List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Ouellette, Julie et al. (2020) Vascular contributions to 16p11.2 deletion autism syndrome modeled in mice.; Nat Neurosci, 23: 1090-1101 |
|
GSE147790 |
| Ouillette, Peter et al. (2008) Integrated genomic profiling of chronic lymphocytic leukemia identifies subtypes of deletion 13q14.; Cancer Res, 68: 1012-21 |
|
GSE9250 |
| Ouseph, Madhu M et al. (2012) Atypical E2F repressors and activators coordinate placental development.; Dev Cell, 22: 849-62 |
|
GSE30488 |
| Ouwenga, Rebecca et al. (2017) Transcriptomic Analysis of Ribosome-Bound mRNA in Cortical Neurites In Vivo.; J Neurosci, [no vol.]: [no pages] |
|
GSE74506 |
| Ouwenga, Rebecca et al. (2018) The Differences in Local Translatome across Distinct Neuron Types Is Mediated by Both Baseline Cellular Differences and Post-transcriptional Mechanisms.; eNeuro, 5: [no pages] |
|
GSE121162 |
| Ouyang, Hong et al. (2014) WNT7A and PAX6 define corneal epithelium homeostasis and pathogenesis.; Nature, 511: 358-61 |
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GSE54322 |
| Ouyang, Pei et al. (2024) SELENOK-dependent CD36 palmitoylation regulates microglial functions and Aβ phagocytosis.; Redox Biol, 70: 103064 |
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GSE255034 |
| Ouyang, Weiming et al. (2012) Novel Foxo1-dependent transcriptional programs control T(reg) cell function.; Nature, 491: 554-9 |
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GSE40655 |
| Ouyang, Xuesong et al. (2008) Activator protein-1 transcription factors are associated with progression and recurrence of prostate cancer.; Cancer Res, 68: 2132-44 |
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GSE11836 |
| Ouzikov, Stephanie et al. (2024) LRIG1 controls proliferation of adult neural stem cells by facilitating TGFβ and BMP signalling pathways.; Commun Biol, 7: 845 |
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GSE263575 |
| Ovadia, Shai et al. (2023) SWI/SNF complexes are required for retinal pigmented epithelium differentiation and for the inhibition of cell proliferation and neural differentiation programs.; Development, 150: [no pages] |
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GSE210414 |
| Ovando, Bladimir J et al. (2006) Hepatic gene downregulation following acute and subchronic exposure to 2,3,7,8-tetrachlorodibenzo-p-dioxin.; Toxicol Sci, 94: 428-38 |
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GSE5789 |
| Ovchinnikov, Dmitry A et al. (2018) The Impact of APP on Alzheimer-like Pathogenesis and Gene Expression in Down Syndrome iPSC-Derived Neurons.; Stem Cell Reports, 11: 32-42 |
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GSE100680 |
| Overall, Rupert W et al. (2009) Genetics of the hippocampal transcriptome in mouse: a systematic survey and online neurogenomics resource.; Front Neurosci, 3: 55 |
|
GSE84767 |
| Overbey, Eliah G et al. (2019) Spaceflight influences gene expression, photoreceptor integrity, and oxidative stress-related damage in the murine retina.; Sci Rep, 9: 13304 |
|
GSE131954 |
| Overman, Michael J et al. (2013) Gene expression profiling of ampullary carcinomas classifies ampullary carcinomas into biliary-like and intestinal-like subtypes that are prognostic of outcome.; PLoS One, 8: e65144 |
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GSE39409 |
| Ovesen, Jerald L et al. (2014) Long-term exposure to low-concentrations of Cr(VI) induce DNA damage and disrupt the transcriptional response to benzo[a]pyrene.; Toxicology, 316: 14-24 |
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GSE49571 |
| Owen, Leah A et al. (2023) Placental Inflammation Significantly Correlates with Reduced Risk for Retinopathy of Prematurity.; Am J Pathol, 193: 1776-1788 |
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GSE218039 |
| Owen, Liusaidh J et al. (2023) Characterization of an eye field-like state during optic vesicle organoid development.; Development, 150: [no pages] |
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GSE213272 |
| Owens, Gabe E et al. (2002) Ovulatory surges of human CG prevent hormone-induced granulosa cell tumor formation leading to the identification of tumor-associated changes in the transcriptome.; Mol Endocrinol, 16: 1230-42 |
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GSE499 |
| Owens, Jake L et al. (2022) Targeting Protein Arginine Methyltransferase 5 Suppresses Radiation-induced Neuroendocrine Differentiation and Sensitizes Prostate Cancer Cells to Radiation.; Mol Cancer Ther, 21: 448-459 |
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GSE163109 |
| Owens, Rosie et al. (2017) Divergent Neuroinflammatory Regulation of Microglial TREM Expression and Involvement of NF-?B.; Front Cell Neurosci, 11: 56 |
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GSE76737 |
| Owlett, Laura D et al. (2022) Gas6 induces inflammation and reduces plaque burden but worsens behavior in a sex-dependent manner in the APP/PS1 model of Alzheimer's disease.; J Neuroinflammation, 19: 38 |
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GSE171195 |
| Oyelakin, Akinsola et al. (2023) An integrated genomic approach identifies follistatin as a target of the p63-epidermal growth factor receptor oncogenic network in head and neck squamous cell carcinoma.; NAR Cancer, 5: zcad038 |
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GSE212752 |
| Oyesanya, Regina A et al. (2014) MDA-9/Syntenin regulates differentiation and angiogenesis programs in head and neck squamous cell carcinoma.; Oncoscience, 1: 725-737 |
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GSE57760 |
| Oyola, Mario G et al. (2019) Sleep Deprivation Alters the Pituitary Stress Transcriptome in Male and Female Mice.; Front Endocrinol (Lausanne), 10: 676 |
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GSE133334 |
| Ozaki, N et al. (2010) Identification of genes involved in gentamicin-induced nephrotoxicity in rats--a toxicogenomic investigation.; Exp Toxicol Pathol, 62: 555-66 |
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GSE50804 |
| Ozaki, Yuta et al. (2023) Myonectin protects against skeletal muscle dysfunction in male mice through activation of AMPK/PGC1α pathway.; Nat Commun, 14: 4675 |
|
GSE233328 |
| Ozawa, Hiroki et al. (2024) MUC1-C Dependence for the Progression of Pancreatic Neuroendocrine Tumors Identifies a Druggable Target for the Treatment of This Rare Cancer.; Biomedicines, 12: [no pages] |
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GSE267722 |
| Ozil, Jean-Pierre et al. (2006) Ca2+ oscillatory pattern in fertilized mouse eggs affects gene expression and development to term.; Dev Biol, 300: 534-44 |
|
GSE11687 |
| Ozturk, Ferhat et al. (2013) Systematic analysis of palatal transcriptome to identify cleft palate genes within TGF?3-knockout mice alleles: RNA-Seq analysis of TGF?3 Mice.; BMC Genomics, 14: 113 |
|
GSE45568 |
| Ozyerli-Goknar, Ezgi et al. (2023) Epigenetic-focused CRISPR/Cas9 screen identifies (absent, small, or homeotic)2-like protein (ASH2L) as a regulator of glioblastoma cell survival.; Cell Commun Signal, 21: 328 |
|
GSE201657 |
| Pa?ca, Anca M et al. (2015) Functional cortical neurons and astrocytes from human pluripotent stem cells in 3D culture.; Nat Methods, 12: 671-8 |
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GSE68917 |
| Pa?ca, Sergiu P et al. (2011) Using iPSC-derived neurons to uncover cellular phenotypes associated with Timothy syndrome.; Nat Med, 17: 1657-62 |
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GSE25542 |
| Paakinaho, Ville et al. (2014) SUMOylation regulates the chromatin occupancy and anti-proliferative gene programs of glucocorticoid receptor.; Nucleic Acids Res, 42: 1575-92 |
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GSE48328 GSE48330 |
| Pabona, John Mark P et al. (2012) Krüppel-like factor 9 and progesterone receptor coregulation of decidualizing endometrial stromal cells: implications for the pathogenesis of endometriosis.; J Clin Endocrinol Metab, 97: E376-92 |
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GSE31683 |
| Pabst, Caroline et al. (2016) GPR56 identifies primary human acute myeloid leukemia cells with high repopulating potential in vivo.; Blood, 127: 2018-27 |
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GSE48843 |
| Pace, Marta et al. (2020) Loss of Snord116 impacts lateral hypothalamus, sleep, and food-related behaviors.; JCI Insight, 5: [no pages] |
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GSE139524 |
| Pacheco, Natasha L et al. (2017) RNA sequencing and proteomics approaches reveal novel deficits in the cortex ofMecp2-deficient mice, a model for Rett syndrome.; Mol Autism, 8: 56 |
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GSE96684 |
| Pacheco, Sara E et al. (2012) Sperm mRNA transcripts are indicators of sub-chronic low dose testicular injury in the Fischer 344 rat.; PLoS One, 7: e44280 |
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GSE34641 |
| Pacheco-Pinedo, Eugenia C et al. (2009) Transcriptional and functional differences in stem cell populations isolated from extraocular and limb muscles.; Physiol Genomics, [no vol.]: [no pages] |
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GSE9294 |
| Pacheco-Rodriguez, Gustavo et al. (2009) Chemokine-enhanced chemotaxis of lymphangioleiomyomatosis cells with mutations in the tumor suppressor TSC2 gene.; J Immunol, 182: 1270-7 |
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GSE12027 |
| Pachiappan, Arjunan et al. (2009) ETS2 regulating neurodegenerative signaling pathway of human neuronal (SH-SY5Y) cells exposed to single and repeated low-dose sarin (GB).; Chem Res Toxicol, 22: 990-6 |
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GSE2732 |
| Pachimatla, Akhil Goud et al. (2025) Glucagon-like peptide-1 receptor agonism improves lung cancer outcomes and tumor growth control.; JCI Insight, 10: [no pages] |
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GSE302656 |
| Pacifico, R et al. (2017) Transcriptome sequencing implicates dorsal striatum-specific gene network, immune response and energy metabolism pathways in bipolar disorder.; Mol Psychiatry, 22: 441-449 |
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GSE80336 |
| Padamsey, Zahid et al. (2024) Sex-specific resilience of neocortex to food restriction.; Elife, 12: [no pages] |
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GSE233435 |
| Padberg, Florian et al. (2021) Novel indirect co-culture of immortalised hepatocytes with monocyte derived macrophages is characterised by pro-inflammatory cytokine networks.; Toxicol In Vitro, 73: 105134 |
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GSE156627 |
| Padget, Rachel L et al. (2024) Acute Adenoviral Infection Elicits an Arrhythmogenic Substrate Prior to Myocarditis.; Circ Res, 134: 892-912 |
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GSE246572 |
| Padiadpu, Jyothi et al. (2023) Multi-omic network analysis identified betacellulin as a novel target of omega-3 fatty acid attenuation of western diet-induced nonalcoholic steatohepatitis.; EMBO Mol Med, 15: e18367 |
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GSE215225 |
| Padmanabhan Nair, Vidya et al. (2021) Activation of HERV-K(HML-2) disrupts cortical patterning and neuronal differentiation by increasing NTRK3.; Cell Stem Cell, 28: 1566-1581.e8 |
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GSE171101 |
| Padovan-Merhar, Olivia et al. (2015) Single mammalian cells compensate for differences in cellular volume and DNA copy number through independent global transcriptional mechanisms.; Mol Cell, 58: 339-52 |
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GSE66053 |
| Padovani, Michela et al. (2009) Distinct effects of calorie restriction and exercise on mammary gland gene expression in C57BL/6 mice.; Cancer Prev Res (Phila), 2: 1076-87 |
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GSE14202 |
| Padula, Stephanie L et al. (2019) High-throughput transcriptome analysis reveals that the loss of Pten activates a novel NKX6-1/RASGRP1 regulatory module to rescue microphthalmia caused by Fgfr2-deficient lenses.; Hum Genet, 138: 1391-1407 |
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GSE132945 |
| Paeger, Lars et al. (2017) Antagonistic modulation of NPY/AgRP and POMC neurons in the arcuate nucleus by noradrenalin.; Elife, 6: [no pages] |
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GSE106188 |
| Paesler, Katharina et al. (2015) Limited effects of an eIF2αS51A allele on neurological impairments in the 5xFAD mouse model of Alzheimer's disease.; Neural Plast, 2015: 825157 |
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GSE50521 |
| Page, Nicolas et al. (2018) Expression of the DNA-Binding Factor TOX Promotes the Encephalitogenic Potential of Microbe-Induced Autoreactive CD8+T Cells.; Immunity, 48: 937-950.e8 |
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GSE93804 |
| Page, Nicolas et al. (2021) Persistence of self-reactive CD8+ T cells in the CNS requires TOX-dependent chromatin remodeling.; Nat Commun, 12: 1009 |
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GSE149550 |
| Page, Todd J et al. (2006) Genome-wide analysis of human HSF1 signaling reveals a transcriptional program linked to cellular adaptation and survival.; Mol Biosyst, 2: 627-39 |
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GSE3697 |
| Pagella, Pierfrancesco et al. (2024) An unexpected role of neurite outgrowth inhibitor A as regulator of tooth enamel formation.; Int J Oral Sci, 16: 60 |
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GSE283391 |
| Pagliaroli, Luca et al. (2021) Inability to switch from ARID1A-BAF to ARID1B-BAF impairs exit from pluripotency and commitment towards neural crest formation in ARID1B-related neurodevelopmental disorders.; Nat Commun, 12: 6469 |
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GSE169654 |
| Pahl, Matthew C et al. (2015) Transcriptional (ChIP-Chip) Analysis of ELF1, ETS2, RUNX1 and STAT5 in Human Abdominal Aortic Aneurysm.; Int J Mol Sci, 16: 11229-58 |
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GSE7084 |
| Pai, Athma A et al. (2012) The contribution of RNA decay quantitative trait loci to inter-individual variation in steady-state gene expression levels.; PLoS Genet, 8: e1003000 |
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GSE37451 |
| Pai, Balagopal et al. (2022) High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy.; Acta Neuropathol Commun, 10: 149 |
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GSE140393.2 |
| Pai, Shraddha et al. (2019) Differential methylation of enhancer at IGF2 is associated with abnormal dopamine synthesis in major psychosis.; Nat Commun, 10: 2046 |
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GSE120423 GSE112523 |
| Paiboonrungruang, Chorlada et al. (2023) Small molecule screen identifies pyrimethamine as an inhibitor of NRF2-driven esophageal hyperplasia.; Redox Biol, 67: 102901 |
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GSE235587 GSE235584 |
| Paik, Elizabeth J et al. (2018) Using intracellular markers to identify a novel set of surface markers for live cell purification from a heterogeneous hIPSC culture.; Sci Rep, 8: 804 |
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GSE99139 |
| Paik, Ji-hye et al. (2009) FoxOs cooperatively regulate diverse pathways governing neural stem cell homeostasis.; Cell Stem Cell, 5: 540-53 |
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GSE18308 |
| Painter, Meghan M et al. (2015) Antiviral Protection via RdRP-Mediated Stable Activation of Innate Immunity.; PLoS Pathog, 11: e1005311 |
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GSE62756 |
| Painter, Michio W et al. (2014) Diminished Schwann cell repair responses underlie age-associated impaired axonal regeneration.; Neuron, 83: 331-343 |
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GSE59040 GSE58982 |
| Paiva, Bruno et al. (2016) Phenotypic and genomic analysis of multiple myeloma minimal residual disease tumor cells: a new model to understand chemoresistance.; Blood, 127: 1896-906 |
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GSE70398 |
| Paiva, Isabel et al. (2017) Sodium butyrate rescues dopaminergic cells from alpha-synuclein-induced transcriptional deregulation and DNA damage.; Hum Mol Genet, 26: 2231-2246 |
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GSE89115 |
| Paiva, Isabel et al. (2022) Caffeine intake exerts dual genome-wide effects on hippocampal metabolism and learning-dependent transcription.; J Clin Invest, 132: [no pages] |
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GSE167121 |
| Pajarillo, Edward et al. (2023) Astrocytic Yin Yang 1 is critical for murine brain development and protection against apoptosis, oxidative stress, and inflammation.; Glia, 71: 450-466 |
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GSE207014 |
| Pajtler, Kristian W et al. (2013) The KDM1A histone demethylase is a promising new target for the epigenetic therapy of medulloblastoma.; Acta Neuropathol Commun, 1: 19 |
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GSE43552 |
| Pajtler, Kristian W et al. (2017) The GSK461364 PLK1 inhibitor exhibits strong antitumoral activity in preclinical neuroblastoma models.; Oncotarget, 8: 6730-6741 |
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GSE67102 |
| Pajukanta, Päivi et al. (2004) Familial combined hyperlipidemia is associated with upstream transcription factor 1 (USF1).; Nat Genet, 36: 371-6 |
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GSE590 |
| Pakkasjärvi, Niklas et al. (2005) Indicative oligodendrocyte dysfunction in spinal cords of human fetuses suffering from a lethal motoneuron disease.; J Neurobiol, 65: 269-81 |
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GSE1481 |
| Pakula, Anna et al. (2013) Altered expression of cyclin A 1 in muscle of patients with facioscapulohumeral muscle dystrophy (FSHD-1).; PLoS One, 8: e73573 |
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GSE44874 |
| Pal, Anasuya et al. (2023) Multidimensional quantitative phenotypic and molecular analysis reveals neomorphic behaviors of p53 missense mutants.; NPJ Breast Cancer, 9: 78 |
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GSE162341 |
| Pal, Sharmistha et al. (2011) Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development.; Genome Res, 21: 1260-72 |
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GSE23525 |
| Pal, Suranjana et al. (2021) An Early Cortical Progenitor-Specific Mechanism Regulates Thalamocortical Innervation.; J Neurosci, 41: 6822-6835 |
|
GSE159006 |
| Pala, Francesca et al. (2018) Distinct metabolic states govern skeletal muscle stem cell fates during prenatal and postnatal myogenesis.; J Cell Sci, 131: [no pages] |
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GSE116586 |
| Paladini, Maria Serena et al. (2025) Fate mapping of peripherally-derived macrophages after traumatic brain injury in mice reveals a long-lasting population with a distinct transcriptomic signature.; Nat Commun, 16: 8898 |
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GSE283556 GSE283558 |
| Palagani, Ajay et al. (2014) Ectopic microRNA-150-5p transcription sensitizes glucocorticoid therapy response in MM1S multiple myeloma cells but fails to overcome hormone therapy resistance in MM1R cells.; PLoS One, 9: e113842 |
|
GSE59805 |
| Palanisamy, Arvind et al. (2020) In utero exposure to transient ischemia-hypoxemia promotes long-term neurodevelopmental abnormalities in male rat offspring.; JCI Insight, 5: [no pages] |
|
GSE146155 |
| Palau, Nuria et al. (2013) Genome-wide transcriptional analysis of T cell activation reveals differential gene expression associated with psoriasis.; BMC Genomics, 14: 825 |
|
GSE47598 |
| Palazon, Asis et al. (2017) An HIF-1α/VEGF-A Axis in Cytotoxic T Cells Regulates Tumor Progression.; Cancer Cell, 32: 669-683.e5 |
|
GSE54323 |
| Palazzo, Alberta et al. (2022) Transformed cells after senescence give rise to more severe tumor phenotypes than transformed non-senescent cells.; Cancer Lett, 546: 215850 |
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GSE210060 |
| Palazzo, E et al. (2016) The homeoprotein DLX3 and tumor suppressor p53 co-regulate cell cycle progression and squamous tumor growth.; Oncogene, 35: 3114-24 |
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GSE67713 |
| Palenzuela, Lluis et al. (2016) Gene expression profiling of brain cortex microvessels may support brain vasodilation in acute liver failure rat models.; Metab Brain Dis, 31: 1405-1417 |
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GSE79906 |
| Pääkkönen, Virve et al. (2007) Effects of TGF-beta 1 on interleukin profile of human dental pulp and odontoblasts.; Cytokine, 40: 44-51 |
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GSE8730.2 GSE8730.1 |
| Özcelik, Dennis (2020) Treatment of Neuroblastoma Cells with Inhibitors of Protein Disulfide Isomerase Upregulates NQO1 Activity.; Chem Res Toxicol, 33: 2099-2107 |
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GSE153259 |
| Özeş, Ali R et al. (2018) Protein kinase A-mediated phosphorylation regulates STAT3 activation and oncogenic EZH2 activity.; Oncogene, 37: 3589-3600 |
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GSE108418 |
| Özsoy, ?ükran et al. (2021) Cannibalized erythroblasts accelerate developmental neurogenesis by regulating mitochondrial dynamics.; Cell Rep, 35: 108942 |
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GSE167515 |