List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Pawliczak, Rafal et al. (2005) Influence of IFN-gamma on gene expression in normal human bronchial epithelial cells: modulation of IFN-gamma effects by dexamethasone.; Physiol Genomics, 23: 28-45 |
|
GSE1815 |
| Pawlowski, Traci L et al. (2009) Hippocampal gene expression changes during age-related cognitive decline.; Brain Res, 1256: 101-10 |
|
GSE13799 |
| Paxson, Julia A et al. (2011) Age-dependent decline in mouse lung regeneration with loss of lung fibroblast clonogenicity and increased myofibroblastic differentiation.; PLoS One, 6: e23232 |
|
GSE27964 |
| Payen, Didier et al. (2009) Gene-expression profiling of peripheral blood mononuclear cells in sepsis.; Crit Care Med, 37: 2323-4; author reply 2324 |
|
GSE9960 |
| Paylakhi, Seyed Hassan et al. (2013) FOXC1 in human trabecular meshwork cells is involved in regulatory pathway that includes miR-204, MEIS2, and ITG?1.; Exp Eye Res, 111: 112-21 |
|
GSE40314 |
| Payton, Jacqueline E et al. (2009) High throughput digital quantification of mRNA abundance in primary human acute myeloid leukemia samples.; J Clin Invest, 119: 1714-26 |
|
GSE12662 |
| Paz-Barba, Miriam et al. (2024) Apolipoprotein L genes are novel mediators of inflammation in beta cells.; Diabetologia, 67: 124-136 |
|
GSE218316 |
| Paziewska, Agnieszka et al. (2014) Transcriptional changes between uninflamed ulcerative colitis and familial adenomatous polyposis pouch mucosa can be attributed to an altered immune response.; Acta Biochim Pol, 62: 69-75 |
|
GSE50788 |
| Pazur, Kristijan et al. (2022) Hoxb1 Regulates Distinct Signaling Pathways in Neuromesodermal and Hindbrain Progenitors to Promote Cell Survival and Specification.; Stem Cells, 40: 175-189 |
|
GSE174021 |
| Pearce, Erika L et al. (2009) Enhancing CD8 T-cell memory by modulating fatty acid metabolism.; Nature, [no vol.]: [no pages] |
|
GSE15750 |
| Pearl, Jocelynn R et al. (2019) Genome-Scale Transcriptional Regulatory Network Models of Psychiatric and Neurodegenerative Disorders.; Cell Syst, 8: 122-135.e7 |
|
GSE102122 |
| Pearsall, Sarah M et al. (2023) Lineage Plasticity in SCLC Generates Non-Neuroendocrine Cells Primed for Vasculogenic Mimicry.; J Thorac Oncol, 18: 1362-1385 |
|
GSE240789.2 GSE240789.1 |
| Pearson, Brandon L et al. (2016) Identification of chemicals that mimic transcriptional changes associated with autism, brain aging and neurodegeneration.; Nat Commun, 7: 11173 |
|
GSE70249 |
| Peck, Amy R et al. (2012) Low levels of Stat5a protein in breast cancer are associated with tumor progression and unfavorable clinical outcomes.; Breast Cancer Res, 14: R130 |
|
GSE37781 |
| Peddada, Sailaja et al. (2006) Inhibitors of differentiation (ID1, ID2, ID3 and ID4) genes are neuronal targets of MeCP2 that are elevated in Rett syndrome.; Hum Mol Genet, 15: 2003-14 |
|
GSE4600 |
| Pede, Valerie et al. (2013) Expression of ZAP70 in chronic lymphocytic leukaemia activates NF-?B signalling.; Br J Haematol, 163: 621-30 |
|
GSE51286 |
| Pedemonte, Enrico et al. (2007) The molecular signature of therapeutic mesenchymal stem cells exposes the architecture of the hematopoietic stem cell niche synapse.; BMC Genomics, 8: 65 |
|
GSE5011 |
| Pedersen, Malene B et al. (2007) Gene expression time course in the human skin during elicitation of allergic contact dermatitis.; J Invest Dermatol, 127: 2585-95 |
|
GSE6281 |
| Pediaditakis, Iosif et al. (2021) Modeling alpha-synuclein pathology in a human brain-chip to assess blood-brain barrier disruption.; Nat Commun, 12: 5907 |
|
GSE168870 |
| Pediaditakis, Iosif et al. (2022) A microengineered Brain-Chip to model neuroinflammation in humans.; iScience, 25: 104813 |
|
GSE199787 |
| Pedragosa, Jordi et al. (2018) CNS-border associated macrophages respond to acute ischemic stroke attracting granulocytes and promoting vascular leakage.; Acta Neuropathol Commun, 6: 76 |
|
GSE106931 |
| Pedram, Ali et al. (2013) Estrogen reduces lipid content in the liver exclusively from membrane receptor signaling.; Sci Signal, 6: ra36 |
|
GSE45346 |
| Pedraza, Vincente et al. (2010) Gene expression signatures in breast cancer distinguish phenotype characteristics, histologic subtypes, and tumor invasiveness.; Cancer, 116: 486-96 |
|
GSE10810 |
| Pedro, M Pilar et al. (2024) GPCR Screening Reveals that the Metabolite Receptor HCAR3 Regulates Epithelial Proliferation, Migration, and Cellular Respiration.; J Invest Dermatol, 144: 1311-1321.e7 |
|
GSE228631 |
| Pedroni, Silvia M A et al. (2014) Pregnancy in obese mice protects selectively against visceral adiposity and is associated with increased adipocyte estrogen signalling.; PLoS One, 9: e94680 |
|
GSE48811 |
| Pedrosa, Erika et al. (2011) Development of patient-specific neurons in schizophrenia using induced pluripotent stem cells.; J Neurogenet, 25: 88-103 |
|
GSE26629 |
| Peek, Stacey L et al. (2022) p53-mediated neurodegeneration in the absence of the nuclear protein Akirin2.; iScience, 25: 103814 |
|
GSE178844.2 GSE178844.1 |
| Peel, Michael T et al. (2018) Transcriptome Analyses of Female Somatotropes and Lactotropes Reveal Novel Regulators of Cell Identity in the Pituitary.; Endocrinology, 159: 3965-3980 |
|
GSE118863 |
| Peeters, Janneke G C et al. (2015) Inhibition of Super-Enhancer Activity in Autoinflammatory Site-Derived T Cells Reduces Disease-Associated Gene Expression.; Cell Rep, 12: 1986-96 |
|
GSE71595 |
| Peffer, Melanie E et al. (2014) Caveolin-1 regulates genomic action of the glucocorticoid receptor in neural stem cells.; Mol Cell Biol, 34: 2611-23 |
|
GSE49804 |
| Pehkonen, Henna et al. (2018) Liprin-α1 modulates cancer cell signaling by transmembrane protein CD82 in adhesive membrane domains linked to cytoskeleton.; Cell Commun Signal, 16: 41 |
|
GSE108392 |
| Pei, Fei et al. (2023) Sensory nerve niche regulates mesenchymal stem cell homeostasis via FGF/mTOR/autophagy axis.; Nat Commun, 14: 344 |
|
GSE197785 |
| Pei, Huadong et al. (2009) FKBP51 affects cancer cell response to chemotherapy by negatively regulating Akt.; Cancer Cell, 16: 259-66 |
|
GSE16515 |
| Pei, Liming et al. (2011) Thyroid hormone receptor repression is linked to type I pneumocyte-associated respiratory distress syndrome.; Nat Med, 17: 1466-72 |
|
GSE30661 |
| Pei, Liming et al. (2015) Dependence of hippocampal function on ERR?-regulated mitochondrial metabolism.; Cell Metab, 21: 628-36 |
|
GSE47133 |
| Pei, Luxin et al. (2021) Plasma Metabolomics Reveals Dysregulated Metabolic Signatures in HIV-Associated Immune Reconstitution Inflammatory Syndrome.; Front Immunol, 12: 693074 |
|
GSE173697.2 GSE173697.1 |
| Pei, Yanxin et al. (2012) An animal model of MYC-driven medulloblastoma.; Cancer Cell, 21: 155-67 |
|
GSE34126 |
| Pei, Yanxin et al. (2016) HDAC and PI3K Antagonists Cooperate to Inhibit Growth of MYC-Driven Medulloblastoma.; Cancer Cell, 29: 311-323 |
|
GSE69410 |
| Peinado, Paola et al. (2025) Intrinsic electrical activity drives small-cell lung cancer progression.; Nature, 639: 765-775 |
|
GSE270281 |
| Peinado-Serrano, Javier et al. (2022) A Six-Gene Prognostic and Predictive Radiotherapy-Based Signature for Early and Locally Advanced Stages in Non-Small-Cell Lung Cancer.; Cancers (Basel), 14: [no pages] |
|
GSE197109 |
| Peiris, Heshan et al. (2018) Discovering human diabetes-risk gene function with genetics and physiological assays.; Nat Commun, 9: 3855 |
|
GSE116369 |
| Peixoto, Lucia et al. (2015) How data analysis affects power, reproducibility and biological insight of RNA-seq studies in complex datasets.; Nucleic Acids Res, 43: 7664-74 |
|
GSE63412 |
| Peixoto, Lucia L et al. (2015) Memory acquisition and retrieval impact different epigenetic processes that regulate gene expression.; BMC Genomics, 16 Suppl 5: S5 |
|
GSE50423 |
| Pekala, Martyna et al. (2026) Lcn2 deficiency leads to long-lasting social impairments independent of maternal immune activation.; J Neuroinflammation, 23: [no pages] |
|
GSE303157 |
| Peleg, Shahaf et al. (2010) Altered histone acetylation is associated with age-dependent memory impairment in mice.; Science, 328: 753-6 |
|
GSE20270 |
| Pellagatti, A et al. (2010) Deregulated gene expression pathways in myelodysplastic syndrome hematopoietic stem cells.; Leukemia, 24: 756-64 |
|
GSE19429 |
| Pellagatti, Andrea et al. (2006) Gene expression profiles of CD34+ cells in myelodysplastic syndromes: involvement of interferon-stimulated genes and correlation to FAB subtype and karyotype.; Blood, 108: 337-45 |
|
GSE4619 |
| Pellegrini, Kathryn L et al. (2016) Application of small RNA sequencing to identify microRNAs in acute kidney injury and fibrosis.; Toxicol Appl Pharmacol, 312: 42-52 |
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GSE61328 |
| Pellegrini, Matteo et al. (2008) Expression profile of CREB knockdown in myeloid leukemia cells.; BMC Cancer, 8: 264 |
|
GSE12056 |
| Pellegrino, R et al. (2012) Whole blood genome-wide gene expression profile in males after prolonged wakefulness and sleep recovery.; Physiol Genomics, 44: 1003-12 |
|
GSE37667 |
| Pelosi, Emanuele et al. (2013) Constitutively active Foxo3 in oocytes preserves ovarian reserve in mice.; Nat Commun, 4: 1843 |
|
GSE45389 |
| Peltier, Daniel C et al. (2010) Human neuronal cells possess functional cytoplasmic and TLR-mediated innate immune pathways influenced by phosphatidylinositol-3 kinase signaling.; J Immunol, 184: 7010-21 |
|
GSE16450 GSE16451 |
| Peluffo, Guillermo et al. (2019) EN1Is a Transcriptional Dependency in Triple-Negative Breast Cancer Associated with Brain Metastasis.; Cancer Res, 79: 4173-4183 |
|
GSE120957 |
| Pembroke, William G et al. (2015) Temporal transcriptomics suggest that twin-peaking genes reset the clock.; Elife, 4: [no pages] |
|
GSE72095 |
| Pena, Olga M et al. (2014) An Endotoxin Tolerance Signature Predicts Sepsis and Organ Dysfunction at Initial Clinical Presentation.; EBioMedicine, 1: 64-71 |
|
GSE63311 |
| Pencovich, Niv et al. (2011) Dynamic combinatorial interactions of RUNX1 and cooperating partners regulates megakaryocytic differentiation in cell line models.; Blood, 117: e1-14 |
|
GSE24778 |
| Pencovich, Niv et al. (2013) Cell-autonomous function of Runx1 transcriptionally regulates mouse megakaryocytic maturation.; PLoS One, 8: e64248 |
|
GSE45373 |
| Pendergrass, Sarah A et al. (2010) Limited systemic sclerosis patients with pulmonary arterial hypertension show biomarkers of inflammation and vascular injury.; PLoS One, 5: e12106 |
|
GSE19617 |
| Pendergrass, Sarah A et al. (2012) Intrinsic gene expression subsets of diffuse cutaneous systemic sclerosis are stable in serial skin biopsies.; J Invest Dermatol, 132: 1363-73 |
|
GSE32413 |
| Pendse, Salil N et al. (2017) Information-dependent enrichment analysis reveals time-dependent transcriptional regulation of the estrogen pathway of toxicity.; Arch Toxicol, 91: 1749-1762 |
|
GSE84981 |
| Pendyala, Swaroop et al. (2011) Diet-induced weight loss reduces colorectal inflammation: implications for colorectal carcinogenesis.; Am J Clin Nutr, 93: 234-42 |
|
GSE20931 |
| Peng, Audrey Yi Tyan et al. (2020) Loss of TDP-43 in astrocytes leads to motor deficits by triggering A1-like reactive phenotype and triglial dysfunction.; Proc Natl Acad Sci U S A, 117: 29101-29112 |
|
GSE156542 |
| Peng, Bing-Ling et al. (2024) A CARM1 Inhibitor Potently Suppresses Breast Cancer Both In Vitro and In Vivo.; J Med Chem, 67: 7921-7934 |
|
GSE243316 |
| Peng, Changgeng et al. (2017) miR-183 cluster scales mechanical pain sensitivity by regulating basal and neuropathic pain genes.; Science, 356: 1168-1171 |
|
GSE99265 |
| Peng, Changgeng et al. (2018) Termination of cell-type specification gene programs by the miR-183 cluster determines the population sizes of low-threshold mechanosensitive neurons.; Development, 145: [no pages] |
|
GSE110714 |
| Peng, Jianhua et al. (2017) High-Throughput Sequencing and Co-Expression Network Analysis of lncRNAs and mRNAs in Early Brain Injury Following Experimental Subarachnoid Haemorrhage.; Sci Rep, 7: 46577 |
|
GSE79416 |
| Peng, Jianya et al. (2022) Monocytes maintain central nervous system homeostasis following helminth-induced inflammation.; Proc Natl Acad Sci U S A, 119: e2201645119 |
|
GSE190493 |
| Peng, Jiayin et al. (2023) Gli1 marks a sentinel muscle stem cell population for muscle regeneration.; Nat Commun, 14: 6993 |
|
GSE239944 |
| Peng, Katherine Y et al. (2024) Apolipoprotein E2 Expression Alters Endosomal Pathways in a Mouse Model With Increased Brain Exosome Levels During Aging.; Traffic, 25: e12937 |
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GSE188267 GSE234711 |
| Peng, Ruoqi et al. (2013) Bleomycin induces molecular changes directly relevant to idiopathic pulmonary fibrosis: a model for "active" disease.; PLoS One, 8: e59348 |
|
GSE40151 |
| Peng, Shaohua et al. (2013) Tumor grafts derived from patients with head and neck squamous carcinoma authentically maintain the molecular and histologic characteristics of human cancers.; J Transl Med, 11: 198 |
|
GSE45153 |
| Peng, Shaomin et al. (2013) Engineering a blood-retinal barrier with human embryonic stem cell-derived retinal pigment epithelium: transcriptome and functional analysis.; Stem Cells Transl Med, 2: 534-44 |
|
GSE36695 |
| Peng, Tao et al. (2009) Evasion of the mucosal innate immune system by herpes simplex virus type 2.; J Virol, 83: 12559-68 |
|
GSE18527 |
| Peng, Tianran et al. (2020) STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells.; Genome Biol, 21: 243 |
|
GSE143543 |
| Peng, Xinxia et al. (2009) Computational identification of hepatitis C virus associated microRNA-mRNA regulatory modules in human livers.; BMC Genomics, 10: 373 |
|
GSE15331 |
| Peng, Yi-Rong et al. (2017) Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell.; Neuron, 95: 869-883.e6 |
|
GSE90648 GSE90652 |
| Peng, Yi-Rong et al. (2020) Binary Fate Choice between Closely Related Interneuronal Types Is Determined by a Fezf1-Dependent Postmitotic Transcriptional Switch.; Neuron, 105: 464-474.e6 |
|
GSE132505 |
| Peng, Zhao Feng et al. (2012) Multifaceted role of nitric oxide in an in vitro mouse neuronal injury model: transcriptomic profiling defines the temporal recruitment of death signalling cascades.; J Cell Mol Med, 16: 41-58 |
|
GSE22087 |
| Peng, Zhong et al. (2023) ASIC1a affects hypothalamic signaling and regulates the daily rhythm of body temperature in mice.; Commun Biol, 6: 857 |
|
GSE185718 |
| Penkov, Dmitry et al. (2013) Analysis of the DNA-binding profile and function of TALE homeoproteins reveals their specialization and specific interactions with Hox genes/proteins.; Cell Rep, 3: 1321-33 |
|
GSE39605 |
| Penney, Jay et al. (2024) iPSC-derived microglia carrying the TREM2 R47H/+ mutation are proinflammatory and promote synapse loss.; Glia, 72: 452-469 |
|
GSE241858 |
| Penning, Amber et al. (2024) NACC2, a molecular effector of miR-132 regulation at the interface between adult neurogenesis and Alzheimer's disease.; Sci Rep, 14: 21163 |
|
GSE268144 |
| Pennisi, Angela et al. (2010) Consequences of daily administered parathyroid hormone on myeloma growth, bone disease, and molecular profiling of whole myelomatous bone.; PLoS One, 5: e15233 |
|
GSE24068 |
| Pensieri, Pasquale et al. (2021) Photoreceptor cKO of OTX2 enhances OTX2 intercellular transfer in the retina and causes photophobia.; eNeuro, [no vol.]: [no pages] |
|
GSE138097 |
| Pensold, Daniel et al. (2020) DNA Methylation-Mediated Modulation of Endocytosis as Potential Mechanism for Synaptic Function Regulation in Murine Inhibitory Cortical Interneurons.; Cereb Cortex, 30: 3921-3937 |
|
GSE145025 |
| Pepin, François et al. (2012) Gene-expression profiling of microdissected breast cancer microvasculature identifies distinct tumor vascular subtypes.; Breast Cancer Res, 14: R120 |
|
GSE15363 |
| Pepino, Lucie et al. (2023) Formalin-evoked pain triggers sex-specific behavior and spinal immune response.; Sci Rep, 13: 9515 |
|
GSE226443 |
| Pepper, C et al. (2007) Highly purified CD38+ and CD38- sub-clones derived from the same chronic lymphocytic leukemia patient have distinct gene expression signatures despite their monoclonal origin.; Leukemia, 21: 687-96 |
|
GSE6321 |
| Peppercorn, Katie et al. (2022) Secreted Amyloid Precursor Protein Alpha, a Neuroprotective Protein in the Brain Has Widespread Effects on the Transcriptome and Proteome of Human Inducible Pluripotent Stem Cell-Derived Glutamatergic Neurons Related to Memory Mechanisms.; Front Neurosci, 16: 858524 |
|
GSE197725 |
| Pera, Joanna et al. (2010) Gene expression profiles in human ruptured and unruptured intracranial aneurysms: what is the role of inflammation?; Stroke, 41: 224-31 |
|
GSE15629 |
| Pera, Joanna et al. (2013) Gene expression profiling of blood in ruptured intracranial aneurysms: in search of biomarkers.; J Cereb Blood Flow Metab, 33: 1025-31 |
|
GSE36791 |
| Peña, Catherine J et al. (2017) Early life stress confers lifelong stress susceptibility in mice via ventral tegmental area OTX2.; Science, 356: 1185-1188 |
|
GSE89692 |
| Peña-Llopis, Samuel et al. (2012) BAP1 loss defines a new class of renal cell carcinoma.; Nat Genet, 44: 751-9 |
|
GSE36895 |
| Pénzes, Zsófia et al. (2024) Anandamide modulation of monocyte-derived Langerhans cells: implications for immune homeostasis and skin inflammation.; Front Immunol, 15: 1423776 |
|
GSE266075 |