List of all 16,857 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Song, Wei et al. (2022) Putative complement control protein CSMD3 dysfunction impairs synaptogenesis and induces neurodevelopmental disorders.; Brain Behav Immun, 102: 237-250 |
|
GSE186561 |
| Song, Wilbur M et al. (2018) Humanized TREM2 mice reveal microglia-intrinsic and -extrinsic effects of R47H polymorphism.; J Exp Med, 215: 745-760 |
|
GSE108595 |
| Song, Xuewen et al. (2009) Systems biology of autosomal dominant polycystic kidney disease (ADPKD): computational identification of gene expression pathways and integrated regulatory networks.; Hum Mol Genet, 18: 2328-43 |
|
GSE7869 |
| Song, Yang et al. (2024) Biphasic regulation of epigenetic state by matrix stiffness during cell reprogramming.; Sci Adv, 10: eadk0639 |
|
GSE250068 |
| Song, Yuelin et al. (2019) Dynamic Enhancer DNA Methylation as Basis for Transcriptional and Cellular Heterogeneity of ESCs.; Mol Cell, 75: 905-920.e6 |
|
GSE132416 |
| Song, Yurong et al. (2013) Evolutionary etiology of high-grade astrocytomas.; Proc Natl Acad Sci U S A, 110: 17933-8 |
|
GSE26002 |
| Songok, Elijah M et al. (2012) Microarray analysis of HIV resistant female sex workers reveal a gene expression signature pattern reminiscent of a lowered immune activation state.; PLoS One, 7: e30048 |
|
GSE33580 |
| Soni, Nikul K et al. (2015) Eicosapentaenoic and docosahexaenoic acid-enriched high fat diet delays the development of fatty liver in mice.; Lipids Health Dis, 14: 74 |
|
GSE65370 |
| Sonn, Iki et al. (2022) Single transcription factor efficiently leads human induced pluripotent stem cells to functional microglia.; Inflamm Regen, 42: 20 |
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GSE178284 |
| Sonnenblick, Amir et al. (2015) Constitutive phosphorylated STAT3-associated gene signature is predictive for trastuzumab resistance in primary HER2-positive breast cancer.; BMC Med, 13: 177 |
|
GSE65095 |
| Sonner, Jana K et al. (2019) Dietary tryptophan links encephalogenicity of autoreactive T cells with gut microbial ecology.; Nat Commun, 10: 4877 |
|
GSE127190 |
| Sood, Sabina et al. (2020) CHD8 dosage regulates transcription in pluripotency and early murine neural differentiation.; Proc Natl Acad Sci U S A, 117: 22331-22340 |
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GSE155217 |
| Sood, Sanjana et al. (2015) A novel multi-tissue RNA diagnostic of healthy ageing relates to cognitive health status.; Genome Biol, 16: 185 |
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GSE63061 GSE63060 |
| Soon, Hui Rong et al. (2023) Seizure enhances SUMOylation and zinc-finger transcriptional repression in neuronal nuclei.; iScience, 26: 107707 |
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GSE205454 |
| Soon, P S H et al. (2009) Microarray gene expression and immunohistochemistry analyses of adrenocortical tumors identify IGF2 and Ki-67 as useful in differentiating carcinomas from adenomas.; Endocr Relat Cancer, 16: 573-83 |
|
GSE12368 |
| Soragni, Alice et al. (2016) A Designed Inhibitor of p53 Aggregation Rescues p53 Tumor Suppression in Ovarian Carcinomas.; Cancer Cell, 29: 90-103 |
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GSE74550 |
| Soragni, Elisabetta et al. (2014) Epigenetic therapy for Friedreich ataxia.; Ann Neurol, 76: 489-508 |
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GSE65399 |
| Soreq, Lilach et al. (2012) Deep brain stimulation induces rapidly reversible transcript changes in Parkinson's leucocytes.; J Cell Mol Med, 16: 1496-507 |
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GSE23676 |
| Soreq, Lilach et al. (2012) Meta-analysis of genetic and environmental Parkinson's disease models reveals a common role of mitochondrial protection pathways.; Neurobiol Dis, 45: 1018-30 |
|
GSE31458 |
| Soreq, Lilach et al. (2023) Single-cell RNA sequencing analysis of human Alzheimer's disease brain samples reveals neuronal and glial specific cells differential expression.; PLoS One, 18: e0277630 |
|
GSE175814 |
| Soria, Bernat et al. (2019) Human Mesenchymal Stem Cells Prevent Neurological Complications of Radiotherapy.; Front Cell Neurosci, 13: 204 |
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GSE115735 |
| Sorich, Michael J et al. (2008) In vivo response to methotrexate forecasts outcome of acute lymphoblastic leukemia and has a distinct gene expression profile.; PLoS Med, 5: e83 |
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GSE10255 |
| Soro-Arnáiz, Inés et al. (2024) GLUD1 determines murine muscle stem cell fate by controlling mitochondrial glutamate levels.; Dev Cell, [no vol.]: [no pages] |
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GSE243640 |
| Soroceanu, Liliana et al. (2015) Cytomegalovirus Immediate-Early Proteins Promote Stemness Properties in Glioblastoma.; Cancer Res, 75: 3065-76 |
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GSE56715 |
| Sorokina, Anastasia M et al. (2018) Striatal transcriptome of a mouse model of ADHD reveals a pattern of synaptic remodeling.; PLoS One, 13: e0201553 |
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GSE116752 |
| Soronen, Jarkko et al. (2012) Adipose tissue gene expression analysis reveals changes in inflammatory, mitochondrial respiratory and lipid metabolic pathways in obese insulin-resistant subjects.; BMC Med Genomics, 5: 9 |
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GSE26637 |
| Sosa-García, Bernadette et al. (2010) A role for the retinoblastoma protein as a regulator of mouse osteoblast cell adhesion: implications for osteogenesis and osteosarcoma formation.; PLoS One, 5: e13954 |
|
GSE19299 |
| Sotillo, Rocio et al. (2010) Mad2-induced chromosome instability leads to lung tumour relapse after oncogene withdrawal.; Nature, 464: 436-40 |
|
GSE19753 |
| Sotiriou, Christos et al. (2006) Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis.; J Natl Cancer Inst, 98: 262-72 |
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GSE2990 |
| Soto, Joselyn S et al. (2023) Astrocyte-neuron subproteomes and obsessive-compulsive disorder mechanisms.; Nature, 616: 764-773 |
|
GSE184773 |
| Soto-Diaz, Katiria et al. (2021) Treatment With the CSF1R Antagonist GW2580, Sensitizes Microglia to Reactive Oxygen Species.; Front Immunol, 12: 734349 |
|
GSE185564 |
| Soukar, Imad et al. (2024) The CoREST complex is a therapeutic vulnerability in malignant peripheral nerve sheath tumors.; bioRxiv, [no vol.]: [no pages] |
|
GSE275048 |
| Soula, Anaïs et al. (2018) Small RNA-Seq reveals novel miRNAs shaping the transcriptomic identity of rat brain structures.; Life Sci Alliance, 1: e201800018 |
|
GSE119349 |
| Soundararajan, Ramani et al. (2016) Global gene profiling of aging lungs in Atp8b1 mutant mice.; Aging (Albany NY), 8: 2232-2252 |
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GSE80680 |
| Soupsana, Katerina et al. (2021) Distinct roles of haspin in stem cell division and male gametogenesis.; Sci Rep, 11: 19901 |
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GSE154246 |
| Sousa, Kyle M et al. (2007) Microarray analyses support a role for Nurr1 in resistance to oxidative stress and neuronal differentiation in neural stem cells.; Stem Cells, [no vol.]: [no pages] |
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GSE3571 |
| Sousa-Victor, Pedro et al. (2014) Geriatric muscle stem cells switch reversible quiescence into senescence.; Nature, 506: 316-21 |
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GSE53724 GSE53726 GSE53725 GSE53727 |
| Southwell, Nneka et al. (2023) A coordinated multiorgan metabolic response contributes to human mitochondrial myopathy.; EMBO Mol Med, 15: e16951 |
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GSE224780 |
| Sowalsky, Adam G et al. (2015) Whole transcriptome sequencing reveals extensive unspliced mRNA in metastatic castration-resistant prostate cancer.; Mol Cancer Res, 13: 98-106 |
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GSE50630 GSE31528 |
| Sowinska, Weronika et al. (2024) Regnase-2 inhibits glioblastoma cell proliferation.; Sci Rep, 14: 1574 |
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GSE248634 |
| Sozmen, Elif G et al. (2019) White Matter Stroke Induces a Unique Oligo-Astrocyte Niche That Inhibits Recovery.; J Neurosci, 39: 9343-9359 |
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GSE53737 |
| Spach, Karen M et al. (2004) Gene expression analysis suggests that 1,25-dihydroxyvitamin D3 reverses experimental autoimmune encephalomyelitis by stimulating inflammatory cell apoptosis.; Physiol Genomics, 18: 141-51 |
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GSE842 |
| Spade, Daniel J et al. (2014) Differential response to abiraterone acetate and di-n-butyl phthalate in an androgen-sensitive human fetal testis xenograft bioassay.; Toxicol Sci, 138: 148-60 |
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GSE49244 |
| Spangenberg, Elizabeth et al. (2019) Sustained microglial depletion with CSF1R inhibitor impairs parenchymal plaque development in an Alzheimer's disease model.; Nat Commun, 10: 3758 |
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GSE134151 |
| Spann, Redin A et al. (2017) Chronic spinal cord changes in a high-fat diet-fed male rat model of thoracic spinal contusion.; Physiol Genomics, 49: 519-529 |
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GSE102964 |
| Spari, Daniel et al. (2024) Released bacterial ATP shapes local and systemic inflammation during abdominal sepsis.; Elife, 13: [no pages] |
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GSE272296 |
| Sparna, Titus et al. (2010) Genome-wide comparison between IL-17 and combined TNF-alpha/IL-17 induced genes in primary murine hepatocytes.; BMC Genomics, 11: 226 |
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GSE19272 |
| Spence, Jason R et al. (2011) Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro.; Nature, 470: 105-9 |
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GSE25557 |
| Spence, John Paul et al. (2018) Estrogen-Dependent Upregulation ofAdcyap1r1Expression in Nucleus Accumbens Is Associated With Genetic Predisposition of Sex-Specific QTL for Alcohol Consumption on Rat Chromosome 4.; Front Genet, 9: 513 |
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GSE112399 |
| Spentzos, Dimitrios et al. (2005) Unique gene expression profile based on pathologic response in epithelial ovarian cancer.; J Clin Oncol, 23: 7911-8 |
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GSE31245 |
| Sperber, Hannah S et al. (2023) The hypoxia-regulated ectonucleotidase CD73 is a host determinant of HIV latency.; Cell Rep, 42: 113285 |
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GSE244190 |
| Spiegel, Ivo et al. (2014) Npas4 regulates excitatory-inhibitory balance within neural circuits through cell-type-specific gene programs.; Cell, 157: 1216-29 |
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GSE55588 |
| Spieler, Derek et al. (2014) Restless legs syndrome-associated intronic common variant in Meis1 alters enhancer function in the developing telencephalon.; Genome Res, 24: 592-603 |
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GSE44592 |
| Spielman, Richard S et al. (2007) Common genetic variants account for differences in gene expression among ethnic groups.; Nat Genet, 39: 226-31 |
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GSE5859 |
| Spijker, Sabine et al. (2010) Stimulated gene expression profiles as a blood marker of major depressive disorder.; Biol Psychiatry, 68: 179-86 |
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GSE19738 |
| Spijkers-Hagelstein, J A P et al. (2012) Elevated S100A8/S100A9 expression causes glucocorticoid resistance in MLL-rearranged infant acute lymphoblastic leukemia.; Leukemia, [no vol.]: [no pages] |
|
GSE32962 |
| Spiljar, Martina et al. (2021) Cold exposure protects from neuroinflammation through immunologic reprogramming.; Cell Metab, [no vol.]: [no pages] |
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GSE172021.2 GSE172021.1 GSE183321 |
| Spiller, Krista J et al. (2018) Microglia-mediated recovery from ALS-relevant motor neuron degeneration in a mouse model of TDP-43 proteinopathy.; Nat Neurosci, 21: 329-340 |
|
GSE109171 |
| Spin, Joshua M et al. (2011) Transcriptional profiling and network analysis of the murine angiotensin II-induced abdominal aortic aneurysm.; Physiol Genomics, 43: 993-1003 |
|
GSE17901 |
| Spinelli, Laura et al. (2021) Phosphoinositide 3-Kinase p110 Delta Differentially Restrains and Directs Naïve Versus Effector CD8+ T Cell Transcriptional Programs.; Front Immunol, 12: 691997 |
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GSE169449 GSE169572 |
| Spira, Avrum et al. (2004) Effects of cigarette smoke on the human airway epithelial cell transcriptome.; Proc Natl Acad Sci U S A, 101: 10143-8 |
|
GSE994 |
| Spira, Avrum et al. (2004) Gene expression profiling of human lung tissue from smokers with severe emphysema.; Am J Respir Cell Mol Biol, 31: 601-10 |
|
GSE1650 |
| Spira, Avrum et al. (2007) Airway epithelial gene expression in the diagnostic evaluation of smokers with suspect lung cancer.; Nat Med, 13: 361-6 |
|
GSE4115 |
| Spitzer, Sonia Olivia et al. (2019) Oligodendrocyte Progenitor Cells Become Regionally Diverse and Heterogeneous with Age.; Neuron, 101: 459-471.e5 |
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GSE121083 |
| Spitzner, Melanie et al. (2010) A gene expression signature for chemoradiosensitivity of colorectal cancer cells.; Int J Radiat Oncol Biol Phys, 78: 1184-92 |
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GSE20298 |
| Spivak, Jerry L et al. (2014) Two clinical phenotypes in polycythemia vera.; N Engl J Med, 371: 808-17 |
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GSE47018 |
| Spradling, Kimberly D et al. (2011) Transcriptional analysis of rat piriform cortex following exposure to the organophosphonate anticholinesterase sarin and induction of seizures.; J Neuroinflammation, 8: 83 |
|
GSE28435 |
| Sprenger, Julia U et al. (2015) In vivo model with targeted cAMP biosensor reveals changes in receptor-microdomain communication in cardiac disease.; Nat Commun, 6: 6965 |
|
GSE65651 |
| Spriano, Filippo et al. (2019) Trabectedin is a novel chemotherapy agent for diffuse large B cell lymphoma.; Br J Haematol, 184: 1022-1025 |
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GSE104197 |
| Spurlock, Brian M et al. (2025) Mitochondrial fusion and cristae reorganization facilitate acquisition of cardiomyocyte identity during reprogramming of murine fibroblasts.; Cell Rep, 44: 115377 |
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GSE269231 |
| Spörl, Florian et al. (2012) Krüppel-like factor 9 is a circadian transcription factor in human epidermis that controls proliferation of keratinocytes.; Proc Natl Acad Sci U S A, 109: 10903-8 |
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GSE35635 |
| Squadrito, Mario Leonardo et al. (2014) Endogenous RNAs modulate microRNA sorting to exosomes and transfer to acceptor cells.; Cell Rep, 8: 1432-46 |
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GSE58283 |
| Squair, Jordan W et al. (2018) Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury.; Elife, 7: [no pages] |
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GSE115067 |
| Sredni, Simone T et al. (2009) Subsets of very low risk Wilms tumor show distinctive gene expression, histologic, and clinical features.; Clin Cancer Res, 15: 6800-9 |
|
GSE14767 |
| Sreenivasan, Krishnamoorthy et al. (2021) CHD4 ensures stem cell lineage fidelity during skeletal muscle regeneration.; Stem Cell Reports, 16: 2089-2098 |
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GSE179683 |
| Sridhar, Sriram et al. (2008) Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium.; BMC Genomics, 9: 259 |
|
GSE8987 |
| Sridhar, Sucheta et al. (2025) Targeting TREM2 signaling shows limited impact on cerebrovascular calcification.; Life Sci Alliance, 8: [no pages] |
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GSE263392.1 GSE263392.2 |
| Sridharan, Rupa et al. (2013) Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1? in reprogramming to pluripotency.; Nat Cell Biol, 15: 872-82 |
|
GSE44084 |
| Srikanth, Priya et al. (2015) Genomic DISC1 Disruption in hiPSCs Alters Wnt Signaling and Neural Cell Fate.; Cell Rep, 12: 1414-29 |
|
GSE71289 |
| Srimongkol, Atthapol et al. (2023) Sunitinib efficacy with minimal toxicity in patient-derived retinoblastoma organoids.; J Exp Clin Cancer Res, 42: 39 |
|
GSE201740 |
| Srinivasan, Karpagam et al. (2016) Untangling the brain's neuroinflammatory and neurodegenerative transcriptional responses.; Nat Commun, 7: 11295 |
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GSE74995 GSE75246 GSE75357 GSE75431 |
| Sripathi, Srinivasa R et al. (2023) IKKβ Inhibition Attenuates Epithelial Mesenchymal Transition of Human Stem Cell-Derived Retinal Pigment Epithelium.; Cells, 12: [no pages] |
|
GSE228934 |
| Srisuma, Sorachai et al. (2010) Fibroblast growth factor receptors control epithelial-mesenchymal interactions necessary for alveolar elastogenesis.; Am J Respir Crit Care Med, 181: 838-50 |
|
GSE15452 |
| Srivastava, Alaka et al. (2008) Age and gender related differences in human parotid gland gene expression.; Arch Oral Biol, 53: 1058-70 |
|
GSE8764 |
| Srivastava, Jyoti et al. (2012) Astrocyte elevated gene-1 promotes hepatocarcinogenesis: novel insights from a mouse model.; Hepatology, 56: 1782-91 |
|
GSE34669 |
| Srivastava, Jyoti et al. (2015) Astrocyte elevated gene-1 and c-Myc cooperate to promote hepatocarcinogenesis in mice.; Hepatology, 61: 915-29 |
|
GSE61875 |
| Srivastava, Jyoti et al. (2017) A novel role of astrocyte elevated gene-1 (AEG-1) in regulating nonalcoholic steatohepatitis (NASH).; Hepatology, 66: 466-480 |
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GSE85098 |
| Srivastava, Nishi et al. (2014) Inhibition of cancer cell proliferation by PPARγ is mediated by a metabolic switch that increases reactive oxygen species levels.; Cell Metab, 20: 650-61 |
|
GSE59735 |