List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Purushotham, Aparna et al. (2009) Hepatocyte-specific deletion of SIRT1 alters fatty acid metabolism and results in hepatic steatosis and inflammation.; Cell Metab, 9: 327-38 |
|
GSE14921 |
| Purzner, James et al. (2024) Ezh2 Delays Activation of Differentiation Genes During Normal Cerebellar Granule Neuron Development and in Medulloblastoma.; bioRxiv, [no vol.]: [no pages] |
|
GSE279346 |
| Putaala, H et al. (2010) Analysis of the human intestinal epithelial cell transcriptional response to Lactobacillus acidophilus, Lactobacillus salivarius, Bifidobacterium lactis and Escherichia coli.; Benef Microbes, 1: 283-95 |
|
GSE15636 |
| Putman, A H et al. (2016) Identification of quantitative trait loci and candidate genes for an anxiolytic-like response to ethanol in BXD recombinant inbred strains.; Genes Brain Behav, 15: 367-81 |
|
GSE28515 |
| Putman, Jennifer N et al. (2024) Pre- and Postsynaptic MEF2C Promotes Experience-Dependent, Input-Specific Development of Cortical Layer 4 to Layer 2/3 Excitatory Synapses and Regulates Activity-Dependent Expression of Synaptic Cell Adhesion Molecules.; J Neurosci, 44: [no pages] |
|
GSE253629 |
| Putoczki, Tracy L et al. (2013) Interleukin-11 is the dominant IL-6 family cytokine during gastrointestinal tumorigenesis and can be targeted therapeutically.; Cancer Cell, 24: 257-71 |
|
GSE43800 |
| Putzbach, William et al. (2017) Many si/shRNAs can kill cancer cells by targeting multiple survival genes through an off-target mechanism.; Elife, 6: [no pages] |
|
GSE101234 |
| Puyang, Xiaoling et al. (2018) Discovery of Selective Estrogen Receptor Covalent Antagonists for the Treatment of ERαWTand ERαMUTBreast Cancer.; Cancer Discov, 8: 1176-1193 |
|
GSE115609 |
| Pybus, Alyssa F et al. (2024) Profiling the neuroimmune cascade in 3xTg-AD mice exposed to successive mild traumatic brain injuries.; J Neuroinflammation, 21: 156 |
|
GSE226838 |
| Pyeon, Dohun et al. (2007) Fundamental differences in cell cycle deregulation in human papillomavirus-positive and human papillomavirus-negative head/neck and cervical cancers.; Cancer Res, 67: 4605-19 |
|
GSE6791 |
| Pyonteck, Stephanie M et al. (2013) CSF-1R inhibition alters macrophage polarization and blocks glioma progression.; Nat Med, [no vol.]: [no pages] |
|
GSE37475 |
| Qabrati, Xhem et al. (2023) Transgene-free direct conversion of murine fibroblasts into functional muscle stem cells.; NPJ Regen Med, 8: 43 |
|
GSE208059 |
| Qi, Hank H et al. (2010) Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofacial development.; Nature, 466: 503-7 |
|
GSE21555 |
| Qi, Jianfei et al. (2010) Siah2-dependent concerted activity of HIF and FoxA2 regulates formation of neuroendocrine phenotype and neuroendocrine prostate tumors.; Cancer Cell, 18: 23-38 |
|
GSE18478 |
| Qi, Linlin et al. (2023) VEGFR-3 signaling restrains the neuron-macrophage crosstalk during neurotropic viral infection.; Cell Rep, 42: 112489 |
|
GSE228931 |
| Qi, Ruoyao et al. (2024) Therapeutic vaccine-induced plasma cell differentiation is defective in the presence of persistently high HBsAg levels.; J Hepatol, 80: 714-729 |
|
GSE230861 |
| Qi, Wei et al. (2012) Selective inhibition of Ezh2 by a small molecule inhibitor blocks tumor cells proliferation.; Proc Natl Acad Sci U S A, 109: 21360-5 |
|
GSE41315 |
| Qi, Wenqing et al. (2022) Genomic profiling identifies genes and pathways dysregulated by HEY1-NCOA2 fusion and shines a light on mesenchymal chondrosarcoma tumorigenesis.; J Pathol, 257: 579-592 |
|
GSE196002 |
| Qi, Xiaopeng et al. (2013) Antagonistic regulation by the transcription factors C/EBP? and MITF specifies basophil and mast cell fates.; Immunity, 39: 97-110 |
|
GSE41596 |
| Qi, Yue et al. (2022) Endothelial c-Myc knockout enhances diet-induced liver inflammation and fibrosis.; FASEB J, 36: e22077 |
|
GSE176573 |
| Qian, Feng et al. (2013) Identification of genes critical for resistance to infection by West Nile virus using RNA-Seq analysis.; Viruses, 5: 1664-81 |
|
GSE40718 |
| Qian, Feng et al. (2013) Impaired toll-like receptor 3-mediated immune responses from macrophages of patients chronically infected with hepatitis C virus.; Clin Vaccine Immunol, 20: 146-55 |
|
GSE40812 |
| Qian, Feng et al. (2014) Immune markers associated with host susceptibility to infection with West Nile virus.; Viral Immunol, 27: 39-47 |
|
GSE43190 |
| Qian, Hao et al. (2020) Reversing a model of Parkinson's disease with in situ converted nigral neurons.; Nature, 582: 550-556 |
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GSE142250 |
| Qian, Jiawen et al. (2018) TLR2 Promotes Glioma Immune Evasion by Downregulating MHC Class II Molecules in Microglia.; Cancer Immunol Res, 6: 1220-1233 |
|
GSE109297 |
| Qian, Jing et al. (2018) Transcriptomic Study Reveals Recovery of Impaired Astrocytes Contribute to Neuroprotective Effects of Danhong Injection Against Cerebral Ischemia/Reperfusion-Induced Injury.; Front Pharmacol, 9: 250 |
|
GSE106680 |
| Qian, Jun et al. (2005) Gene expression profiling of the bone marrow mononuclear cells from patients with myelodysplastic syndrome.; Oncol Rep, 14: 1189-97 |
|
GSE16236 |
| Qian, Junming et al. (2023) Multiplex epigenome editing ofMECP2to rescue Rett syndrome neurons.; Sci Transl Med, 15: eadd4666 |
|
GSE214548 |
| Qian, Kaiqiang et al. (2022) Manganese enhances macrophage defense against Mycobacterium tuberculosis via the STING-TNF signaling pathway.; Int Immunopharmacol, 113: 109471 |
|
GSE211666 |
| Qian, Liangyue et al. (2019) Suppression of ILC2 differentiation from committed T cell precursors by E protein transcription factors.; J Exp Med, 216: 884-899 |
|
GSE111518 |
| Qian, Mollie F et al. (2023) HNF1α maintains pancreatic α and β cell functions in primary human islets.; JCI Insight, 8: [no pages] |
|
GSE246229 |
| Qian, Qingwen et al. (2024) Obesity disrupts the pituitary-hepatic UPR communication leading to NAFLD progression.; Cell Metab, 36: 1550-1565.e9 |
|
GSE263187 GSE263188 |
| Qian, Sheng Hu et al. (2022) Evolution and function of developmentally dynamic pseudogenes in mammals.; Genome Biol, 23: 235 |
|
GSE176018 |
| Qian, Tongcheng et al. (2017) Directed differentiation of human pluripotent stem cells to blood-brain barrier endothelial cells.; Sci Adv, 3: e1701679 |
|
GSE97575 |
| Qian, Xuemin et al. (2015) RNA-sequencing studies identify genes differentially regulated during inflammation-driven lung tumorigenesis and targeted by chemopreventive agents.; Inflamm Res, 64: 343-61 |
|
GSE64027 |
| Qian, Xuyu et al. (2016) Brain-Region-Specific Organoids Using Mini-bioreactors for Modeling ZIKV Exposure.; Cell, 165: 1238-54 |
|
GSE80073 |
| Qian, Yiming et al. (2025) Microglial TIA1-mediated stress granules promote neuroinflammation and aggravate neuron loss in mice after ischemic stroke by inhibiting IGF2 signaling.; Theranostics, 16: 2627-2648 |
|
GSE297158 |
| Qian, Yuan et al. (2021) ZEB1 promotes pathogenic Th1 and Th17 cell differentiation in multiple sclerosis.; Cell Rep, 36: 109602 |
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GSE179832.2 GSE179832.1 |
| Qiang, Lihua et al. (2023) A mycobacterial effector promotes ferroptosis-dependent pathogenicity and dissemination.; Nat Commun, 14: 1430 |
|
GSE199069 |
| Qiao, Dan et al. (2025) Implications of prenatal exposure to hyperandrogen for hippocampal neurodevelopment and autism-like behavior in offspring.; Prog Neuropsychopharmacol Biol Psychiatry, 136: 111219 |
|
GSE246534 |
| Qiao, Sen et al. (2023) Intra-pituitary follicle-stimulating hormone signaling regulates hepatic lipid metabolism in mice.; Nat Commun, 14: 1098 |
|
GSE216096 |
| Qiao, Wenhui et al. (2023) Trem2 H157Y increases soluble TREM2 production and reduces amyloid pathology.; Mol Neurodegener, 18: 8 |
|
GSE212618 |
| Qiao, Xingwen et al. (2007) Gene expression profiling in a mouse model of infantile neuronal ceroid lipofuscinosis reveals upregulation of immediate early genes and mediators of the inflammatory response.; BMC Neurosci, 8: 95 |
|
GSE6678 |
| Qiao, Yunbo et al. (2014) AF9 promotes hESC neural differentiation through recruiting TET2 to neurodevelopmental gene loci for methylcytosine hydroxylation.; Cell Discov, 1: 15017 |
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GSE68396 |
| Qiao, Yunbo et al. (2015) Dual roles of histone H3 lysine 9 acetylation in human embryonic stem cell pluripotency and neural differentiation.; J Biol Chem, 290: 2508-20 |
|
GSE66779 |
| Qin, Dongdong et al. (2023) Phase-separated CCER1 coordinates the histone-to-protamine transition and male fertility.; Nat Commun, 14: 8209 |
|
GSE212733.2 |
| Qin, Han et al. (2012) Transcriptional analysis of pluripotency reveals the Hippo pathway as a barrier to reprogramming.; Hum Mol Genet, 21: 2054-67 |
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GSE35416 |
| Qin, Jie et al. (2026) Myeloid PD-1 Regulates Astrocyte Development and Leads to Active Behaviours.; Cell Prolif, 59: e70082 |
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GSE277873 |
| Qin, Jinzhong et al. (2012) The polycomb group protein L3mbtl2 assembles an atypical PRC1-family complex that is essential in pluripotent stem cells and early development.; Cell Stem Cell, 11: 319-32 |
|
GSE38801 |
| Qin, Jun et al. (2013) COUP-TFII inhibits TGF-?-induced growth barrier to promote prostate tumorigenesis.; Nature, 493: 236-40 |
|
GSE33182 |
| Qin, Lin et al. (2021) DNMT3L promotes neural differentiation by enhancing STAT1 and STAT3 phosphorylation independent of DNA methylation.; Prog Neurobiol, 201: 102028 |
|
GSE157080 |
| Qin, Luye et al. (2018) Social deficits in Shank3-deficient mouse models of autism are rescued by histone deacetylase (HDAC) inhibition.; Nat Neurosci, 21: 564-575 |
|
GSE109328 |
| Qin, Luye et al. (2021) Deficiency of autism risk factor ASH1L in prefrontal cortex induces epigenetic aberrations and seizures.; Nat Commun, 12: 6589 |
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GSE181819 |
| Qin, Qizhi et al. (2023) CNTNAP4 signaling regulates osteosarcoma disease progression.; NPJ Precis Oncol, 7: 2 |
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GSE210373 |
| Qin, Shangyao et al. (2022) Topoisomerase IIA in adult NSCs regulates SVZ neurogenesis by transcriptional activation of Usp37.; Nucleic Acids Res, [no vol.]: [no pages] |
|
GSE192398 |
| Qin, Tingting et al. (2022) ATRX loss in glioma results in dysregulation of cell-cycle phase transition and ATM inhibitor radio-sensitization.; Cell Rep, 38: 110216 |
|
GSE178113 |
| Qin, Weiping et al. (2013) The central nervous system (CNS)-independent anti-bone-resorptive activity of muscle contraction and the underlying molecular and cellular signatures.; J Biol Chem, 288: 13511-21 |
|
GSE30301 |
| Qin, Yan et al. (2018) A Milieu Molecule for TGF-β Required for Microglia Function in the Nervous System.; Cell, 174: 156-171.e16 |
|
GSE112604.1 |
| Qin, Yufeng et al. (2018) An obesity-associated gut microbiome reprograms the intestinal epigenome and leads to altered colonic gene expression.; Genome Biol, 19: 7 |
|
GSE99327 |
| Qin, Zhen-Qi et al. (2019) Heterozygous p53-R280T Mutation Enhances the Oncogenicity of NPC Cells Through Activating PI3K-Akt Signaling Pathway.; Front Oncol, 10: 104 |
|
GSE130398 |
| Qin, Zixi et al. (2023) ActivatedKRASreprograms neural progenitor cells to glioma stem cell‑like phenotype.; Int J Oncol, 63: [no pages] |
|
GSE228903 |
| Qiu, J et al. (2016) Decreased Npas4 and Arc mRNA Levels in the Hippocampus of Aged Memory-Impaired Wild-Type But Not Memory Preserved 11?-HSD1 Deficient Mice.; J Neuroendocrinol, 28: [no pages] |
|
GSE68515 |
| Qiu, Jing et al. (2011) Transcriptomic analysis of the osmotic and reproductive remodeling of the female rat supraoptic nucleus.; Endocrinology, 152: 3483-91 |
|
GSE30733 |
| Qiu, Na et al. (2023) CD8 T cell-mediated depletion of HBV surface-antigen-expressing, bilineal-differentiated liver carcinoma cells generates highly aggressive escape variants.; Oncoimmunology, 12: 2215096 |
|
GSE215059 |
| Qiu, Qiang et al. (2021) Acquisition of innate odor preference depends on spontaneous and experiential activities during critical period.; Elife, 10: [no pages] |
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GSE166457.2 GSE166457.1 |
| Qiu, Weimin et al. (2010) Tumor necrosis factor receptor superfamily member 19 (TNFRSF19) regulates differentiation fate of human mesenchymal (stromal) stem cells through canonical Wnt signaling and C/EBP.; J Biol Chem, 285: 14438-49 |
|
GSE16186 |
| Qiu, Xiaoming et al. (2024) PLGA/BK microspheres targeting the bradykinin signaling pathway as a therapeutic strategy to delay intervertebral disc degeneration.; Commun Biol, 7: 1540 |
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GSE277600 |
| Qiu, Xintao et al. (2022) MYC drives aggressive prostate cancer by disrupting transcriptional pause release at androgen receptor targets.; Nat Commun, 13: 2559 |
|
GSE163143 |
| Qiu, Yiguo et al. (2023) Definition of the contribution of an Osteopontin-producing CD11c+microglial subset to Alzheimer's disease.; Proc Natl Acad Sci U S A, 120: e2218915120 |
|
GSE191118 |
| Qiu, Yijian et al. (2024) The unique catalytic properties of PSAT1 mediate metabolic adaptation to glutamine blockade.; Nat Metab, 6: 1529-1548 |
|
GSE263696 |
| Qiu, Yunguang et al. (2024) Systematic characterization of multi-omics landscape between gut microbial metabolites and GPCRome in Alzheimer's disease.; Cell Rep, 43: 114128 |
|
GSE295280 |
| Qiu, Zhixin et al. (2016) Hepatocellular carcinoma cell lines retain the genomic and transcriptomic landscapes of primary human cancers.; Sci Rep, 6: 27411 |
|
GSE78236 |
| Qiu, Zhixin et al. (2019) A Pharmacogenomic Landscape in Human Liver Cancers.; Cancer Cell, 36: 179-193.e11 |
|
GSE97098 |
| Qu, Fangfei et al. (2023) Crosstalk between small-cell lung cancer cells and astrocytes mimics brain development to promote brain metastasis.; Nat Cell Biol, 25: 1506-1519 |
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GSE178738 GSE178732 GSE179032 GSE178736 |
| Qu, Juan et al. (2013) The Time Course of Gene Expression during Reactive Gliosis in the Optic Nerve.; PLoS One, 8: e67094 |
|
GSE40857 |
| Qu, Qi et al. (2022) Functional investigation of SLC1A2 variants associated with epilepsy.; Cell Death Dis, 13: 1063 |
|
GSE213652 |
| Qu, Su et al. (2013) Rapid gene expression changes in peripheral blood lymphocytes upon practice of a comprehensive yoga program.; PLoS One, 8: e61910 |
|
GSE44777 |
| Qu, Wenhui et al. (2023) Deletion of Small GTPase H-Ras Rescues Memory Deficits and Reduces Amyloid Plaque-Associated Dendritic Spine Loss in Transgenic Alzheimer's Mice.; Mol Neurobiol, 60: 495-511 |
|
GSE180103 |
| Qu, Wenhui et al. (2024) Xenografted human iPSC-derived neurons with the familial Alzheimer's disease APPV717Imutation reveal dysregulated transcriptome signatures linked to synaptic function and implicate LINGO2 as a disease signaling mediator.; Acta Neuropathol, 147: 107 |
|
GSE231639 |
| Qu, Wenrui et al. (2020) CPEB3 regulates neuron-specific alternative splicing and involves neurogenesis gene expression.; Aging (Albany NY), 13: 2330-2347 |
|
GSE153166 |
| Qu, Wenzheng et al. (2022) m6A Modification Involves in Enriched Environment-Induced Neurogenesis and Cognition Enhancement.; Front Cell Dev Biol, 10: 903179 |
|
GSE197754 |
| Qu, Xiaolin et al. (2021) The Alteration of M6A-Tagged Transcript Profiles in the Retina of Rats After Traumatic Optic Neuropathy.; Front Genet, 12: 628841 |
|
GSE165520 |
| Qu, Xuan et al. (2025) Charting the regulatory landscape of TP53 on transposable elements in cancer.; Genome Res, 35: 1456-1471 |
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GSE262053.1 GSE262053.2 |
| Qu, Yao et al. (2024) Neuroinflammation signatures in dorsal root ganglia following chronic constriction injury.; Heliyon, 10: e31481 |
|
GSE212311 |
| Qu, Yinghua et al. (2023) FEZ1 participates in human embryonic brain development by modulating neuronal progenitor subpopulation specification and migrations.; iScience, 26: 108497 |
|
GSE218845 |
| Qu, Yinyin et al. (2020) lncRNAs Are Involved in Sevoflurane Anesthesia-Related Brain Function Modulation through Affecting Mitochondrial Function and Aging Process.; Biomed Res Int, 2020: 8841511 |
|
GSE139220 |
| Qu, Zepeng et al. (2015) Transplantation of rat embryonic stem cell-derived retinal progenitor cells preserves the retinal structure and function in rat retinal degeneration.; Stem Cell Res Ther, 6: 219 |
|
GSE67213 |
| Qu, Zepeng et al. (2023) Stage-specific dynamic reorganization of genome topology shapes transcriptional neighborhoods in developing human retinal organoids.; Cell Rep, 42: 113543 |
|
GSE229682 |
| Quach, David H et al. (2013) A sympathetic neuron autonomous role for Egr3-mediated gene regulation in dendrite morphogenesis and target tissue innervation.; J Neurosci, 33: 4570-83 |
|
GSE41290 |
| Quagliarini, Fabiana et al. (2019) Cistromic Reprogramming of the Diurnal Glucocorticoid Hormone Response by High-Fat Diet.; Mol Cell, 76: 531-545.e5 |
|
GSE108688 |
| Qualls, Joseph E et al. (2010) Arginine usage in mycobacteria-infected macrophages depends on autocrine-paracrine cytokine signaling.; Sci Signal, 3: ra62 |
|
GSE22935 |
| Quan, Lili et al. (2025) HIV-1 Tat Protein Exposure Alters the Morphological Characteristics and Gene Expression in the Primary Mouse Cortex Endothelial Cells and Human Brain Microvascular Endothelial Cells.; Cell Mol Neurobiol, 46: 9 |
|
GSE307483 |
| Quante, Timo et al. (2012) Mutant p53 is a transcriptional co-factor that binds to G-rich regulatory regions of active genes and generates transcriptional plasticity.; Cell Cycle, 11: 3290-303 |
|
GSE35454 |