List of all 16,856 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Smits, Jos G A et al. (2023) Identification of the regulatory circuit governing corneal epithelial fate determination and disease.; PLoS Biol, 21: e3002336 |
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GSE206922 GSE242990 |
| Smits, Lisa M et al. (2019) Modeling Parkinson's disease in midbrain-like organoids.; NPJ Parkinsons Dis, 5: 5 |
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GSE127967 |
| Smythies, Lesley E et al. (2024) Human intestinal stromal cells promote homeostasis in normal mucosa but inflammation in Crohn's disease in a retinoic acid-deficient manner.; Mucosal Immunol, [no vol.]: [no pages] |
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GSE178994 |
| Snijders, Antoine M et al. (2015) Expression profiling reveals transcriptional regulation by Fbxw7/mTOR pathway in radiation-induced mouse thymic lymphomas.; Oncotarget, 6: 44794-805 |
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GSE71975 |
| Snyder, Elizabeth et al. (2015) Compound Heterozygosity for Y Box Proteins Causes Sterility Due to Loss of Translational Repression.; PLoS Genet, 11: e1005690 |
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GSE73653 |
| Snyder, Elizabeth M et al. (2010) Gene expression in the efferent ducts, epididymis, and vas deferens during embryonic development of the mouse.; Dev Dyn, 239: 2479-91 |
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GSE22616 |
| Snyder, Joshua C et al. (2010) Clara cells attenuate the inflammatory response through regulation of macrophage behavior.; Am J Respir Cell Mol Biol, [no vol.]: [no pages] |
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GSE16409 |
| So, Jae-Seon et al. (2012) Silencing of lipid metabolism genes through IRE1?-mediated mRNA decay lowers plasma lipids in mice.; Cell Metab, 16: 487-99 |
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GSE40515 |
| So, Wing Yan et al. (2023) Paired box 6 gene delivery preserves beta cells and improves islet transplantation efficacy.; EMBO Mol Med, 15: e17928 |
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GSE242338 |
| Soares, Milena B P et al. (2011) Reversion of gene expression alterations in hearts of mice with chronic chagasic cardiomyopathy after transplantation of bone marrow cells.; Cell Cycle, 10: 1448-55 |
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GSE24088 |
| Sobczyk, Karmela et al. (2015) Ephrin/Ephrin receptor expression in ammonia-treated rat astrocytes and in human cerebral cortex in hepatic encephalopathy.; Neurochem Res, 40: 274-83 |
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GSE57193 |
| Soberanes, Saul et al. (2019) Metformin Targets Mitochondrial Electron Transport to Reduce Air-Pollution-Induced Thrombosis.; Cell Metab, 29: 335-347.e5 |
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GSE98731 |
| Soboleva, Tatiana A et al. (2017) A new link between transcriptional initiation and pre-mRNA splicing: The RNA binding histone variant H2A.B.; PLoS Genet, 13: e1006633 |
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GSE92770 |
| Sobue, Akira et al. (2021) Microglial gene signature reveals loss of homeostatic microglia associated with neurodegeneration of Alzheimer's disease.; Acta Neuropathol Commun, 9: 1 |
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GSE236268.2 |
| Sobue, Sayaka et al. (2016) Characterization of gene expression profiling of mouse tissues obtained during the postmortem interval.; Exp Mol Pathol, 100: 482-92 |
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GSE78203 |
| Sodhi, Komal et al. (2021) Role of adipocyte Na,K-ATPase oxidant amplification loop in cognitive decline and neurodegeneration.; iScience, 24: 103262 |
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GSE164293 GSE164294 |
| Soehn, Anne S et al. (2009) Periphilin is strongly expressed in the murine nervous system and is indispensable for murine development.; Genesis, 47: 697-707 |
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GSE14059 |
| Soejima-Kusunoki, Aki et al. (2022) The Protective Effect of Edaravone on TDP-43 Plus Oxidative Stress-Induced Neurotoxicity in Neuronal Cells: Analysis of Its Neuroprotective Mechanisms Using RNA Sequencing.; Pharmaceuticals (Basel), 15: [no pages] |
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GSE207578 |
| Soelter, Tabea M et al. (2025) Evaluation of altered cell-cell communication between glia and neurons in the hippocampus of 3xTg-AD mice at two time points.; J Cell Commun Signal, 19: e70006 |
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GSE261596 |
| Sofueva, Sevil et al. (2013) Cohesin-mediated interactions organize chromosomal domain architecture.; EMBO J, 32: 3119-29 |
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GSE48965 |
| Sohn, Bo Hwa et al. (2016) Inactivation of Hippo Pathway Is Significantly Associated with Poor Prognosis in Hepatocellular Carcinoma.; Clin Cancer Res, 22: 1256-64 |
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GSE32510 |
| Sohn, Jihee et al. (2022) A new murine model of Barth syndrome neutropenia links TAFAZZIN deficiency to increased ER stress-induced apoptosis.; Blood Adv, 6: 2557-2577 |
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GSE151006 GSE151007 |
| Sohn, Paul et al. (2023) Stromal Interaction Molecule 1 Maintains β-Cell Identity and Function in Female Mice Through Preservation of G-Protein-Coupled Estrogen Receptor 1 Signaling.; Diabetes, 72: 1433-1445 |
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GSE208135 |
| Sohn, Philip et al. (2010) Molecular profiling of the developing mouse axial skeleton: a role for Tgfbr2 in the development of the intervertebral disc.; BMC Dev Biol, 10: 29 |
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GSE18648 GSE18647 |
| Sohni, Abhishek et al. (2012) TGF?1-induced Baf60c regulates both smooth muscle cell commitment and quiescence.; PLoS One, 7: e47629 |
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GSE32990 |
| Soini, Tea et al. (2018) Transcription factor GATA4 associates with mesenchymal-like gene expression in human hepatoblastoma cells.; Tumour Biol, 40: 1010428318785498 |
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GSE110788 |
| Sojka, Dorothy K et al. (2014) Tissue-resident natural killer (NK) cells are cell lineages distinct from thymic and conventional splenic NK cells.; Elife, 3: e01659 |
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GSE52043 |
| Sokolov, David et al. (2021) Nuclear NAD+-biosynthetic enzyme NMNAT1 facilitates development and early survival of retinal neurons.; Elife, 10: [no pages] |
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GSE178312 |
| Sokpor, Godwin et al. (2021) Loss of BAF Complex in Developing Cortex Perturbs Radial Neuronal Migration in a WNT Signaling-Dependent Manner.; Front Mol Neurosci, 14: 687581 |
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GSE175362 |
| Solaimani Kartalaei, Parham et al. (2015) Whole-transcriptome analysis of endothelial to hematopoietic stem cell transition reveals a requirement for Gpr56 in HSC generation.; J Exp Med, 212: 93-106 |
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GSE63316 |
| Solanas, Guiomar et al. (2017) Aged Stem Cells Reprogram Their Daily Rhythmic Functions to Adapt to Stress.; Cell, 170: 678-692.e20 |
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GSE84508 GSE84510 GSE84511 |
| Solano Fonseca, Rene et al. (2021) Glycolytic preconditioning in astrocytes mitigates trauma-induced neurodegeneration.; Elife, 10: [no pages] |
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GSE173431 |
| Soldan, Samantha S et al. (2021) Epigenetic Plasticity Enables CNS-Trafficking of EBV-infected B Lymphocytes.; PLoS Pathog, 17: e1009618 |
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GSE172475 |
| Soldati, Chiara et al. (2012) Repressor element 1 silencing transcription factor couples loss of pluripotency with neural induction and neural differentiation.; Stem Cells, 30: 425-34 |
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GSE34244 |
| Soldati, Chiara et al. (2013) Dysregulation of REST-regulated coding and non-coding RNAs in a cellular model of Huntington's disease.; J Neurochem, 124: 418-30 |
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GSE42107 |
| Soldevilla, Beatriz et al. (2023) MicroRNA signature and integrative omics analyses define prognostic clusters and key pathways driving prognosis in patients with neuroendocrine neoplasms.; Mol Oncol, 17: 582-597 |
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GSE211485 |
| Soldner, Frank et al. (2009) Parkinson's disease patient-derived induced pluripotent stem cells free of viral reprogramming factors.; Cell, 136: 964-77 |
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GSE14711 |
| Soldner, Frank et al. (2011) Generation of isogenic pluripotent stem cells differing exclusively at two early onset Parkinson point mutations.; Cell, 146: 318-31 |
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GSE29773 |
| Soleimani, Vahab D et al. (2012) Transcriptional dominance of Pax7 in adult myogenesis is due to high-affinity recognition of homeodomain motifs.; Dev Cell, 22: 1208-20 |
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GSE32266 |
| Solga, Anne C et al. (2015) RNA-sequencing reveals oligodendrocyte and neuronal transcripts in microglia relevant to central nervous system disease.; Glia, 63: 531-48 |
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GSE53789 |
| Soliai, Marcus M et al. (2021) Multi-omics colocalization with genome-wide association studies reveals a context-specific genetic mechanism at a childhood onset asthma risk locus.; Genome Med, 13: 157 |
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GSE172367 |
| Soliera, Angela Rachele et al. (2008) Transcriptional repression of c-Myb and GATA-2 is involved in the biologic effects of C/EBPalpha in p210BCR/ABL-expressing cells.; Blood, 112: 1942-50 |
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GSE11766 |
| Solinski, Hans Jürgen et al. (2019) Nppb Neurons Are Sensors of Mast Cell-Induced Itch.; Cell Rep, 26: 3561-3573.e4 |
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GSE125626 |
| Sollinger, Christina et al. (2017) Erythropoietin Signaling Regulates Key Epigenetic and Transcription Networks in Fetal Neural Progenitor Cells.; Sci Rep, 7: 14381 |
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GSE99372 |
| Solnestam, Beata Werne et al. (2012) Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs.; BMC Genomics, 13: 574 |
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GSE60296 |
| Solorio-Rodriguez, Silvia Aidee et al. (2023) Single-Walled vs. Multi-Walled Carbon Nanotubes: Influence of Physico-Chemical Properties on Toxicogenomics Responses in Mouse Lungs.; Nanomaterials (Basel), 13: [no pages] |
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GSE223520 |
| Solouki, Abbas M et al. (2010) A genome-wide association study identifies a susceptibility locus for refractive errors and myopia at 15q14.; Nat Genet, 42: 897-901 |
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GSE20191 |
| Solvie, Daniel et al. (2022) MYC multimers shield stalled replication forks from RNA polymerase.; Nature, 612: 148-155 |
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GSE183094 |
| Somasundaram, Preethi et al. (2023) Coordinated stimulation of axon regenerative and neurodegenerative transcriptional programs by Atf4 following optic nerve injury.; bioRxiv, [no vol.]: [no pages] |
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GSE223321 |
| Somel, Mehmet et al. (2008) Human and chimpanzee gene expression differences replicated in mice fed different diets.; PLoS One, 3: e1504 |
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GSE6297 GSE6285 |
| Somel, Mehmet et al. (2009) Transcriptional neoteny in the human brain.; Proc Natl Acad Sci U S A, 106: 5743-8 |
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GSE11528 GSE15163 GSE11512.1 |
| Somel, Mehmet et al. (2010) MicroRNA, mRNA, and protein expression link development and aging in human and macaque brain.; Genome Res, 20: 1207-18 |
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GSE17757.1 |
| Somel, Mehmet et al. (2011) MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates.; PLoS Biol, 9: e1001214 |
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GSE22569 GSE22521 |
| Somers, Sarah M et al. (2022) Engineering Skeletal Muscle Grafts with PAX7::GFP-Sorted Human Pluripotent Stem Cell-Derived Myogenic Progenitors on Fibrin Microfiber Bundles for Tissue Regeneration.; Bioengineering (Basel), 9: [no pages] |
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GSE178784 |
| Somerville, Tim D D et al. (2015) Frequent Derepression of the Mesenchymal Transcription Factor Gene FOXC1 in Acute Myeloid Leukemia.; Cancer Cell, 28: 329-42 |
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GSE66253 |
| Someya, Shinichi et al. (2007) Genes encoding mitochondrial respiratory chain components are profoundly down-regulated with aging in the cochlea of DBA/2J mice.; Brain Res, 1182: 26-33 |
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GSE6045 |
| Someya, Shinichi et al. (2008) The role of mtDNA mutations in the pathogenesis of age-related hearing loss in mice carrying a mutator DNA polymerase gamma.; Neurobiol Aging, 29: 1080-92 |
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GSE4866 |
| Sommariva, Michele et al. (2011) TLR9 agonists oppositely modulate DNA repair genes in tumor versus immune cells and enhance chemotherapy effects.; Cancer Res, 71: 6382-90 |
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GSE23442 GSE23441 GSE23440 |
| Sommer, Daniel et al. (2022) Aging-Dependent Altered Transcriptional Programs Underlie Activity Impairments in Human C9orf72-Mutant Motor Neurons.; Front Mol Neurosci, 15: 894230 |
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GSE201407 |
| Son, A et al. (2013) TWEAK/Fn14 pathway promotes a T helper 2-type chronic colitis with fibrosis in mice.; Mucosal Immunol, 6: 1131-42 |
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GSE36806 |
| Son, Esther Y et al. (2011) Conversion of mouse and human fibroblasts into functional spinal motor neurons.; Cell Stem Cell, 9: 205-18 |
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GSE31160 |
| Son, Ga-Yeon et al. (2023) The Ca2+channel ORAI1 is a regulator of oral cancer growth and nociceptive pain.; Sci Signal, 16: eadf9535 |
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GSE236706 |
| Sona, Chandan et al. (2025) Glutamatergic argonaute2 promotes the formation of the neurovascular unit in mice.; Sci Signal, 18: eadl6745 |
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GSE279548 |
| Song, Bing et al. (2019) Targeting FOXA1-mediated repression of TGF-β signaling suppresses castration-resistant prostate cancer progression.; J Clin Invest, 129: 569-582 |
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GSE119758 |
| Song, Changgeng et al. (2023) Aminoprocalcitonin protects against hippocampal neuronal death via preserving oxidative phosphorylation in refractory status epilepticus.; Cell Death Discov, 9: 144 |
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GSE217955 |
| Song, Dan et al. (2024) Lin28a forms an RNA-binding complex with Igf2bp3 to regulate m6A-modified stress response genes in stress granules of muscle stem cells.; Cell Prolif, 57: e13707 |
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GSE262720 |
| Song, Dongweon et al. (2008) Antitumor activity and molecular effects of the novel heat shock protein 90 inhibitor, IPI-504, in pancreatic cancer.; Mol Cancer Ther, 7: 3275-84 |
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GSE12113 |
| Song, Guang-Yuan et al. (2023) A single amino acid substitution in the capsid protein of Zika virus contributes to a neurovirulent phenotype.; Nat Commun, 14: 6832 |
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GSE226495 |
| Song, Hailong et al. (2016) Effects of aged garlic extract and FruArg on gene expression and signaling pathways in lipopolysaccharide-activated microglial cells.; Sci Rep, 6: 35323 |
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GSE87531 |
| Song, Hannah W et al. (2020) Transcriptomic comparison of human and mouse brain microvessels.; Sci Rep, 10: 12358 |
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GSE142209.1 GSE142209.2 |
| Song, Hao et al. (2021) METTL3-mediated m6A RNA methylation promotes the anti-tumour immunity of natural killer cells.; Nat Commun, 12: 5522 |
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GSE180053 |
| Song, Jingyi et al. (2023) Normobaric hypoxia shows enhanced FOXO1 signaling in obese mouse gastrocnemius muscle linked to metabolism and muscle structure and neuromuscular innervation.; Pflugers Arch, 475: 1265-1281 |
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GSE228719 |
| Song, Michael et al. (2019) Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes.; Nat Genet, 51: 1252-1262 |
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GSE113482 |
| Song, Min-Ae et al. (2020) Effects of Electronic Cigarette Constituents on the Human Lung: A Pilot Clinical Trial.; Cancer Prev Res (Phila), 13: 145-152 |
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GSE138326 |
| Song, Moshi et al. (2015) Combined cardiomyocyte PKC? and PKC? gene deletion uncovers their central role in restraining developmental and reactive heart growth.; Sci Signal, 8: ra39 |
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GSE62689 |
| Song, Sang-Hoon et al. (2022) Striatal miR-183-5p inhibits methamphetamine-induced locomotion by regulating glucocorticoid receptor signaling.; Front Pharmacol, 13: 997701 |
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GSE211184 |
| Song, Shanshan et al. (2021) Activation of endothelial Wnt/β-catenin signaling by protective astrocytes repairs BBB damage in ischemic stroke.; Prog Neurobiol, 199: 101963 |
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GSE145839 |
| Song, Shanshan et al. (2022) Elevated microglial oxidative phosphorylation and phagocytosis stimulate post-stroke brain remodeling and cognitive function recovery in mice.; Commun Biol, 5: 35 |
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GSE175504 |
| Song, Shanshan et al. (2022) Microglial-oligodendrocyte interactions in myelination and neurological function recovery after traumatic brain injury.; J Neuroinflammation, 19: 246 |
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GSE199869 |
| Song, Shuang et al. (2021) OBF1 and Oct factors control the germinal center transcriptional program.; Blood, 137: 2920-2934 |
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GSE161840 GSE161838 |
| Song, Shujie et al. (2014) Gene silencing associated with SWI/SNF complex loss during NSCLC development.; Mol Cancer Res, 12: 560-70 |
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GSE54033 |
| Song, Sicheng et al. (2022) Postnatal Conditional Deletion ofBcl11bin Striatal Projection Neurons Mimics the Transcriptional Signature of Huntington's Disease.; Biomedicines, 10: [no pages] |
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GSE185476 |
| Song, Wei et al. (2022) Putative complement control protein CSMD3 dysfunction impairs synaptogenesis and induces neurodevelopmental disorders.; Brain Behav Immun, 102: 237-250 |
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GSE186561 |
| Song, Wilbur M et al. (2018) Humanized TREM2 mice reveal microglia-intrinsic and -extrinsic effects of R47H polymorphism.; J Exp Med, 215: 745-760 |
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GSE108595 |
| Södersten, Erik et al. (2014) Dopamine signaling leads to loss of Polycomb repression and aberrant gene activation in experimental parkinsonism.; PLoS Genet, 10: e1004574 |
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GSE60701 |
| Södersten, Erik et al. (2018) A comprehensive map coupling histone modifications with gene regulation in adult dopaminergic and serotonergic neurons.; Nat Commun, 9: 1226 |
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GSE107655 |