List of all 21,864 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Prakasam, Gopinath et al. (2024) Comparative genomics incorporating translocation renal cell carcinoma mouse model reveals molecular mechanisms of tumorigenesis.; J Clin Invest, 134: [no pages] |
|
GSE252047 |
| Prakasam, Ramachandran et al. (2025) Autism- and intellectual disability-associated MYT1L mutation alters human cortical interneuron differentiation, maturation, and physiology.; Stem Cell Reports, 20: 102421 |
|
GSE244189 |
| Pramparo, Tiziano et al. (2011) Global developmental gene expression and pathway analysis of normal brain development and mouse models of human neuronal migration defects.; PLoS Genet, 7: e1001331 |
|
GSE35366 |
| Pramparo, Tiziano et al. (2015) Prediction of autism by translation and immune/inflammation coexpressed genes in toddlers from pediatric community practices.; JAMA Psychiatry, 72: 386-94 |
|
GSE42133 |
| Pranty, Abida Islam et al. (2023) Free Bilirubin Induces Neuro-Inflammation in an Induced Pluripotent Stem Cell-Derived Cortical Organoid Model of Crigler-Najjar Syndrome.; Cells, 12: [no pages] |
|
GSE243133 |
| Prasad, Mahadesh A J et al. (2015) Ebf1 heterozygosity results in increased DNA damage in pro-B cells and their synergistic transformation by Pax5 haploinsufficiency.; Blood, 125: 4052-9 |
|
GSE67415 |
| Prat, Aleix et al. (2014) Research-based PAM50 subtype predictor identifies higher responses and improved survival outcomes in HER2-positive breast cancer in the NOAH study.; Clin Cancer Res, 20: 511-21 |
|
GSE50948 |
| Pratap, Uday P et al. (2023) Preclinical Development of Brain Permeable ERβ Agonist for the Treatment of Glioblastoma.; Mol Cancer Ther, 22: 1248-1260 |
|
GSE226765 |
| Pratt, Arthur G et al. (2012) A CD4 T cell gene signature for early rheumatoid arthritis implicates interleukin 6-mediated STAT3 signalling, particularly in anti-citrullinated peptide antibody-negative disease.; Ann Rheum Dis, [no vol.]: [no pages] |
|
GSE20098 |
| Pratt, Karishma J B et al. (2022) Loss of neuronal Tet2 enhances hippocampal-dependent cognitive function.; Cell Rep, 41: 111612 |
|
GSE171295.1 GSE171295.2 |
| Preciado, Diego et al. (2013) NTHi induction of Cxcl2 and middle ear mucosal metaplasia in mice.; Laryngoscope, 123: E66-71 |
|
GSE40087 |
| Precious, S V et al. (2016) FoxP1 marks medium spiny neurons from precursors to maturity and is required for their differentiation.; Exp Neurol, 282: 9-18 |
|
GSE55497 |
| Preidis, Geoffrey A et al. (2020) Coagulopathy in Malnourished Mice Is Sexually Dimorphic and Regulated by Nutrient-Sensing Nuclear Receptors.; Hepatol Commun, 4: 1835-1850 |
|
GSE156856 |
| Preininger, Marcela et al. (2013) Blood-informative transcripts define nine common axes of peripheral blood gene expression.; PLoS Genet, 9: e1003362 |
|
GSE35846 |
| Preka, Efthalia et al. (2024) Rapid and robust isolation of microglia and vascular cells from brain subregions for integrative single-cell analyses.; Heliyon, 10: e35838 |
|
GSE270158 |
| Prensner, John R et al. (2011) Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression.; Nat Biotechnol, 29: 742-9 |
|
GSE25183 |
| Prentice, Leah M et al. (2011) The testosterone-dependent and independent transcriptional networks in the hypothalamus of Gpr54 and Kiss1 knockout male mice are not fully equivalent.; BMC Genomics, 12: 209 |
|
GSE28383 |
| Prenzel, Tanja et al. (2011) Estrogen-dependent gene transcription in human breast cancer cells relies upon proteasome-dependent monoubiquitination of histone H2B.; Cancer Res, 71: 5739-53 |
|
GSE30931 |
| Prenzel, Tanja et al. (2012) Cohesin is required for expression of the estrogen receptor-alpha (ESR1) gene.; Epigenetics Chromatin, 5: 13 |
|
GSE38252 |
| Prescott, Sara L et al. (2015) Enhancer divergence and cis-regulatory evolution in the human and chimp neural crest.; Cell, 163: 68-83 |
|
GSE70751 |
| Presley, Lianne et al. (2026) TMPRSS2 inhibitors with broad-spectrum efficacy against SARS-CoV-2 (JN.1) and influenza A (H1N1) viruses protect mice from influenza A infection.; Emerg Microbes Infect, 15: 2616944 |
|
GSE313871 |
| Pressinotti, Nicole Chui et al. (2009) Differential expression of apoptotic genes PDIA3 and MAP3K5 distinguishes between low- and high-risk prostate cancer.; Mol Cancer, 8: 130 |
|
GSE15484 |
| Preston, Simon P et al. (2023) A necroptosis-independent function of RIPK3 promotes immune dysfunction and prevents control of chronic LCMV infection.; Cell Death Dis, 14: 123 |
|
GSE224066 |
| Pretorius, Lynette et al. (2009) Reduced phosphoinositide 3-kinase (p110alpha) activation increases the susceptibility to atrial fibrillation.; Am J Pathol, 175: 998-1009 |
|
GSE12420 |
| Price, Alkes L et al. (2008) Effects of cis and trans genetic ancestry on gene expression in African Americans.; PLoS Genet, 4: e1000294 |
|
GSE10824 |
| Prichard, Ashley et al. (2023) Brain rhythms control microglial response and cytokine expression via NF-κB signaling.; Sci Adv, 9: eadf5672 |
|
GSE225842 GSE226822 |
| Pridans, Clare et al. (2018) Pleiotropic Impacts of Macrophage and Microglial Deficiency on Development in Rats with Targeted Mutation of theCsf1rLocus.; J Immunol, 201: 2683-2699 |
|
GSE100696 |
| Priego, Neibla et al. (2025) TIMP1 Mediates Astrocyte-Dependent Local Immunosuppression in Brain Metastasis Acting on Infiltrating CD8+ T Cells.; Cancer Discov, 15: 179-201 |
|
GSE228364 |
| Prigione, Alessandro et al. (2014) HIF1α modulates cell fate reprogramming through early glycolytic shift and upregulation of PDK1-3 and PKM2.; Stem Cells, 32: 364-76 |
|
GSE37709 |
| Prilutsky, Daria et al. (2015) Gene expression analysis in Fmr1KO mice identifies an immunological signature in brain tissue and mGluR5-related signaling in primary neuronal cultures.; Mol Autism, 6: 66 |
|
GSE71034 |
| Principe, Daniel R et al. (2022) XP-524 is a dual-BET/EP300 inhibitor that represses oncogenic KRAS and potentiates immune checkpoint inhibition in pancreatic cancer.; Proc Natl Acad Sci U S A, 119: [no pages] |
|
GSE192903 |
| Prinzen, Claudia et al. (2009) Differential gene expression in ADAM10 and mutant ADAM10 transgenic mice.; BMC Genomics, 10: 66 |
|
GSE10908 |
| Privitera, Lucia et al. (2020) Experience Recruits MSK1 to Expand the Dynamic Range of Synapses and Enhance Cognition.; J Neurosci, 40: 4644-4660 |
|
GSE149210 |
| Privitera, Mattia et al. (2024) Noradrenaline release from the locus coeruleus shapes stress-induced hippocampal gene expression.; Elife, 12: [no pages] |
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GSE218313.1 GSE218315.1 GSE218313.2 GSE218315.2 GSE218313.3 GSE218313.4 |
| Procida, Tara et al. (2021) JAZF1, A Novel p400/TIP60/NuA4 Complex Member, Regulates H2A.Z Acetylation at Regulatory Regions.; Int J Mol Sci, 22: [no pages] |
|
GSE163214 |
| Prodromidou, Kanella et al. (2020) MicroRNA-934 is a novel primate-specific small non-coding RNA with neurogenic function during early development.; Elife, 9: [no pages] |
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GSE119760 GSE101548 |
| Profaci, Caterina P et al. (2024) Microglia are not necessary for maintenance of blood-brain barrier properties in health, but PLX5622 alters brain endothelial cholesterol metabolism.; Neuron, 112: 2910-2921.e7 |
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GSE267594 GSE267590 GSE267592 |
| Progatzky, Fränze et al. (2021) Regulation of intestinal immunity and tissue repair by enteric glia.; Nature, 599: 125-130 |
|
GSE182708 |
| Prohens, Llucia et al. (2025) Association of astrocyte-specific gene expression in the dorsolateral prefrontal cortex with clozapine treatment in schizophrenia.; Transl Psychiatry, 15: 458 |
|
GSE244782 |
| Pronk, Cornelis J H et al. (2007) Elucidation of the phenotypic, functional, and molecular topography of a myeloerythroid progenitor cell hierarchy.; Cell Stem Cell, 1: 428-42 |
|
GSE8407 |
| Prost, Gaëlle et al. (2016) The putative tumor suppressor gene EphA7 is a novel BMI-1 target.; Oncotarget, 7: 58203-58217 |
|
GSE70451 |
| Prots, Iryna et al. (2011) Analysis of the transcriptional program of developing induced regulatory T cells.; PLoS One, 6: e16913 |
|
GSE24634 |
| Protzmann, Jil et al. (2025) PDGFRα inhibition reduces myofibroblast expansion in the fibrotic rim and enhances recovery after ischemic stroke.; J Clin Invest, 135: [no pages] |
|
GSE137534 |
| Proud, David et al. (2008) Gene expression profiles during in vivo human rhinovirus infection: insights into the host response.; Am J Respir Crit Care Med, 178: 962-8 |
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GSE11348 |
| Provenzano, Giovanni et al. (2016) Comparative Gene Expression Analysis of Two Mouse Models of Autism: Transcriptome Profiling of the BTBR and En2 (-/-) Hippocampus.; Front Neurosci, 10: 396 |
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GSE81501 GSE81502 |
| Provençal, Nadine et al. (2020) Glucocorticoid exposure during hippocampal neurogenesis primes future stress response by inducing changes in DNA methylation.; Proc Natl Acad Sci U S A, 117: 23280-23285 |
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GSE119842 |
| Prudencio, Mercedes et al. (2015) Distinct brain transcriptome profiles in C9orf72-associated and sporadic ALS.; Nat Neurosci, 18: 1175-82 |
|
GSE67196 |
| Prueitt, Robyn L et al. (2016) An Immune-Inflammation Gene Expression Signature in Prostate Tumors of Smokers.; Cancer Res, 76: 1055-1065 |
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GSE68135 GSE68136 |
| Pruis, M G M et al. (2014) Maternal western diet primes non-alcoholic fatty liver disease in adult mouse offspring.; Acta Physiol (Oxf), 210: 215-27 |
|
GSE44901 |
| Prukop, Thomas et al. (2014) Progesterone antagonist therapy in a Pelizaeus-Merzbacher mouse model.; Am J Hum Genet, 94: 533-46 |
|
GSE55315 |
| Prusty, Archana Bairavasundaram et al. (2024) RNA helicase IGHMBP2 regulates THO complex to ensure cellular mRNA homeostasis.; Cell Rep, 43: 113802 |
|
GSE237412 |
| Pruunsild, Priit et al. (2023) Expression of the primate-specific LINC00473 RNA in mouse neurons promotes excitability and CREB-regulated transcription.; J Biol Chem, 299: 104671 |
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GSE201643 |
| Pruvost, Mathilde et al. (2023) The stability of the myelinating oligodendrocyte transcriptome is regulated by the nuclear lamina.; Cell Rep, 42: 112848 |
|
GSE222574 |
| Pryce, Benjamin R et al. (2024) Muscle inflammation is regulated by NF-κB from multiple cells to control distinct states of wasting in cancer cachexia.; Cell Rep, 43: 114925 |
|
GSE245314 |
| Pryce, Kerri D et al. (2023) Oxycodone withdrawal induces HDAC1/HDAC2-dependent transcriptional maladaptations in the reward pathway in a mouse model of peripheral nerve injury.; Nat Neurosci, 26: 1229-1244 |
|
GSE223541 |
| Przybycien-Szymanska, Magdalena M et al. (2014) Parental binge alcohol abuse alters F1 generation hypothalamic gene expression in the absence of direct fetal alcohol exposure.; PLoS One, 9: e89320 |
|
GSE53028 |
| Pré, Deborah et al. (2022) Development of a platform to investigate long-term potentiation in human iPSC-derived neuronal networks.; Stem Cell Reports, 17: 2141-2155 |
|
GSE193191 |
| Ptasinska, A et al. (2012) Depletion of RUNX1/ETO in t(8;21) AML cells leads to genome-wide changes in chromatin structure and transcription factor binding.; Leukemia, 26: 1829-41 |
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GSE34594 GSE29223 |
| Ptasinska, Anetta et al. (2014) Identification of a dynamic core transcriptional network in t(8;21) AML that regulates differentiation block and self-renewal.; Cell Rep, 8: 1974-1988 |
|
GSE54478 |
| Pucheu-Haston, Cherie M et al. (2010) Biomarkers of acute respiratory allergen exposure: screening for sensitization potential.; Toxicol Appl Pharmacol, 244: 144-55 |
|
GSE18707 |
| Puhakka, Noora et al. (2017) Chronically dysregulated NOTCH1 interactome in the dentate gyrus after traumatic brain injury.; PLoS One, 12: e0172521 |
|
GSE86579 |
| Puhakka, Noora et al. (2022) Transfer RNA-Derived Fragments and isomiRs Are Novel Components of Chronic TBI-Induced Neuropathology.; Biomedicines, 10: [no pages] |
|
GSE192979 |
| Puighermanal, Emma et al. (2017) Ribosomal Protein S6 Phosphorylation Is Involved in Novelty-Induced Locomotion, Synaptic Plasticity and mRNA Translation.; Front Mol Neurosci, 10: 419 |
|
GSE98029 |
| Puissant, Alexandre et al. (2013) Targeting MYCN in neuroblastoma by BET bromodomain inhibition.; Cancer Discov, 3: 308-23 |
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GSE43392 |
| Puissant, Alexandre et al. (2014) SYK is a critical regulator of FLT3 in acute myeloid leukemia.; Cancer Cell, 25: 226-42 |
|
GSE54065 |
| Pujadas, Elisabet et al. (2021) Molecular Profiling of Coronavirus Disease 2019 (COVID-19) Autopsies Uncovers Novel Disease Mechanisms.; Am J Pathol, [no vol.]: [no pages] |
|
GSE182297 |
| Pulice, John L et al. (2025) Amplified dosage of the NKX2-1 lineage transcription factor controls its oncogenic role in lung adenocarcinoma.; Mol Cell, 85: 1311-1329.e16 |
|
GSE229541 |
| Pulido, Robert S et al. (2020) Neuronal Activity Regulates Blood-Brain Barrier Efflux Transport through Endothelial Circadian Genes.; Neuron, 108: 937-952.e7 |
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GSE156689.1 GSE156689.2 |
| Pulido-Salgado, Marta et al. (2017) Myeloid C/EBP? deficiency reshapes microglial gene expression and is protective in experimental autoimmune encephalomyelitis.; J Neuroinflammation, 14: 54 |
|
GSE90046 |
| Pulver-Kaste, Renee A et al. (2006) Ca2+ source-dependent transcription of CRE-containing genes in vascular smooth muscle.; Am J Physiol Heart Circ Physiol, 291: H97-105 |
|
GSE2883 |
| Pun, Renju et al. (2025) BubR1 Insufficiency Drives Transcriptomic Alterations and Pathology Associated With Cardiac Aging and Heart Failure.; Aging Cell, 24: e70160 |
|
GSE277997 |
| Punapart, Marite et al. (2014) Effect of chronic valproic Acid treatment on hepatic gene expression profile in wfs1 knockout mouse.; PPAR Res, 2014: 349525 |
|
GSE55143 |
| Pundhir, Sachin et al. (2018) Enhancer and Transcription Factor Dynamics during Myeloid Differentiation Reveal an Early Differentiation Block in Cebpa null Progenitors.; Cell Rep, 23: 2744-2757 |
|
GSE89767 |
| Punt, A Mattijs et al. (2022) Molecular and behavioral consequences of Ube3a gene overdosage in mice.; JCI Insight, 7: [no pages] |
|
GSE205128 |
| Punyawatthananukool, Siwakorn et al. (2024) Prostaglandin E2-EP2/EP4 signaling induces immunosuppression in human cancer by impairing bioenergetics and ribosome biogenesis in immune cells.; Nat Commun, 15: 9464 |
|
GSE242271 |
| Punzi, Simona et al. (2019) WDR5 inhibition halts metastasis dissemination by repressing the mesenchymal phenotype of breast cancer cells.; Breast Cancer Res, 21: 123 |
|
GSE113288 |
| Purcell, Maggie et al. (2014) Gene expression profiling of replicative and induced senescence.; Cell Cycle, 13: 3927-37 |
|
GSE60340 |
| Puri, Deepika et al. (2021) Foxd3 controls heterochromatin-mediated repression of repeat elements and 2-cell state transcription.; EMBO Rep, 22: e53180 |
|
GSE173602 |
| Purnama, Agung et al. (2013) Gene expression profile of mouse fibroblasts exposed to a biodegradable iron alloy for stents.; Acta Biomater, 9: 8746-53 |
|
GSE22794 |
| Purohit, Kush et al. (2018) Pharmacogenetic Manipulation of the Nucleus Accumbens Alters Binge-Like Alcohol Drinking in Mice.; Alcohol Clin Exp Res, 42: 879-888 |
|
GSE133115 |
| Purushotham, Aparna et al. (2009) Hepatocyte-specific deletion of SIRT1 alters fatty acid metabolism and results in hepatic steatosis and inflammation.; Cell Metab, 9: 327-38 |
|
GSE14921 |
| Purzner, James et al. (2024) Ezh2 Delays Activation of Differentiation Genes During Normal Cerebellar Granule Neuron Development and in Medulloblastoma.; bioRxiv, [no vol.]: [no pages] |
|
GSE279346 |
| Putaala, H et al. (2010) Analysis of the human intestinal epithelial cell transcriptional response to Lactobacillus acidophilus, Lactobacillus salivarius, Bifidobacterium lactis and Escherichia coli.; Benef Microbes, 1: 283-95 |
|
GSE15636 |
| Putman, A H et al. (2016) Identification of quantitative trait loci and candidate genes for an anxiolytic-like response to ethanol in BXD recombinant inbred strains.; Genes Brain Behav, 15: 367-81 |
|
GSE28515 |
| Putman, Jennifer N et al. (2024) Pre- and Postsynaptic MEF2C Promotes Experience-Dependent, Input-Specific Development of Cortical Layer 4 to Layer 2/3 Excitatory Synapses and Regulates Activity-Dependent Expression of Synaptic Cell Adhesion Molecules.; J Neurosci, 44: [no pages] |
|
GSE253629 |
| Putoczki, Tracy L et al. (2013) Interleukin-11 is the dominant IL-6 family cytokine during gastrointestinal tumorigenesis and can be targeted therapeutically.; Cancer Cell, 24: 257-71 |
|
GSE43800 |