List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Rajendren, Suba et al. (2023) The cellular and KSHV A-to-I RNA editome in primary effusion lymphoma and its role in the viral lifecycle.; Nat Commun, 14: 1367 |
|
GSE212350 |
| Rajesh, Yetirajam et al. (2022) Dissecting the Balance Between Metabolic and Oncogenic Functions of Astrocyte-Elevated Gene-1/Metadherin.; Hepatol Commun, 6: 561-575 |
|
GSE156849 |
| Rajkumar, Anto P et al. (2020) Reduced Brd1 expression leads to reversible depression-like behaviors and gene-expression changes in female mice.; Transl Psychiatry, 10: 239 |
|
GSE150431 GSE150264 GSE150028 |
| Rajkumar, Revathi et al. (2010) Genomewide RNA expression profiling in lung identifies distinct signatures in idiopathic pulmonary arterial hypertension and secondary pulmonary hypertension.; Am J Physiol Heart Circ Physiol, 298: H1235-48 |
|
GSE15197 |
| Rajman, Marek et al. (2017) A microRNA-129-5p/Rbfox crosstalk coordinates homeostatic downscaling of excitatory synapses.; EMBO J, 36: 1770-1787 |
|
GSE81437 |
| Raju, Chandrasekhar S et al. (2018) Secretagogin is Expressed by Developing Neocortical GABAergic Neurons in Humans but not Mice and Increases Neurite Arbor Size and Complexity.; Cereb Cortex, 28: 1946-1958 |
|
GSE95639 |
| Rakhshandehroo, Maryam et al. (2007) Comprehensive analysis of PPARalpha-dependent regulation of hepatic lipid metabolism by expression profiling.; PPAR Res, 2007: 26839 |
|
GSE8316.3 |
| Rakhshandehroo, Maryam et al. (2009) Comparative analysis of gene regulation by the transcription factor PPARalpha between mouse and human.; PLoS One, 4: e6796 |
|
GSE17254.2 GSE17254.1 |
| Ralston, Amy et al. (2010) Gata3 regulates trophoblast development downstream of Tead4 and in parallel to Cdx2.; Development, 137: 395-403 |
|
GSE12985 GSE12986 |
| Ralvenius, William T et al. (2023) A novel molecular class that recruits HDAC/MECP2 complexes to PU.1 motifs reduces neuroinflammation.; J Exp Med, 220: [no pages] |
|
GSE218513 |
| Ramachandiran, Sampath et al. (2015) Chromosome instability in diffuse large B cell lymphomas is suppressed by activation of the noncanonical NF-κB pathway.; Int J Cancer, 136: 2341-51 |
|
GSE24020 |
| Ramagopalan, Sreeram V et al. (2010) A ChIP-seq defined genome-wide map of vitamin D receptor binding: associations with disease and evolution.; Genome Res, 20: 1352-60 |
|
GSE22174 GSE22172 |
| Ramaker, Ryne C et al. (2017) Post-mortem molecular profiling of three psychiatric disorders.; Genome Med, 9: 72 |
|
GSE80655 |
| Ramakrishnan, Swathi et al. (2024) Race-specific coregulatory and transcriptomic profiles associated with DNA methylation and androgen receptor in prostate cancer.; Genome Med, 16: 52 |
|
GSE237995 |
| Ramamurthy, Narayan et al. (2016) Impact of IL-27 on hepatocyte antiviral gene expression and function.; Wellcome Open Res, 1: 17 |
|
GSE89610 |
| Raman, Ayush T et al. (2018) Apparent bias toward long gene misregulation in MeCP2 syndromes disappears after controlling for baseline variations.; Nat Commun, 9: 3225 |
|
GSE105045 |
| Raman, Rohini et al. (2015) Gene expression signatures in motor neurone disease fibroblasts reveal dysregulation of metabolism, hypoxia-response and RNA processing functions.; Neuropathol Appl Neurobiol, 41: 201-26 |
|
GSE56808 |
| Raman, Tina et al. (2009) Quality control in microarray assessment of gene expression in human airway epithelium.; BMC Genomics, 10: 493 |
|
GSE11906 |
| Ramani, Biswarathan et al. (2017) Comparison of spinocerebellar ataxia type 3 mouse models identifies early gain-of-function, cell-autonomous transcriptional changes in oligodendrocytes.; Hum Mol Genet, 26: 3362-3374 |
|
GSE117605 |
| Ramani, Manimaran et al. (2018) Supraphysiological Levels of Oxygen Exposure During the Neonatal Period Impairs Signaling Pathways Required for Learning and Memory.; Sci Rep, 8: 9914 |
|
GSE111189 |
| Ramaswamy, S et al. (2001) Multiclass cancer diagnosis using tumor gene expression signatures.; Proc Natl Acad Sci U S A, 98: 15149-54 |
|
ramaswamy-cancer |
| Rambousek, Lukas et al. (2020) Aberrant expression of PAR bZIP transcription factors is associated with epileptogenesis, focus on hepatic leukemia factor.; Sci Rep, 10: 3760 |
|
GSE140046 |
| Rambout, Xavier et al. (2016) The transcription factor ERG recruits CCR4-NOT to control mRNA decay and mitotic progression.; Nat Struct Mol Biol, 23: 663-72 |
|
GSE80395 |
| Ramesh, Raghu et al. (2022) JUN Regulation of Injury-Induced Enhancers in Schwann Cells.; J Neurosci, 42: 6506-6517 |
|
GSE209658 |
| Ramesh, Vidya et al. (2016) Loss of Uhrf1 in neural stem cells leads to activation of retroviral elements and delayed neurodegeneration.; Genes Dev, 30: 2199-2212 |
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GSE84548 GSE84547 GSE84550 |
| Ramesh, Vijyendra et al. (2023) Bidirectional regulation of postmitotic H3K27me3 distributions underlie cerebellar granule neuron maturation dynamics.; Elife, 12: [no pages] |
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GSE230712 GSE218685 |
| Ramirez, Kevin et al. (2012) Gene deregulation and chronic activation in natural killer cells deficient in the transcription factor ETS1.; Immunity, 36: 921-32 |
|
GSE37301 |
| Ramirez, Paulino et al. (2022) Pathogenic tau accelerates aging-associated activation of transposable elements in the mouse central nervous system.; Prog Neurobiol, 208: 102181 |
|
GSE186140 GSE186228 |
| Ramirez, Ricardo N et al. (2017) Dynamic Gene Regulatory Networks of Human Myeloid Differentiation.; Cell Syst, 4: 416-429.e3 |
|
GSE87055 |
| Ramiro, Laura et al. (2021) Integrative Multi-omics Analysis to Characterize Human Brain Ischemia.; Mol Neurobiol, 58: 4107-4121 |
|
GSE162955 |
| Ramnarine, Varune Rohan et al. (2018) The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implications.; Gigascience, 7: [no pages] |
|
GSE59986.2 |
| Ramonet, David et al. (2025) Stabilizing the retromer complex rescues synaptic dysfunction and endosomal trafficking deficits in an Alzheimer's disease mouse model.; Acta Neuropathol Commun, 13: 190 |
|
GSE267989 |
| Ramos Pittol, Jose Miguel et al. (2020) FXR Isoforms Control Different Metabolic Functions in Liver Cells via Binding to Specific DNA Motifs.; Gastroenterology, 159: 1853-1865.e10 |
|
GSE133659 |
| Ramos, Alexander D et al. (2013) Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo.; Cell Stem Cell, 12: 616-28 |
|
GSE45280 |
| Ramos, Alexander D et al. (2015) The long noncoding RNA Pnky regulates neuronal differentiation of embryonic and postnatal neural stem cells.; Cell Stem Cell, 16: 439-447 |
|
GSE65542 |
| Ramos, Azucena et al. (2023) Leukemia-intrinsic determinants of CAR-T response revealed by iterative in vivo genome-wide CRISPR screening.; Nat Commun, 14: 8048 |
|
GSE196135 |
| Ramos, Carlos A et al. (2006) Evidence for diversity in transcriptional profiles of single hematopoietic stem cells.; PLoS Genet, 2: e159 |
|
GSE2534 |
| Ramos, Hugo et al. (2022) Transcriptomic Analysis Reveals That Retinal Neuromodulation Is a Relevant Mechanism in the Neuroprotective Effect of Sitagliptin in an Experimental Model of Diabetic Retinopathy.; Int J Mol Sci, 24: [no pages] |
|
GSE219084 |
| Ramos, Raul et al. (2025) Superstable lipid vacuoles endow cartilage with its shape and biomechanics.; Science, 387: eads9960 |
|
GSE275825 |
| Ramos, Susana I et al. (2022) An atlas of late prenatal human neurodevelopment resolved by single-nucleus transcriptomics.; Nat Commun, 13: 7671 |
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GSE217511.1 GSE217511.2 |
| Ramos, Yolande F M et al. (2013) Genes expressed in blood link osteoarthritis with apoptotic pathways.; Ann Rheum Dis, [no vol.]: [no pages] |
|
GSE48556 |
| Ramos-Campoy, Oscar et al. (2022) Differential Gene Expression in Sporadic and Genetic Forms of Alzheimer's Disease and Frontotemporal Dementia in Brain Tissue and Lymphoblastoid Cell Lines.; Mol Neurobiol, 59: 6411-6428 |
|
GSE195872 |
| Ramos-Cejudo, Jaime et al. (2012) Spatial and temporal gene expression differences in core and periinfarct areas in experimental stroke: a microarray analysis.; PLoS One, 7: e52121 |
|
GSE36010 |
| Rampazzo, Elena et al. (2022) Histone Deacetylase Inhibitors Impair Glioblastoma Cell Motility and Proliferation.; Cancers (Basel), 14: [no pages] |
|
GSE191126 |
| Rampersaud, Evadnie et al. (2013) Genomic signatures of a global fitness index in a multi-ethnic cohort of women.; Ann Hum Genet, 77: 147-57 |
|
GSE34788 |
| Rampil, Ira J et al. (2006) Isoflurane modulates genomic expression in rat amygdala.; Anesth Analg, 102: 1431-8 |
|
GSE1779 |
| Rampioni Vinciguerra, Gian Luca et al. (2024) Nutrient restriction-activated Fra-2 promotes tumor progression via IGF1R in miR-15a downmodulated pancreatic ductal adenocarcinoma.; Signal Transduct Target Ther, 9: 31 |
|
GSE237163 GSE237164 |
| Rampon, Christine et al. (2008) Protocadherin 12 deficiency alters morphogenesis and transcriptional profile of the placenta.; Physiol Genomics, 34: 193-204 |
|
GSE7676 |
| Ramsden, Helen L et al. (2015) Laminar and dorsoventral molecular organization of the medial entorhinal cortex revealed by large-scale anatomical analysis of gene expression.; PLoS Comput Biol, 11: e1004032 |
|
GSE63300 |
| Ramsey, Jon E et al. (2013) The zinc finger transcription factor ZXDC activates CCL2 gene expression by opposing BCL6-mediated repression.; Mol Immunol, 56: 768-80 |
|
GSE45417 |
| Ramsey, Kathryn A et al. (2013) In utero exposure to arsenic alters lung development and genes related to immune and mucociliary function in mice.; Environ Health Perspect, 121: 244-50 |
|
GSE37831 |
| Ramshekar, Aniket et al. (2022) RNA-Seq Provides Insights into VEGF-Induced Signaling in Human Retinal Microvascular Endothelial Cells: Implications in Retinopathy of Prematurity.; Int J Mol Sci, 23: [no pages] |
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GSE221861 GSE221860 |
| Ramsingh, Arlene I et al. (2015) Transcriptional dysregulation of inflammatory/immune pathways after active vaccination against Huntington's disease.; Hum Mol Genet, 24: 6186-97 |
|
GSE71816 |
| Ramírez, Sara et al. (2017) Mitochondrial Dynamics Mediated by Mitofusin 1 Is Required for POMC Neuron Glucose-Sensing and Insulin Release Control.; Cell Metab, 25: 1390-1399.e6 |
|
GSE81993 |
| Ramírez-Jarquín, Uri Nimrod et al. (2022) Deletion of SUMO1 attenuates behavioral and anatomical deficits by regulating autophagic activities in Huntington disease.; Proc Natl Acad Sci U S A, 119: [no pages] |
|
GSE172379 |
| Ran, Leili et al. (2015) Combined inhibition of MAP kinase and KIT signaling synergistically destabilizes ETV1 and suppresses GIST tumor growth.; Cancer Discov, 5: 304-15 |
|
GSE64608 |
| Rana, Rajiv et al. (2024) Glomerular-tubular crosstalk via cold shock Y-box binding protein-1 in the kidney.; Kidney Int, 105: 65-83 |
|
GSE239313 |
| Randall, Louise M et al. (2008) Common strategies to prevent and modulate experimental cerebral malaria in mouse strains with different susceptibilities.; Infect Immun, 76: 3312-20 |
|
GSE6019 |
| Rangasamy, Tirumalai et al. (2009) Cigarette smoke-induced emphysema in A/J mice is associated with pulmonary oxidative stress, apoptosis of lung cells, and global alterations in gene expression.; Am J Physiol Lung Cell Mol Physiol, 296: L888-900 |
|
GSE8790 |
| Rangel, Alejandra et al. (2009) Regulation of GABA(A) and glutamate receptor expression, synaptic facilitation and long-term potentiation in the hippocampus of prion mutant mice.; PLoS One, 4: e7592 |
|
GSE16223 |
| Rangel-Salazar, Rubén et al. (2011) Human native lipoprotein-induced de novo DNA methylation is associated with repression of inflammatory genes in THP-1 macrophages.; BMC Genomics, 12: 582 |
|
GSE9101 |
| Rani, Neha et al. (2016) A Primate lncRNA Mediates Notch Signaling during Neuronal Development by Sequestering miRNA.; Neuron, 90: 1174-1188 |
|
GSE73982 |
| Rankin, Lucille C et al. (2016) Complementarity and redundancy of IL-22-producing innate lymphoid cells.; Nat Immunol, 17: 179-86 |
|
GSE72909 |
| Ransom, Linnea S et al. (2024) Human brain small extracellular vesicles contain selectively packaged, full-length mRNA.; Cell Rep, 43: 114061 |
|
GSE243611 |
| Ranzani, Marco et al. (2013) Lentiviral vector-based insertional mutagenesis identifies genes associated with liver cancer.; Nat Methods, 10: 155-61 |
|
GSE31409 |
| Rao, Aparna et al. (2024) All-trans retinoic acid induces durable tumor immunity in IDH-mutant gliomas by rescuing transcriptional repression of the CRBP1-retinoic acid axis.; bioRxiv, [no vol.]: [no pages] |
|
GSE252527 |
| Rao, Chinthalapally V et al. (2018) Spontaneous development of Alzheimer's disease-associated brain pathology in a Shugoshin-1 mouse cohesinopathy model.; Aging Cell, [no vol.]: e12797 |
|
GSE115185 |
| Rao, Jie et al. (2023) A novel role for astrocytic fragmented mitochondria in regulating morphine addiction.; Brain Behav Immun, 113: 328-339 |
|
GSE239387 |
| Rao, Mahadev et al. (2016) Mithramycin Depletes Specificity Protein 1 and Activates p53 to Mediate Senescence and Apoptosis of Malignant Pleural Mesothelioma Cells.; Clin Cancer Res, 22: 1197-210 |
|
GSE64738.1 GSE64738.2 |
| Rao, Mishal et al. (2023) Aldose reductase inhibition decelerates optic nerve degeneration by alleviating retinal microglia activation.; Sci Rep, 13: 5592 |
|
GSE200233 |
| Rao, Sneha B et al. (2025) Aberrant pace of cortical neuron development in brain organoids from patients with 22q11.2 deletion syndrome-associated schizophrenia.; Nat Commun, 16: 6986 |
|
GSE244006 |
| Rao, Vanitha Venkoba et al. (2026) Cranial placode differentiation defect in individuals born without a nose.; Stem Cell Reports, [no vol.]: 102890 |
|
GSE296453 |
| Rao, Vinay Kumar et al. (2019) Phosphorylation of Tet3 by cdk5 is critical for robust activation of BRN2 during neuronal differentiation.; Nucleic Acids Res, [no vol.]: [no pages] |
|
GSE130384 |
| Rao, Xi et al. (2019) Allele-specific expression and high-throughput reporter assay reveal functional genetic variants associated with alcohol use disorders.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE131470 |
| Rao, Yu-Qing et al. (2020) mTORC1 Activation inChx10-SpecificTsc1Knockout Mice Accelerates Retina Aging and Degeneration.; Oxid Med Cell Longev, 2021: 6715758 |
|
GSE177039 |
| Rao, Zhiping et al. (2021) Molecular Mechanisms Underlying Ascl1-Mediated Astrocyte-to-Neuron Conversion.; Stem Cell Reports, 16: 534-547 |
|
GSE132674 |
| Rapanelli, Maximiliano et al. (2022) Targeting histone demethylase LSD1 for treatment of deficits in autism mouse models.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE193380 |
| Rapaport, Franck et al. (2013) Comprehensive evaluation of differential gene expression analysis methods for RNA-seq data.; Genome Biol, 14: R95 |
|
GSE49712 |
| Rapin, Nicolas et al. (2014) Comparing cancer vs normal gene expression profiles identifies new disease entities and common transcriptional programs in AML patients.; Blood, 123: 894-904 |
|
GSE42519 |
| Raponi, Mitch et al. (2007) Identification of molecular predictors of response in a study of tipifarnib treatment in relapsed and refractory acute myelogenous leukemia.; Clin Cancer Res, 13: 2254-60 |
|
GSE5122 |
| Raponi, Mitch et al. (2008) A 2-gene classifier for predicting response to the farnesyltransferase inhibitor tipifarnib in acute myeloid leukemia.; Blood, 111: 2589-96 |
|
GSE8970 |
| Rapp, Julian et al. (2024) Oncostatin M Reduces Pathological Neovascularization in the Retina Through Müller Cell Activation.; Invest Ophthalmol Vis Sci, 65: 22 |
|
GSE227350 |
| Rappoport, Nimrod et al. (2023) Single cell Hi-C identifies plastic chromosome conformations underlying the gastrulation enhancer landscape.; Nat Commun, 14: 3844 |
|
GSE205117 |
| Rasa, Seyed Mohammad Mahdi et al. (2022) Inflammaging is driven by upregulation of innate immune receptors and systemic interferon signaling and is ameliorated by dietary restriction.; Cell Rep, 39: 111017 |
|
GSE162802 |
| Rashi-Elkeles, Sharon et al. (2011) Transcriptional modulation induced by ionizing radiation: p53 remains a central player.; Mol Oncol, 5: 336-48 |
|
GSE30240 |
| Rashkovan, Marissa et al. (2014) Miz-1 regulates translation of Trp53 via ribosomal protein L22 in cells undergoing V(D)J recombination.; Proc Natl Acad Sci U S A, 111: E5411-9 |
|
GSE57694 |
| Raskatov, Jevgenij A et al. (2012) Modulation of NF-?B-dependent gene transcription using programmable DNA minor groove binders.; Proc Natl Acad Sci U S A, 109: 1023-8 |
|
GSE34329 |