List of all 16,887 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Spradling, Kimberly D et al. (2011) Transcriptional analysis of rat piriform cortex following exposure to the organophosphonate anticholinesterase sarin and induction of seizures.; J Neuroinflammation, 8: 83 |
|
GSE28435 |
| Sprenger, Julia U et al. (2015) In vivo model with targeted cAMP biosensor reveals changes in receptor-microdomain communication in cardiac disease.; Nat Commun, 6: 6965 |
|
GSE65651 |
| Spriano, Filippo et al. (2019) Trabectedin is a novel chemotherapy agent for diffuse large B cell lymphoma.; Br J Haematol, 184: 1022-1025 |
|
GSE104197 |
| Spurlock, Brian M et al. (2025) Mitochondrial fusion and cristae reorganization facilitate acquisition of cardiomyocyte identity during reprogramming of murine fibroblasts.; Cell Rep, 44: 115377 |
|
GSE269231 |
| Spörl, Florian et al. (2012) Krüppel-like factor 9 is a circadian transcription factor in human epidermis that controls proliferation of keratinocytes.; Proc Natl Acad Sci U S A, 109: 10903-8 |
|
GSE35635 |
| Squadrito, Mario Leonardo et al. (2014) Endogenous RNAs modulate microRNA sorting to exosomes and transfer to acceptor cells.; Cell Rep, 8: 1432-46 |
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GSE58283 |
| Squair, Jordan W et al. (2018) Integrated systems analysis reveals conserved gene networks underlying response to spinal cord injury.; Elife, 7: [no pages] |
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GSE115067 |
| Sredni, Simone T et al. (2009) Subsets of very low risk Wilms tumor show distinctive gene expression, histologic, and clinical features.; Clin Cancer Res, 15: 6800-9 |
|
GSE14767 |
| Sreenivasan, Krishnamoorthy et al. (2021) CHD4 ensures stem cell lineage fidelity during skeletal muscle regeneration.; Stem Cell Reports, 16: 2089-2098 |
|
GSE179683 |
| Sridhar, Sriram et al. (2008) Smoking-induced gene expression changes in the bronchial airway are reflected in nasal and buccal epithelium.; BMC Genomics, 9: 259 |
|
GSE8987 |
| Sridhar, Sucheta et al. (2025) Targeting TREM2 signaling shows limited impact on cerebrovascular calcification.; Life Sci Alliance, 8: [no pages] |
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GSE263392.1 GSE263392.2 |
| Sridharan, Rupa et al. (2013) Proteomic and genomic approaches reveal critical functions of H3K9 methylation and heterochromatin protein-1? in reprogramming to pluripotency.; Nat Cell Biol, 15: 872-82 |
|
GSE44084 |
| Srikanth, Priya et al. (2015) Genomic DISC1 Disruption in hiPSCs Alters Wnt Signaling and Neural Cell Fate.; Cell Rep, 12: 1414-29 |
|
GSE71289 |
| Srimongkol, Atthapol et al. (2023) Sunitinib efficacy with minimal toxicity in patient-derived retinoblastoma organoids.; J Exp Clin Cancer Res, 42: 39 |
|
GSE201740 |
| Srinivasan, Karpagam et al. (2016) Untangling the brain's neuroinflammatory and neurodegenerative transcriptional responses.; Nat Commun, 7: 11295 |
|
GSE74995 GSE75246 GSE75357 GSE75431 |
| Sripathi, Srinivasa R et al. (2023) IKKβ Inhibition Attenuates Epithelial Mesenchymal Transition of Human Stem Cell-Derived Retinal Pigment Epithelium.; Cells, 12: [no pages] |
|
GSE228934 |
| Srisuma, Sorachai et al. (2010) Fibroblast growth factor receptors control epithelial-mesenchymal interactions necessary for alveolar elastogenesis.; Am J Respir Crit Care Med, 181: 838-50 |
|
GSE15452 |
| Srivastava, Alaka et al. (2008) Age and gender related differences in human parotid gland gene expression.; Arch Oral Biol, 53: 1058-70 |
|
GSE8764 |
| Srivastava, Jyoti et al. (2012) Astrocyte elevated gene-1 promotes hepatocarcinogenesis: novel insights from a mouse model.; Hepatology, 56: 1782-91 |
|
GSE34669 |
| Srivastava, Jyoti et al. (2015) Astrocyte elevated gene-1 and c-Myc cooperate to promote hepatocarcinogenesis in mice.; Hepatology, 61: 915-29 |
|
GSE61875 |
| Srivastava, Jyoti et al. (2017) A novel role of astrocyte elevated gene-1 (AEG-1) in regulating nonalcoholic steatohepatitis (NASH).; Hepatology, 66: 466-480 |
|
GSE85098 |
| Srivastava, Nishi et al. (2014) Inhibition of cancer cell proliferation by PPARγ is mediated by a metabolic switch that increases reactive oxygen species levels.; Cell Metab, 20: 650-61 |
|
GSE59735 |
| Srivastava, Prashant K et al. (2018) A systems-level framework for drug discovery identifies Csf1R as an anti-epileptic drug target.; Nat Commun, 9: 3561 |
|
GSE77578 |
| Srivastava, Taasin et al. (2024) TSG-6 mediated extracellular matrix modifications regulate hypoxic-ischemic brain injury.; J Neurosci, [no vol.]: [no pages] |
|
GSE249085 |
| Sroka, Martyna W et al. (2023) Myo-differentiation reporter screen reveals NF-Y as an activator of PAX3-FOXO1 in rhabdomyosarcoma.; Proc Natl Acad Sci U S A, 120: e2303859120 |
|
GSE227594 |
| St John, Hillary C et al. (2014) The osteoblast to osteocyte transition: epigenetic changes and response to the vitamin D3 hormone.; Mol Endocrinol, 28: 1150-65 |
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GSE54783 |
| Staaf, Johan et al. (2012) Relation between smoking history and gene expression profiles in lung adenocarcinomas.; BMC Med Genomics, 5: 22 |
|
GSE29016 |
| Staal, F J T et al. (2010) Genome-wide expression analysis of paired diagnosis-relapse samples in ALL indicates involvement of pathways related to DNA replication, cell cycle and DNA repair, independent of immune phenotype.; Leukemia, 24: 491-9 |
|
GSE18497 |
| Staber, Philipp B et al. (2013) Sustained PU.1 levels balance cell-cycle regulators to prevent exhaustion of adult hematopoietic stem cells.; Mol Cell, 49: 934-46 |
|
GSE33031 |
| Stachelscheid, Johanna et al. (2023) The proto-oncogene TCL1A deregulates cell cycle and genomic stability in CLL.; Blood, 141: 1425-1441 |
|
GSE192409 |
| Stachowiak, E K et al. (2017) Cerebral organoids reveal early cortical maldevelopment in schizophrenia-computational anatomy and genomics, role of FGFR1.; Transl Psychiatry, 7: 6 |
|
GSE103307 |
| Staege, Martin S et al. (2004) DNA microarrays reveal relationship of Ewing family tumors to both endothelial and fetal neural crest-derived cells and define novel targets.; Cancer Res, 64: 8213-21 |
|
GSE1822 |
| Staff, Nathan P et al. (2023) Skin Extracellular Matrix Breakdown Following Paclitaxel Therapy in Patients with Chemotherapy-Induced Peripheral Neuropathy.; Cancers (Basel), 15: [no pages] |
|
GSE228633 |
| Staffas, A et al. (2017) Upregulation of Flt3 is a passive event in Hoxa9/Meis1-induced acute myeloid leukemia in mice.; Oncogene, 36: 1516-1524 |
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GSE75272 |
| Stahl, Ronny et al. (2013) Trnp1 regulates expansion and folding of the mammalian cerebral cortex by control of radial glial fate.; Cell, 153: 535-49 |
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GSE40582 |
| Stahl, Tyler J et al. (2022) ErbB Signaling Pathway Genes Are Differentially Expressed in Monozygotic Twins Discordant for Sports-Related Concussion.; Twin Res Hum Genet, 25: 77-84 |
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GSE176388 |
| Stam, Ronald W et al. (2010) Association of high-level MCL-1 expression with in vitro and in vivo prednisone resistance in MLL-rearranged infant acute lymphoblastic leukemia.; Blood, 115: 1018-25 |
|
GSE19143 |
| Stam, Ronald W et al. (2010) Gene expression profiling-based dissection of MLL translocated and MLL germline acute lymphoblastic leukemia in infants.; Blood, 115: 2835-44 |
|
GSE19475 |
| Stamatopoulos, B et al. (2009) Antileukemic activity of valproic acid in chronic lymphocytic leukemia B cells defined by microarray analysis.; Leukemia, 23: 2281-9 |
|
GSE14973 |
| Stambolsky, Perry et al. (2010) Modulation of the vitamin D3 response by cancer-associated mutant p53.; Cancer Cell, 17: 273-85 |
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GSE19670 |
| Stamper, Brendan D et al. (2010) Differential regulation of mitogen-activated protein kinase pathways by acetaminophen and its nonhepatotoxic regioisomer 3'-hydroxyacetanilide in TAMH cells.; Toxicol Sci, 116: 164-73 |
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GSE18614 |
| Stamper, Brendan D et al. (2011) Differential expression of extracellular matrix-mediated pathways in single-suture craniosynostosis.; PLoS One, 6: e26557 |
|
GSE27976 |
| Stanchfield, Megan L et al. (2020) Involvement ofHB-EGF/Ascl1/Lin28aGenes in Dedifferentiation of Adult Mammalian Müller Glia.; Front Mol Biosci, 7: 200 |
|
GSE151477 |
| Stanelle, Jens et al. (2010) Mechanisms of aberrant GATA3 expression in classical Hodgkin lymphoma and its consequences for the cytokine profile of Hodgkin and Reed/Sternberg cells.; Blood, 116: 4202-11 |
|
GSE22550 |
| Staniek, Julian et al. (2024) Non-apoptotic FAS signaling controls mTOR activation and extrafollicular maturation in human B cells.; Sci Immunol, 9: eadj5948 |
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GSE145513 |
| Stanke, Frauke et al. (2014) The CF-modifying gene EHF promotes p.Phe508del-CFTR residual function by altering protein glycosylation and trafficking in epithelial cells.; Eur J Hum Genet, 22: 660-6 |
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GSE15568 |
| Stankiewicz, Adrian M et al. (2015) The Effect of Acute and Chronic Social Stress on the Hippocampal Transcriptome in Mice.; PLoS One, 10: e0142195 |
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GSE59070 |
| Stanley, Sarah et al. (2013) Profiling of Glucose-Sensing Neurons Reveals that GHRH Neurons Are Activated by Hypoglycemia.; Cell Metab, 18: 596-607 |
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GSE49868 |
| Stanlie, Andre et al. (2012) The DSIF subunits Spt4 and Spt5 have distinct roles at various phases of immunoglobulin class switch recombination.; PLoS Genet, 8: e1002675 |
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GSE33206 |
| Stanlie, Andre et al. (2014) Chromatin reader Brd4 functions in Ig class switching as a repair complex adaptor of nonhomologous end-joining.; Mol Cell, 55: 97-110 |
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GSE52239 |
| Stany, Michael P et al. (2011) Identification of novel therapeutic targets in microdissected clear cell ovarian cancers.; PLoS One, 6: e21121 |
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GSE29450 |
| Stapelberg, Michael et al. (2014) Indoleamine-2,3-dioxygenase elevated in tumor-initiating cells is suppressed by mitocans.; Free Radic Biol Med, 67: 41-50 |
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GSE41980 |
| Stapleton, Andrea R et al. (2009) Subtoxic chlorpyrifos treatment resulted in differential expression of genes implicated in neurological functions and development.; Arch Toxicol, 83: 319-33 |
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GSE9751 |
| Stark, Kimberly L et al. (2008) Altered brain microRNA biogenesis contributes to phenotypic deficits in a 22q11-deletion mouse model.; Nat Genet, 40: 751-60 |
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GSE10784 |
| Starks, Rebekah R et al. (2020) Transcription Factor PLAGL1 Is Associated with Angiogenic Gene Expression in the Placenta.; Int J Mol Sci, 21: [no pages] |
|
GSE154577 |
| Starmann, Julia et al. (2012) Gene expression profiling unravels cancer-related hepatic molecular signatures in steatohepatitis but not in steatosis.; PLoS One, 7: e46584 |
|
GSE33814 |
| Starobova, Hana et al. (2019) Inflammatory and Neuropathic Gene Expression Signatures of Chemotherapy-Induced Neuropathy Induced by Vincristine, Cisplatin, and Oxaliplatin in C57BL/6J Mice.; J Pain, [no vol.]: [no pages] |
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GSE125001 GSE125002 |
| Starr, Alexander et al. (2023) Human iPSC-derived neurons reveal NMDAR-independent dysfunction following HIV-associated insults.; Front Mol Neurosci, 16: 1353562 |
|
GSE250609 |
| Starr, Izzy et al. (2021) Evolutionary context of psoriatic immune skin response.; Evol Med Public Health, 9: 474-486 |
|
GSE183820 |
| Staszewski, Ori et al. (2019) Unique microglia expression profile in developing white matter.; BMC Res Notes, 12: 367 |
|
GSE132688 |
| Staub, Eike et al. (2009) An expression module of WIPF1-coexpressed genes identifies patients with favorable prognosis in three tumor types.; J Mol Med (Berl), 87: 633-44 |
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GSE12945 |
| Staudt, Michelle R et al. (2018) Altered lung biology of healthy never smokers following acute inhalation of E-cigarettes.; Respir Res, 19: 78 |
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GSE85121 |
| Staunton, J E et al. (2001) Chemosensitivity prediction by transcriptional profiling.; Proc Natl Acad Sci U S A, 98: 10787-92 |
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staunton-nci60 GSE68936 |
| Stavely, Rhian et al. (2022) Schwann cells in the subcutaneous adipose tissue have neurogenic potential and can be used for regenerative therapies.; Sci Transl Med, 14: eabl8753 |
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GSE200689 |
| Stavely, Rhian et al. (2023) A distinct transcriptome characterizes neural crest-derived cells at the migratory wavefront during enteric nervous system development.; Development, 150: [no pages] |
|
GSE217757 |
| Stazi, Martina et al. (2021) Long-term caffeine treatment of Alzheimer mouse models ameliorates behavioural deficits and neuron loss and promotes cellular and molecular markers of neurogenesis.; Cell Mol Life Sci, [no vol.]: [no pages] |
|
GSE183323 |
| Steadman, Kenneth et al. (2023) Autonomous action and cooperativity between the ONECUT2 transcription factor and its 3' untranslated region.; Front Cell Dev Biol, 11: 1206259 |
|
GSE235003 |
| Stebbins, Matthew J et al. (2019) Human pluripotent stem cell-derived brain pericyte-like cells induce blood-brain barrier properties.; Sci Adv, 5: eaau7375 |
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GSE124579 |
| Steculorum, Sophie M et al. (2016) AgRP Neurons Control Systemic Insulin Sensitivity via Myostatin Expression in Brown Adipose Tissue.; Cell, 165: 125-138 |
|
GSE77766 |
| Steegenga, Wilma T et al. (2016) Maternal exposure to a Western-style diet causes differences in intestinal microbiota composition and gene expression of suckling mouse pups.; Mol Nutr Food Res, [no vol.]: [no pages] |
|
GSE72705 |
| Stefanelli, Gilda et al. (2018) Learning and Age-Related Changes in Genome-wide H2A.Z Binding in the Mouse Hippocampus.; Cell Rep, 22: 1124-1131 |
|
GSE100039 |
| Stefanelli, Gilda et al. (2021) The histone chaperone Anp32e regulates memory formation, transcription, and dendritic morphology by regulating steady-state H2A.Z binding in neurons.; Cell Rep, 36: 109551 |
|
GSE157006 |
| Stefanova, Maria E et al. (2023) Doxorubicin Changes the Spatial Organization of the Genome around Active Promoters.; Cells, 12: [no pages] |
|
GSE215321 |
| Stefanska, Barbara et al. (2011) Definition of the landscape of promoter DNA hypomethylation in liver cancer.; Cancer Res, 71: 5891-903 |
|
GSE29721 |
| Steffen, Janos et al. (2010) Proteasomal degradation is transcriptionally controlled by TCF11 via an ERAD-dependent feedback loop.; Mol Cell, 40: 147-58 |
|
GSE22853 |
| Stefka, Andrew T et al. (2020) Potent anti-myeloma activity of the TOPK inhibitor OTS514 in pre-clinical models.; Cancer Med, 9: 324-334 |
|
GSE128251 |
| Stegmaier, Kimberly et al. (2004) Gene expression-based high-throughput screening(GE-HTS) and application to leukemia differentiation.; Nat Genet, 36: 257-63 |
|
GSE982 GSE985 GSE976 |
| Stegmaier, Kimberly et al. (2007) Signature-based small molecule screening identifies cytosine arabinoside as an EWS/FLI modulator in Ewing sarcoma.; PLoS Med, 4: e122 |
|
GSE6930 |
| Steidl, Christian et al. (2010) Tumor-associated macrophages and survival in classic Hodgkin's lymphoma.; N Engl J Med, 362: 875-85 |
|
GSE17920 |
| Steidl, Christian et al. (2012) Gene expression profiling of microdissected Hodgkin Reed-Sternberg cells correlates with treatment outcome in classical Hodgkin lymphoma.; Blood, 120: 3530-40 |
|
GSE39133 GSE39134 |
| Stein, Colleen S et al. (2022) Modulation of miR-181 influences dopaminergic neuronal degeneration in a mouse model of Parkinson's disease.; Mol Ther Nucleic Acids, 28: 1-15 |
|
GSE196441 |
| Stein, Daniel et al. (2021) Aging and pathological aging signatures of the brain: through the focusing lens of SIRT6.; Aging (Albany NY), 13: 6420-6441 |
|
GSE178432 |
| Stein, Gregor et al. (2024) Transthyretin Orchestrates Vitamin B12-Induced Stress Resilience.; Biol Psychiatry, [no vol.]: [no pages] |
|
GSE267339 |
| Stein, Jason L et al. (2014) A quantitative framework to evaluate modeling of cortical development by neural stem cells.; Neuron, 83: 69-86 |
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GSE57595 |
| Stein, Paula et al. (2015) Essential Role for endogenous siRNAs during meiosis in mouse oocytes.; PLoS Genet, 11: e1005013 |
|
GSE57514 |
| Stein, Rebecca A et al. (2008) Estrogen-related receptor alpha is critical for the growth of estrogen receptor-negative breast cancer.; Cancer Res, 68: 8805-12 |
|
GSE11266 |
| Stein, Sarah J et al. (2013) Deletion of the NF-?B subunit p65/RelA in the hematopoietic compartment leads to defects in hematopoietic stem cell function.; Blood, 121: 5015-24 |
|
GSE45755 |
| Stein, Thor D et al. (2004) Neutralization of transthyretin reverses the neuroprotective effects of secreted amyloid precursor protein (APP) in APPSW mice resulting in tau phosphorylation and loss of hippocampal neurons: support for the amyloid hypothesis.; J Neurosci, 24: 7707-17 |
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GSE1555 GSE1556 |
| Stein, Torsten et al. (2004) Involution of the mouse mammary gland is associated with an immune cascade and an acute-phase response, involving LBP, CD14 and STAT3.; Breast Cancer Res, 6: R75-91 |
|
GSE12247 |
| Steinberg, Daniel J et al. (2021) Modeling genetic epileptic encephalopathies using brain organoids.; EMBO Mol Med, 13: e13610 |
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GSE156243 |