List of all 20,298 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Qin, Tingting et al. (2022) ATRX loss in glioma results in dysregulation of cell-cycle phase transition and ATM inhibitor radio-sensitization.; Cell Rep, 38: 110216 |
|
GSE178113 |
| Qin, Weiping et al. (2013) The central nervous system (CNS)-independent anti-bone-resorptive activity of muscle contraction and the underlying molecular and cellular signatures.; J Biol Chem, 288: 13511-21 |
|
GSE30301 |
| Qin, Yan et al. (2018) A Milieu Molecule for TGF-β Required for Microglia Function in the Nervous System.; Cell, 174: 156-171.e16 |
|
GSE112604.1 |
| Qin, Yufeng et al. (2018) An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression.; Genome Biol, 19: 7 |
|
GSE99327 |
| Qin, Zixi et al. (2023) ActivatedKRASreprograms neural progenitor cells to glioma stem cell‑like phenotype.; Int J Oncol, 63: [no pages] |
|
GSE228903 |
| Qiu, J et al. (2016) Decreased Npas4 and Arc mRNA Levels in the Hippocampus of Aged Memory-Impaired Wild-Type But Not Memory Preserved 11?-HSD1 Deficient Mice.; J Neuroendocrinol, 28: [no pages] |
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GSE68515 |
| Qiu, Jing et al. (2011) Transcriptomic analysis of the osmotic and reproductive remodeling of the female rat supraoptic nucleus.; Endocrinology, 152: 3483-91 |
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GSE30733 |
| Qiu, Na et al. (2023) CD8 T cell-mediated depletion of HBV surface-antigen-expressing, bilineal-differentiated liver carcinoma cells generates highly aggressive escape variants.; Oncoimmunology, 12: 2215096 |
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GSE215059 |
| Qiu, Qiang et al. (2021) Acquisition of innate odor preference depends on spontaneous and experiential activities during critical period.; Elife, 10: [no pages] |
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GSE166457.2 GSE166457.1 |
| Qiu, Weimin et al. (2010) Tumor necrosis factor receptor superfamily member 19 (TNFRSF19) regulates differentiation fate of human mesenchymal (stromal) stem cells through canonical Wnt signaling and C/EBP.; J Biol Chem, 285: 14438-49 |
|
GSE16186 |
| Qiu, Xiaoming et al. (2024) PLGA/BK microspheres targeting the bradykinin signaling pathway as a therapeutic strategy to delay intervertebral disc degeneration.; Commun Biol, 7: 1540 |
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GSE277600 |
| Qiu, Xintao et al. (2022) MYC drives aggressive prostate cancer by disrupting transcriptional pause release at androgen receptor targets.; Nat Commun, 13: 2559 |
|
GSE163143 |
| Qiu, Yiguo et al. (2023) Definition of the contribution of an Osteopontin-producing CD11c+microglial subset to Alzheimer's disease.; Proc Natl Acad Sci U S A, 120: e2218915120 |
|
GSE191118 |
| Qiu, Yijian et al. (2024) The unique catalytic properties of PSAT1 mediate metabolic adaptation to glutamine blockade.; Nat Metab, 6: 1529-1548 |
|
GSE263696 |
| Qiu, Yunguang et al. (2024) Systematic characterization of multi-omics landscape between gut microbial metabolites and GPCRome in Alzheimer's disease.; Cell Rep, 43: 114128 |
|
GSE295280 |
| Qiu, Zhixin et al. (2016) Hepatocellular carcinoma cell lines retain the genomic and transcriptomic landscapes of primary human cancers.; Sci Rep, 6: 27411 |
|
GSE78236 |
| Qiu, Zhixin et al. (2019) A Pharmacogenomic Landscape in Human Liver Cancers.; Cancer Cell, 36: 179-193.e11 |
|
GSE97098 |
| Qu, Fangfei et al. (2023) Crosstalk between small-cell lung cancer cells and astrocytes mimics brain development to promote brain metastasis.; Nat Cell Biol, 25: 1506-1519 |
|
GSE178738 GSE178732 GSE179032 GSE178736 |
| Qu, Juan et al. (2013) The Time Course of Gene Expression during Reactive Gliosis in the Optic Nerve.; PLoS One, 8: e67094 |
|
GSE40857 |
| Qu, Su et al. (2013) Rapid gene expression changes in peripheral blood lymphocytes upon practice of a comprehensive yoga program.; PLoS One, 8: e61910 |
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GSE44777 |
| Qu, Wenhui et al. (2023) Deletion of Small GTPase H-Ras Rescues Memory Deficits and Reduces Amyloid Plaque-Associated Dendritic Spine Loss in Transgenic Alzheimer's Mice.; Mol Neurobiol, 60: 495-511 |
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GSE180103 |
| Qu, Wenhui et al. (2024) Xenografted human iPSC-derived neurons with the familial Alzheimer's disease APPV717Imutation reveal dysregulated transcriptome signatures linked to synaptic function and implicate LINGO2 as a disease signaling mediator.; Acta Neuropathol, 147: 107 |
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GSE231639 |
| Qu, Wenrui et al. (2020) CPEB3 regulates neuron-specific alternative splicing and involves neurogenesis gene expression.; Aging (Albany NY), 13: 2330-2347 |
|
GSE153166 |
| Qu, Wenzheng et al. (2022) m6A Modification Involves in Enriched Environment-Induced Neurogenesis and Cognition Enhancement.; Front Cell Dev Biol, 10: 903179 |
|
GSE197754 |
| Qu, Xiaolin et al. (2021) The Alteration of M6A-Tagged Transcript Profiles in the Retina of Rats After Traumatic Optic Neuropathy.; Front Genet, 12: 628841 |
|
GSE165520 |
| Qu, Xuan et al. (2025) Charting the regulatory landscape of TP53 on transposable elements in cancer.; Genome Res, 35: 1456-1471 |
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GSE262053.1 GSE262053.2 |
| Qu, Yinghua et al. (2023) FEZ1 participates in human embryonic brain development by modulating neuronal progenitor subpopulation specification and migrations.; iScience, 26: 108497 |
|
GSE218845 |
| Qu, Yinyin et al. (2020) lncRNAs Are Involved in Sevoflurane Anesthesia-Related Brain Function Modulation through Affecting Mitochondrial Function and Aging Process.; Biomed Res Int, 2020: 8841511 |
|
GSE139220 |
| Qu, Zepeng et al. (2015) Transplantation of rat embryonic stem cell-derived retinal progenitor cells preserves the retinal structure and function in rat retinal degeneration.; Stem Cell Res Ther, 6: 219 |
|
GSE67213 |
| Qu, Zepeng et al. (2023) Stage-specific dynamic reorganization of genome topology shapes transcriptional neighborhoods in developing human retinal organoids.; Cell Rep, 42: 113543 |
|
GSE229682 |
| Quach, David H et al. (2013) A sympathetic neuron autonomous role for Egr3-mediated gene regulation in dendrite morphogenesis and target tissue innervation.; J Neurosci, 33: 4570-83 |
|
GSE41290 |
| Quagliarini, Fabiana et al. (2019) Cistromic Reprogramming of the Diurnal Glucocorticoid Hormone Response by High-Fat Diet.; Mol Cell, 76: 531-545.e5 |
|
GSE108688 |
| Qualls, Joseph E et al. (2010) Arginine usage in mycobacteria-infected macrophages depends on autocrine-paracrine cytokine signaling.; Sci Signal, 3: ra62 |
|
GSE22935 |
| Quan, Lili et al. (2025) HIV-1 Tat Protein Exposure Alters the Morphological Characteristics and Gene Expression in the Primary Mouse Cortex Endothelial Cells and Human Brain Microvascular Endothelial Cells.; Cell Mol Neurobiol, 46: 9 |
|
GSE307483 |
| Quante, Timo et al. (2012) Mutant p53 is a transcriptional co-factor that binds to G-rich regulatory regions of active genes and generates transcriptional plasticity.; Cell Cycle, 11: 3290-303 |
|
GSE35454 |
| Quaranta, Roberto et al. (2018) Revised roles of ISL1 in a hES cell-based model of human heart chamber specification.; Elife, 7: [no pages] |
|
GSE100592 |
| Quarta, Carmelo et al. (2017) Molecular Integration of Incretin and Glucocorticoid Action Reverses Immunometabolic Dysfunction and Obesity.; Cell Metab, 26: 620-632.e6 |
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GSE102415 |
| Quarta, Carmelo et al. (2019) Functional identity of hypothalamic melanocortin neurons depends on Tbx3.; Nat Metab, 1: 222-235 |
|
GSE119883 |
| Quartier, Angélique et al. (2018) Genes and Pathways Regulated by Androgens in Human Neural Cells, Potential Candidates for the Male Excess in Autism Spectrum Disorder.; Biol Psychiatry, 84: 239-252 |
|
GSE86457 |
| Quartier, Pierre et al. (2011) A multicentre, randomised, double-blind, placebo-controlled trial with the interleukin-1 receptor antagonist anakinra in patients with systemic-onset juvenile idiopathic arthritis (ANAJIS trial).; Ann Rheum Dis, 70: 747-54 |
|
GSE17590 |
| Quesnel-Vallières, Mathieu et al. (2015) Essential roles for the splicing regulator nSR100/SRRM4 during nervous system development.; Genes Dev, 29: 746-59 |
|
GSE65818 |
| Quesnel-Vallières, Mathieu et al. (2016) Misregulation of an Activity-Dependent Splicing Network as a Common Mechanism Underlying Autism Spectrum Disorders.; Mol Cell, 64: 1023-1034 |
|
GSE89984 |
| Quigley, David A et al. (2011) Network analysis of skin tumor progression identifies a rewired genetic architecture affecting inflammation and tumor susceptibility.; Genome Biol, 12: R5 |
|
GSE21247 GSE21263 |
| Quigley, David A et al. (2014) The 5p12 breast cancer susceptibility locus affects MRPS30 expression in estrogen-receptor positive tumors.; Mol Oncol, 8: 273-84 |
|
GSE48067 |
| Quigley, David A et al. (2016) Gene Expression Architecture of Mouse Dorsal and Tail Skin Reveals Functional Differences in Inflammation and Cancer.; Cell Rep, 16: 1153-1165 |
|
GSE82067 |
| Quigley, Michael et al. (2010) Transcriptional analysis of HIV-specific CD8+ T cells shows that PD-1 inhibits T cell function by upregulating BATF.; Nat Med, 16: 1147-51 |
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GSE24081 GSE24026 |
| Quillé, Marie-Lise et al. (2011) High-throughput analysis of promoter occupancy reveals new targets for Arx, a gene mutated in mental retardation and interneuronopathies.; PLoS One, 6: e25181 |
|
GSE30190 |
| Quinlan, Seán et al. (2024) Early life phenobarbital exposure dysregulates the hippocampal transcriptome.; Front Pharmacol, 15: 1340691 |
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GSE247577 |
| Quinn, Matthew A et al. (2018) Estrogen Deficiency Promotes Hepatic Steatosis via a Glucocorticoid Receptor-Dependent Mechanism in Mice.; Cell Rep, 22: 2690-2701 |
|
GSE99309 |
| Quintanal-Villalonga, Alvaro et al. (2024) CDC7 inhibition impairs neuroendocrine transformation in lung and prostate tumors through MYC degradation.; Signal Transduct Target Ther, 9: 189 |
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GSE252567 GSE252566 |
| Quintela, Telma et al. (2013) Analysis of the effects of sex hormone background on the rat choroid plexus transcriptome by cDNA microarrays.; PLoS One, 8: e60199 |
|
GSE87045 |
| Quintela, Telma et al. (2015) Gene expression profiling in the hippocampus of orchidectomized rats.; J Mol Neurosci, 55: 198-205 |
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GSE87188 |
| Quintes, Susanne et al. (2016) Zeb2 is essential for Schwann cell differentiation, myelination and nerve repair.; Nat Neurosci, 19: 1050-1059 |
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GSE76027 |
| Quinti, Luisa et al. (2016) SIRT2- and NRF2-Targeting Thiazole-Containing Compound with Therapeutic Activity in Huntington's Disease Models.; Cell Chem Biol, 23: 849-861 |
|
GSE49392 |
| Quinton, Lee J et al. (2012) Hepatocyte-specific mutation of both NF-?B RelA and STAT3 abrogates the acute phase response in mice.; J Clin Invest, 122: 1758-63 |
|
GSE35516 |
| Quiroga, I Y et al. (2022) Synthetic amyloid beta does not induce a robust transcriptional response in innate immune cell culture systems.; J Neuroinflammation, 19: 99 |
|
GSE181153 |
| Quiroz-Figueroa, Katherine et al. (2021) TRIB1 regulates LDL metabolism through CEBPα-mediated effects on the LDL receptor in hepatocytes.; J Clin Invest, 131: [no pages] |
|
GSE158815 |
| Raas, Quentin et al. (2023) Peroxisomal defects in microglial cells induce a disease-associated microglial signature.; Front Mol Neurosci, 16: 1170313 |
|
GSE200022 |
| Rabadan, M Angeles et al. (2022) An in vitro model of neuronal ensembles.; Nat Commun, 13: 3340 |
|
GSE123652 |
| Rabani, Michal et al. (2014) High-resolution sequencing and modeling identifies distinct dynamic RNA regulatory strategies.; Cell, 159: 1698-710 |
|
GSE56977.2 |
| Rabenstein, Hannah et al. (2014) Differential kinetics of antigen dependency of CD4+ and CD8+ T cells.; J Immunol, 192: 3507-17 |
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GSE49063 |
| Rabiee, Atefeh et al. (2021) White adipose remodeling during browning in mice involves YBX1 to drive thermogenic commitment.; Mol Metab, 44: 101137 |
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GSE149083 |
| Rabin, Stuart J et al. (2010) Sporadic ALS has compartment-specific aberrant exon splicing and altered cell-matrix adhesion biology.; Hum Mol Genet, 19: 313-28 |
|
GSE18920 |
| Rabot, Sylvie et al. (2010) Germ-free C57BL/6J mice are resistant to high-fat-diet-induced insulin resistance and have altered cholesterol metabolism.; FASEB J, 24: 4948-59 |
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GSE19038 |
| Rached, Marie-Therese et al. (2019) Deletion of myeloid IRS2 enhances adipose tissue sympathetic nerve function and limits obesity.; Mol Metab, 20: 38-50 |
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GSE123180 |
| Racioppi, Luigi et al. (2017) Calcium/calmodulin-dependent kinase kinase 2 regulates hematopoietic stem and progenitor cell regeneration.; Cell Death Dis, 8: e3076 |
|
GSE95733 |
| Radcliffe, Richard A et al. (2020) Systems genetics analysis of the LXS recombinant inbred mouse strains:Genetic and molecular insights into acute ethanol tolerance.; PLoS One, 15: e0240253 |
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GSE157215 |
| Rademacher, Sebastian et al. (2025) PTEN controls alternative splicing of autism spectrum disorder-associated transcripts in primary neurons.; Brain, 148: 47-54 |
|
GSE182975 |
| Rademakers, Rosa et al. (2021) Loss of Tmem106b leads to cerebellum Purkinje cell death and motor deficits.; Brain Pathol, [no vol.]: e12945 |
|
GSE165105 |
| Radenkovic, Silvia et al. (2024) Neural and metabolic dysregulation in PMM2-deficient human in vitro neural models.; Cell Rep, 43: 113883 |
|
GSE251886 |
| Radom-Aizik, Shlomit et al. (2005) Effects of aerobic training on gene expression in skeletal muscle of elderly men.; Med Sci Sports Exerc, 37: 1680-96 |
|
GSE1786 |
| Radom-Aizik, Shlomit et al. (2008) Effects of 30 min of aerobic exercise on gene expression in human neutrophils.; J Appl Physiol (1985), 104: 236-43 |
|
GSE8668 |
| Radom-Aizik, Shlomit et al. (2009) A brief bout of exercise alters gene expression and distinct gene pathways in peripheral blood mononuclear cells of early- and late-pubertal females.; J Appl Physiol (1985), [no vol.]: [no pages] |
|
GSE14642 |
| Radom-Aizik, Shlomit et al. (2009) Brief bout of exercise alters gene expression in peripheral blood mononuclear cells of early- and late-pubertal males.; Pediatr Res, [no vol.]: [no pages] |
|
GSE11761 |
| Radonjic, Marijana et al. (2013) Differential effects of drug interventions and dietary lifestyle in developing type 2 diabetes and complications: a systems biology analysis in LDLr-/- mice.; PLoS One, 8: e56122 |
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GSE57659 |
| Radosevic-Robin, Nina et al. (2021) Recurrence biomarkers of triple negative breast cancer treated with neoadjuvant chemotherapy and anti-EGFR antibodies.; NPJ Breast Cancer, 7: 124 |
|
GSE180775 |
| Radtke, Ina et al. (2009) Genomic analysis reveals few genetic alterations in pediatric acute myeloid leukemia.; Proc Natl Acad Sci U S A, 106: 12944-9 |
|
GSE14471 |
| Raetz, Elizabeth A et al. (2006) Gene expression profiling reveals intrinsic differences between T-cell acute lymphoblastic leukemia and T-cell lymphoblastic lymphoma.; Pediatr Blood Cancer, 47: 130-40 |
|
GSE1577 |
| Raffaello, Anna et al. (2010) JunB transcription factor maintains skeletal muscle mass and promotes hypertrophy.; J Cell Biol, 191: 101-13 |
|
GSE18664 |
| Raffel, Simon et al. (2017) BCAT1 restricts αKG levels in AML stem cells leading to IDHmut-like DNA hypermethylation.; Nature, 551: 384-388 |
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GSE100778 GSE103960 |
| Rafnsdottir, Salvor et al. (2024) SMYD5 is a regulator of the mild hypothermia response.; Cell Rep, 43: 114554 |
|
GSE234688 |
| Ragancokova, Daniela et al. (2014) TSHZ1-dependent gene regulation is essential for olfactory bulb development and olfaction.; J Clin Invest, 124: 1214-27 |
|
GSE51761 |
| Raggi, Chiara et al. (2021) Mitochondrial oxidative metabolism contributes to a cancer stem cell phenotype in cholangiocarcinoma.; J Hepatol, 74: 1373-1385 |
|
GSE162845 |
| Raghavachari, Nalini et al. (2007) Amplified expression profiling of platelet transcriptome reveals changes in arginine metabolic pathways in patients with sickle cell disease.; Circulation, [no vol.]: [no pages] |
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GSE11524 |
| Raghavachari, Nalini et al. (2009) Characterization of whole blood gene expression profiles as a sequel to globin mRNA reduction in patients with sickle cell disease.; PLoS One, 4: e6484 |
|
GSE16728 |
| Raghu, Rajasekaran et al. (2012) Transcriptome analysis of garlic-induced hepatoprotection against alcoholic fatty liver.; J Agric Food Chem, 60: 11104-19 |
|
GSE40334 |
| Raghunandan, Sindhushree et al. (2021) Heme Oxygenase-1 at the Nexus of Endothelial Cell Fate Decision Under Oxidative Stress.; Front Cell Dev Biol, 9: 702974 |
|
GSE72991 |
| Rahal, Rami et al. (2014) Pharmacological and genomic profiling identifies NF-?B-targeted treatment strategies for mantle cell lymphoma.; Nat Med, 20: 87-92 |
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GSE52435 GSE42549 GSE52434 |
| Raheem, Olayinka et al. (2010) Mutant (CCTG)n expansion causes abnormal expression of zinc finger protein 9 (ZNF9) in myotonic dystrophy type 2.; Am J Pathol, 177: 3025-36 |
|
GSE7014 |