSE222574 |
| Przybycien-Szymanska, Magdalena M et al. (2014) Parental binge alcohol abuse alters F1 generation hypothalamic gene expression in the absence of direct fetal alcohol exposure.; PLoS One, 9: e89320 |
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GSE53028 |
| Ptasinska, A et al. (2012) Depletion of RUNX1/ETO in t(8;21) AML cells leads to genome-wide changes in chromatin structure and transcription factor binding.; Leukemia, 26: 1829-41 |
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GSE34594 GSE29223 |
| Ptasinska, Anetta et al. (2014) Identification of a dynamic core transcriptional network in t(8;21) AML that regulates differentiation block and self-renewal.; Cell Rep, 8: 1974-1988 |
|
GSE54478 |
| Pucheu-Haston, Cherie M et al. (2010) Biomarkers of acute respiratory allergen exposure: screening for sensitization potential.; Toxicol Appl Pharmacol, 244: 144-55 |
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GSE18707 |
| Puhakka, Noora et al. (2017) Chronically dysregulated NOTCH1 interactome in the dentate gyrus after traumatic brain injury.; PLoS One, 12: e0172521 |
|
GSE86579 |
| Puhakka, Noora et al. (2022) Transfer RNA-Derived Fragments and isomiRs Are Novel Components of Chronic TBI-Induced Neuropathology.; Biomedicines, 10: [no pages] |
|
GSE192979 |
| Puighermanal, Emma et al. (2017) Ribosomal Protein S6 Phosphorylation Is Involved in Novelty-Induced Locomotion, Synaptic Plasticity and mRNA Translation.; Front Mol Neurosci, 10: 419 |
|
GSE98029 |
| Puissant, Alexandre et al. (2013) Targeting MYCN in neuroblastoma by BET bromodomain inhibition.; Cancer Discov, 3: 308-23 |
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GSE43392 |
| Puissant, Alexandre et al. (2014) SYK is a critical regulator of FLT3 in acute myeloid leukemia.; Cancer Cell, 25: 226-42 |
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GSE54065 |
| Pujadas, Elisabet et al. (2021) Molecular Profiling of Coronavirus Disease 2019 (COVID-19) Autopsies Uncovers Novel Disease Mechanisms.; Am J Pathol, [no vol.]: [no pages] |
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GSE182297 |
| Pulice, John L et al. (2025) Amplified dosage of the NKX2-1 lineage transcription factor controls its oncogenic role in lung adenocarcinoma.; Mol Cell, 85: 1311-1329.e16 |
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GSE229541 |
| Pulido, Robert S et al. (2020) Neuronal Activity Regulates Blood-Brain Barrier Efflux Transport through Endothelial Circadian Genes.; Neuron, 108: 937-952.e7 |
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GSE156689.1 GSE156689.2 |
| Pulido-Salgado, Marta et al. (2017) Myeloid C/EBP? deficiency reshapes microglial gene expression and is protective in experimental autoimmune encephalomyelitis.; J Neuroinflammation, 14: 54 |
|
GSE90046 |
| Pulver-Kaste, Renee A et al. (2006) Ca2+ source-dependent transcription of CRE-containing genes in vascular smooth muscle.; Am J Physiol Heart Circ Physiol, 291: H97-105 |
|
GSE2883 |
| Pun, Renju et al. (2025) BubR1 Insufficiency Drives Transcriptomic Alterations and Pathology Associated With Cardiac Aging and Heart Failure.; Aging Cell, 24: e70160 |
|
GSE277997 |
| Punapart, Marite et al. (2014) Effect of chronic valproic Acid treatment on hepatic gene expression profile in wfs1 knockout mouse.; PPAR Res, 2014: 349525 |
|
GSE55143 |
| Pundhir, Sachin et al. (2018) Enhancer and Transcription Factor Dynamics during Myeloid Differentiation Reveal an Early Differentiation Block in Cebpa null Progenitors.; Cell Rep, 23: 2744-2757 |
|
GSE89767 |
| Punt, A Mattijs et al. (2022) Molecular and behavioral consequences of Ube3a gene overdosage in mice.; JCI Insight, 7: [no pages] |
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GSE205128 |
| Punyawatthananukool, Siwakorn et al. (2024) Prostaglandin E2-EP2/EP4 signaling induces immunosuppression in human cancer by impairing bioenergetics and ribosome biogenesis in immune cells.; Nat Commun, 15: 9464 |
|
GSE242271 |
| Punzi, Simona et al. (2019) WDR5 inhibition halts metastasis dissemination by repressing the mesenchymal phenotype of breast cancer cells.; Breast Cancer Res, 21: 123 |
|
GSE113288 |
| Purcell, Maggie et al. (2014) Gene expression profiling of replicative and induced senescence.; Cell Cycle, 13: 3927-37 |
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GSE60340 |
| Puri, Deepika et al. (2021) Foxd3 controls heterochromatin-mediated repression of repeat elements and 2-cell state transcription.; EMBO Rep, 22: e53180 |
|
GSE173602 |
| Purnama, Agung et al. (2013) Gene expression profile of mouse fibroblasts exposed to a biodegradable iron alloy for stents.; Acta Biomater, 9: 8746-53 |
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GSE22794 |
| Purohit, Kush et al. (2018) Pharmacogenetic Manipulation of the Nucleus Accumbens Alters Binge-Like Alcohol Drinking in Mice.; Alcohol Clin Exp Res, 42: 879-888 |
|
GSE133115 |
| Purushotham, Aparna et al. (2009) Hepatocyte-specific deletion of SIRT1 alters fatty acid metabolism and results in hepatic steatosis and inflammation.; Cell Metab, 9: 327-38 |
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GSE14921 |
| Purzner, James et al. (2024) Ezh2 Delays Activation of Differentiation Genes During Normal Cerebellar Granule Neuron Development and in Medulloblastoma.; bioRxiv, [no vol.]: [no pages] |
|
GSE279346 |
| Putaala, H et al. (2010) Analysis of the human intestinal epithelial cell transcriptional response to Lactobacillus acidophilus, Lactobacillus salivarius, Bifidobacterium lactis and Escherichia coli.; Benef Microbes, 1: 283-95 |
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GSE15636 |
| Putman, A H et al. (2016) Identification of quantitative trait loci and candidate genes for an anxiolytic-like response to ethanol in BXD recombinant inbred strains.; Genes Brain Behav, 15: 367-81 |
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GSE28515 |
| Putoczki, Tracy L et al. (2013) Interleukin-11 is the dominant IL-6 family cytokine during gastrointestinal tumorigenesis and can be targeted therapeutically.; Cancer Cell, 24: 257-71 |
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GSE43800 |
| Putzbach, William et al. (2017) Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism.; Elife, 6: [no pages] |
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GSE101234 |
| Pybus, Alyssa F et al. (2024) Profiling the neuroimmune cascade in 3xTg-AD mice exposed to successive mild traumatic brain injuries.; J Neuroinflammation, 21: 156 |
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GSE226838 |
| Pyeon, Dohun et al. (2007) Fundamental differences in cell cycle deregulation in human papillomavirus-positive and human papillomavirus-negative head/neck and cervical cancers.; Cancer Res, 67: 4605-19 |
|
GSE6791 |
| Pyonteck, Stephanie M et al. (2013) CSF-1R inhibition alters macrophage polarization and blocks glioma progression.; Nat Med, [no vol.]: [no pages] |
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GSE37475 |
| Qabrati, Xhem et al. (2023) Transgene-free direct conversion of murine fibroblasts into functional muscle stem cells.; NPJ Regen Med, 8: 43 |
|
GSE208059 |
| Qi, Hank H et al. (2010) Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development.; Nature, 466: 503-7 |
|
GSE21555 |
| Qi, Jianfei et al. (2010) Siah2-dependent concerted activity of HIF and FoxA2 regulates formation of neuroendocrine phenotype and neuroendocrine prostate tumors.; Cancer Cell, 18: 23-38 |
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GSE18478 |
| Qi, Linlin et al. (2023) VEGFR-3 signaling restrains the neuron-macrophage crosstalk during neurotropic viral infection.; Cell Rep, 42: 112489 |
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GSE228931 |
| Qi, Ruoyao et al. (2024) Therapeutic vaccine-induced plasma cell differentiation is defective in the presence of persistently high HBsAg levels.; J Hepatol, 80: 714-729 |
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GSE230861 |
| Qi, Wei et al. (2012) Selective inhibition of Ezh2 by a small molecule inhibitor blocks tumor cells proliferation.; Proc Natl Acad Sci U S A, 109: 21360-5 |
|
GSE41315 |
| Qi, Wenqing et al. (2022) Genomic profiling identifies genes and pathways dysregulated by HEY1-NCOA2 fusion and shines a light on mesenchymal chondrosarcoma tumorigenesis.; J Pathol, 257: 579-592 |
|
GSE196002 |
| Qi, Xiaopeng et al. (2013) Antagonistic regulation by the transcription factors C/EBP? and MITF specifies basophil and mast cell fates.; Immunity, 39: 97-110 |
|
GSE41596 |
| Qi, Yue et al. (2022) Endothelial c-Myc knockout enhances diet-induced liver inflammation and fibrosis.; FASEB J, 36: e22077 |
|
GSE176573 |
| Qian, Feng et al. (2013) Identification of genes critical for resistance to infection by West Nile virus using RNA-Seq analysis.; Viruses, 5: 1664-81 |
|
GSE40718 |
| Qian, Feng et al. (2013) Impaired toll-like receptor 3-mediated immune responses from macrophages of patients chronically infected with hepatitis C virus.; Clin Vaccine Immunol, 20: 146-55 |
|
GSE40812 |
| Qian, Feng et al. (2014) Immune markers associated with host susceptibility to infection with West Nile virus.; Viral Immunol, 27: 39-47 |
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GSE43190 |
| Qian, Hao et al. (2020) Reversing a model of Parkinson's disease with in situ converted nigral neurons.; Nature, 582: 550-556 |
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GSE142250 |
| Qian, Jiawen et al. (2018) TLR2 Promotes Glioma Immune Evasion by Downregulating MHC Class II Molecules in Microglia.; Cancer Immunol Res, 6: 1220-1233 |
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GSE109297 |
| Qian, Jing et al. (2018) Transcriptomic Study Reveals Recovery of Impaired Astrocytes Contribute to Neuroprotective Effects of Danhong Injection Against Cerebral Ischemia/Reperfusion-Induced Injury.; Front Pharmacol, 9: 250 |
|
GSE106680 |
| Qian, Jun et al. (2005) Gene expression profiling of the bone marrow mononuclear cells from patients with myelodysplastic syndrome.; Oncol Rep, 14: 1189-97 |
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GSE16236 |
| Qian, Junming et al. (2023) Multiplex epigenome editing ofMECP2to rescue Rett syndrome neurons.; Sci Transl Med, 15: eadd4666 |
|
GSE214548 |
| Qian, Kaiqiang et al. (2022) Manganese enhances macrophage defense against Mycobacterium tuberculosis via the STING-TNF signaling pathway.; Int Immunopharmacol, 113: 109471 |
|
GSE211666 |
| Qian, Liangyue et al. (2019) Suppression of ILC2 differentiation from committed T cell precursors by E protein transcription factors.; J Exp Med, 216: 884-899 |
|
GSE111518 |
| Qian, Mollie F et al. (2023) HNF1α maintains pancreatic α and β cell functions in primary human islets.; JCI Insight, 8: [no pages] |
|
GSE246229 |
| Qian, Qingwen et al. (2024) Obesity disrupts the pituitary-hepatic UPR communication leading to NAFLD progression.; Cell Metab, 36: 1550-1565.e9 |
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GSE263187 GSE263188 |
| Qian, Sheng Hu et al. (2022) Evolution and function of developmentally dynamic pseudogenes in mammals.; Genome Biol, 23: 235 |
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GSE176018 |
| Qian, Tongcheng et al. (2017) Directed differentiation of human pluripotent stem cells to blood-brain barrier endothelial cells.; Sci Adv, 3: e1701679 |
|
GSE97575 |
| Qian, Xuemin et al. (2015) RNA-sequencing studies identify genes differentially regulated during inflammation-driven lung tumorigenesis and targeted by chemopreventive agents.; Inflamm Res, 64: 343-61 |
|
GSE64027 |
| Qian, Xuyu et al. (2016) Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure.; Cell, 165: 1238-54 |
|
GSE80073 |
| Qian, Yuan et al. (2021) ZEB1 promotes pathogenic Th1 and Th17 cell differentiation in multiple sclerosis.; Cell Rep, 36: 109602 |
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GSE179832.2 GSE179832.1 |
| Qiang, Lihua et al. (2023) A mycobacterial effector promotes ferroptosis-dependent pathogenicity and dissemination.; Nat Commun, 14: 1430 |
|
GSE199069 |
| Qiao, Dan et al. (2025) Implications of prenatal exposure to hyperandrogen for hippocampal neurodevelopment and autism-like behavior in offspring.; Prog Neuropsychopharmacol Biol Psychiatry, 136: 111219 |
|
GSE246534 |
| Qiao, Sen et al. (2023) Intra-pituitary follicle-stimulating hormone signaling regulates hepatic lipid metabolism in mice.; Nat Commun, 14: 1098 |
|
GSE216096 |
| Qiao, Wenhui et al. (2023) Trem2 H157Y increases soluble TREM2 production and reduces amyloid pathology.; Mol Neurodegener, 18: 8 |
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GSE212618 |
| Qiao, Yunbo et al. (2015) Dual roles of histone H3 lysine 9 acetylation in human embryonic stem cell pluripotency and neural differentiation.; J Biol Chem, 290: 2508-20 |
|
GSE66779 |
| Qin, Dongdong et al. (2023) Phase-separated CCER1 coordinates the histone-to-protamine transition and male fertility.; Nat Commun, 14: 8209 |
|
GSE212733.2 |
| Qin, Han et al. (2012) Transcriptional analysis of pluripotency reveals the Hippo pathway as a barrier to reprogramming.; Hum Mol Genet, 21: 2054-67 |
|
GSE35416 |
| Qin, Jinzhong et al. (2012) The polycomb group protein L3mbtl2 assembles an atypical PRC1-family complex that is essential in pluripotent stem cells and early development.; Cell Stem Cell, 11: 319-32 |
|
GSE38801 |
| Qin, Jun et al. (2013) COUP-TFII inhibits TGF-?-induced growth barrier to promote prostate tumorigenesis.; Nature, 493: 236-40 |
|
GSE33182 |
| Qin, Lin et al. (2021) DNMT3L promotes neural differentiation by enhancing STAT1 and STAT3 phosphorylation independent of DNA methylation.; Prog Neurobiol, 201: 102028 |
|
GSE157080 |
| Qin, Luye et al. (2018) Social deficits in Shank3-deficient mouse models of autism are rescued by histone deacetylase (HDAC) inhibition.; Nat Neurosci, 21: 564-575 |
|
GSE109328 |
| Qin, Luye et al. (2021) Deficiency of autism risk factor ASH1L in prefrontal cortex induces epigenetic aberrations and seizures.; Nat Commun, 12: 6589 |
|
GSE181819 |
| Qin, Qizhi et al. (2023) CNTNAP4 signaling regulates osteosarcoma disease progression.; NPJ Precis Oncol, 7: 2 |
|
GSE210373 |
| Qin, Shangyao et al. (2022) Topoisomerase IIA in adult NSCs regulates SVZ neurogenesis by transcriptional activation of Usp37.; Nucleic Acids Res, [no vol.]: [no pages] |
|
GSE192398 |
| Qin, Tingting et al. (2022) ATRX loss in glioma results in dysregulation of cell-cycle phase transition and ATM inhibitor radio-sensitization.; Cell Rep, 38: 110216 |
|
GSE178113 |
| Qin, Weiping et al. (2013) The central nervous system (CNS)-independent anti-bone-resorptive activity of muscle contraction and the underlying molecular and cellular signatures.; J Biol Chem, 288: 13511-21 |
|
GSE30301 |
| Qin, Yan et al. (2018) A Milieu Molecule for TGF-β Required for Microglia Function in the Nervous System.; Cell, 174: 156-171.e16 |
|
GSE112604.1 |
| Qin, Yufeng et al. (2018) An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression.; Genome Biol, 19: 7 |
|
GSE99327 |
| Qin, Zixi et al. (2023) ActivatedKRASreprograms neural progenitor cells to glioma stem cell‑like phenotype.; Int J Oncol, 63: [no pages] |
|
GSE228903 |