List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Raskin, Leon et al. (2013) Transcriptome Profiling Identifies HMGA2 as a Biomarker of Melanoma Progression and Prognosis.; J Invest Dermatol, 133: 2585-92 |
|
GSE15605 |
| Raskó, Tamás et al. (2022) A Novel Gene Controls a New Structure: PiggyBac Transposable Element-Derived 1, Unique to Mammals, Controls Mammal-Specific Neuronal Paraspeckles.; Mol Biol Evol, 39: [no pages] |
|
GSE213757 |
| Rasmussen, Angela L et al. (2012) Early transcriptional programming links progression to hepatitis C virus-induced severe liver disease in transplant patients.; Hepatology, 56: 17-27 |
|
GSE34798 |
| Rasmussen, Jay et al. (2021) An early proinflammatory transcriptional response to tau pathology is age-specific and foreshadows reduced tau burden.; Brain Pathol, [no vol.]: e13018 |
|
GSE169686 |
| Rasmussen, Mads Heilskov et al. (2016) miR-625-3p regulates oxaliplatin resistance by targeting MAP2K6-p38 signalling in human colorectal adenocarcinoma cells.; Nat Commun, 7: 12436 |
|
GSE83129 |
| Rasmussen, Mikkel A et al. (2014) Transient p53 suppression increases reprogramming of human fibroblasts without affecting apoptosis and DNA damage.; Stem Cell Reports, 3: 404-13 |
|
GSE48665 |
| Rasool, Reyaz Ur et al. (2023) Loss of LCMT1 and biased protein phosphatase 2A heterotrimerization drive prostate cancer progression and therapy resistance.; Nat Commun, 14: 5253 |
|
GSE205419.1 GSE205419.2 |
| Rasouli, Javad et al. (2021) IFN-β Acts on Monocytes to Ameliorate CNS Autoimmunity by Inhibiting Proinflammatory Cross-Talk Between Monocytes and Th Cells.; Front Immunol, 12: 679498 |
|
GSE169670 |
| Rastogi, Mohit et al. (2024) Integrative multi-omic analysis reveals conserved cell-projection deficits in human Down syndrome brains.; Neuron, 112: 2503-2523.e10 |
|
GSE221178 |
| Rath, Barbara H et al. (2013) Astrocytes enhance the invasion potential of glioblastoma stem-like cells.; PLoS One, 8: e54752 |
|
GSE37120 |
| Rath, Poonam et al. (2013) Genetic regulation of vesiculogenesis and immunomodulation in Mycobacterium tuberculosis.; Proc Natl Acad Sci U S A, 110: E4790-7 |
|
GSE50050 |
| Rath, Sneha et al. (2015) Human RNase L tunes gene expression by selectively destabilizing the microRNA-regulated transcriptome.; Proc Natl Acad Sci U S A, 112: 15916-21 |
|
GSE75530 |
| Rathe, Susan K et al. (2025) Techniques for Validating CRISPR Changes Using RNA-Sequencing Data.; Genes (Basel), 16: [no pages] |
|
GSE100181 |
| Rathert, Philipp et al. (2015) Transcriptional plasticity promotes primary and acquired resistance to BET inhibition.; Nature, 525: 543-547 |
|
GSE63782.2.2 |
| Rathi, Abhilasha V et al. (2010) Induction of interferon-stimulated genes by Simian virus 40 T antigens.; Virology, 406: 202-11 |
|
GSE20620 |
| Rathore, Abhay P S et al. (2021) Immunological and Pathological Landscape of Dengue Serotypes 1-4 Infections in Immune-Competent Mice.; Front Immunol, 12: 681950 |
|
GSE174806 GSE174805 |
| Ratnaparkhe, Manasi et al. (2018) Defective DNA damage repair leads to frequent catastrophic genomic events in murine and human tumors.; Nat Commun, 9: 4760 |
|
GSE120344 |
| Rattner, Amir et al. (2005) The genomic response to retinal disease and injury: evidence for endothelin signaling from photoreceptors to glia.; J Neurosci, 25: 4540-9 |
|
GSE10535 GSE10528 |
| Rattner, Amir et al. (2013) Endothelin-2 signaling in the neural retina promotes the endothelial tip cell state and inhibits angiogenesis.; Proc Natl Acad Sci U S A, 110: E3830-9 |
|
GSE50059 |
| Rauch, Philipp J et al. (2012) Innate response activator B cells protect against microbial sepsis.; Science, 335: 597-601 |
|
GSE32372 |
| Raue, Ulrika et al. (2012) Transcriptome signature of resistance exercise adaptations: mixed muscle and fiber type specific profiles in young and old adults.; J Appl Physiol (1985), 112: 1625-36 |
|
GSE25941 GSE28422 GSE28392 |
| Raus, Anthony M et al. (2023) Early-life exercise primes the murine neural epigenome to facilitate gene expression and hippocampal memory consolidation.; Commun Biol, 6: 18 |
|
GSE208714 |
| Raveh, Avi et al. (2013) Discovery of potent broad spectrum antivirals derived from marine actinobacteria.; PLoS One, 8: e82318 |
|
GSE44541 |
| Ravel-Godreuil, Camille et al. (2024) Transcriptional Responses of Different Brain Cell Types to Oxygen Decline.; Brain Sci, 14: [no pages] |
|
GSE262728 |
| Raveney, Ben J E et al. (2015) Eomesodermin-expressing T-helper cells are essential for chronic neuroinflammation.; Nat Commun, 6: 8437 |
|
GSE72301 |
| Ravi, Dashnamoorthy et al. (2016) Proteasomal Inhibition by Ixazomib Induces CHK1 and MYC-Dependent Cell Death in T-cell and Hodgkin Lymphoma.; Cancer Res, 76: 3319-31 |
|
GSE66415 GSE66417 |
| Ravi, Dashnamoorthy et al. (2021) Oncogenic Integration of Nucleotide MetabolismviaFatty Acid Synthase in Non-Hodgkin Lymphoma.; Front Oncol, 11: 725137 |
|
GSE102760 GSE102764 |
| Raviv, Shaul et al. (2014) PAX6 regulates melanogenesis in the retinal pigmented epithelium through feed-forward regulatory interactions with MITF.; PLoS Genet, 10: e1004360 |
|
GSE56548 |
| Ravoet, Marie et al. (2009) Molecular profiling of CD3-CD4+ T cells from patients with the lymphocytic variant of hypereosinophilic syndrome reveals targeting of growth control pathways.; Blood, 114: 2969-83 |
|
GSE12079 |
| Rawat, Chitra et al. (2020) Peripheral blood gene expression signatures associated with epilepsy and its etiologic classification.; Genomics, 112: 218-224 |
|
GSE143272 |
| Rawat, Rohit Singh et al. (2022) Early life stressful experiences escalate aggressive behavior in adulthood via changes in transthyretin expression and function.; Elife, 11: [no pages] |
|
GSE199844 |
| Rawji, Khalil S et al. (2020) Niacin-mediated rejuvenation of macrophage/microglia enhances remyelination of the aging central nervous system.; Acta Neuropathol, 139: 893-909 |
|
GSE129000 |
| Ray Das, Sankalita et al. (2025) Recurrent de novo variants in the spliceosomal factor CRNKL1 are associated with severe microcephaly and pontocerebellar hypoplasia with seizures.; Am J Hum Genet, 112: 1722-1732 |
|
GSE294227 |
| Ray, M et al. (2007) Expression profiling of human donor lungs to understand primary graft dysfunction after lung transplantation.; Am J Transplant, 7: 2396-405 |
|
GSE8021 |
| Ray, Monika et al. (2012) Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks.; BMC Genomics, 13: 190 |
|
GSE29344 |
| Ray, Sandipan et al. (2020) Circadian rhythms in the absence of the clock geneBmal1.; Science, 367: 800-806 |
|
GSE111696.1 GSE111696.2 GSE134333.1 GSE111696.3 GSE134333.2 |
| Ray, Surjyendu et al. (2015) An Examination of Dynamic Gene Expression Changes in the Mouse Brain During Pregnancy and the Postpartum Period.; G3 (Bethesda), 6: 221-33 |
|
GSE70732 |
| Rayan, Nirmala Arul et al. (2022) Integrative multi-omics landscape of fluoxetine action across 27 brain regions reveals global increase in energy metabolism and region-specific chromatin remodelling.; Mol Psychiatry, 27: 4510-4525 |
|
GSE194289.1 |
| Rayan, Nirmala Arul et al. (2024) Shared and unique transcriptomic signatures of antidepressant and probiotics action in the mammalian brain.; Mol Psychiatry, 29: 3653-3668 |
|
GSE222756 |
| Raymond, Frederic et al. (2010) Comparative gene expression profiling between human cultured myotubes and skeletal muscle tissue.; BMC Genomics, 11: 125 |
|
GSE17503 |
| Raymond, Frédéric et al. (2012) Consequences of exchanging carbohydrates for proteins in the cholesterol metabolism of mice fed a high-fat diet.; PLoS One, 7: e49058 |
|
GSE20260 |
| Raynor, Jana L et al. (2024) CRISPR screens unveil nutrient-dependent lysosomal and mitochondrial nodes impacting intestinal tissue-resident memory CD8+T cell formation.; Immunity, 57: 2597-2614.e13 |
|
GSE231342 |
| Rayon, Teresa et al. (2020) Species-specific pace of development is associated with differences in protein stability.; Science, 369: [no pages] |
|
GSE140748 GSE140747 |
| Rea, Jessica et al. (2021) Identification and Functional Characterization of Novel MYC-Regulated Long Noncoding RNAs in Group 3 Medulloblastoma.; Cancers (Basel), 13: [no pages] |
|
GSE171117 |
| Read, Renee D (2018) Pvr receptor tyrosine kinase signaling promotes post-embryonic morphogenesis, and survival of glia and neural progenitor cells inDrosophila.; Development, 145: [no pages] |
|
GSE122679 |
| Read, Tracy-Ann et al. (2009) Identification of CD15 as a marker for tumor-propagating cells in a mouse model of medulloblastoma.; Cancer Cell, 15: 135-47 |
|
GSE12430 |
| Readhead, Ben et al. (2018) Multiscale Analysis of Independent Alzheimer's Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus.; Neuron, 99: 64-82.e7 |
|
GSE5281 GSE9770 |
| Readhead, Benjamin et al. (2018) Expression-based drug screening of neural progenitor cells from individuals with schizophrenia.; Nat Commun, 9: 4412 |
|
GSE119290 |
| Real, Pedro J et al. (2009) Gamma-secretase inhibitors reverse glucocorticoid resistance in T cell acute lymphoblastic leukemia.; Nat Med, 15: 50-8 |
|
GSE11184 GSE7067 |
| Realegeno, Susan et al. (2016) S100A12 Is Part of the Antimicrobial Network against Mycobacterium leprae in Human Macrophages.; PLoS Pathog, 12: e1005705 |
|
GSE82227 |
| Realini, Giulia et al. (2025) N-acetyl-l-cysteine ethyl ester (NACET) induces the transcription factor NRF2 and prevents retinal aging and diabetic retinopathy.; Redox Biol, 88: 103914 |
|
GSE299879 |
| Reavis, Hunter D et al. (2024) Norepinephrine induces anoikis resistance in high-grade serous ovarian cancer precursor cells.; JCI Insight, 9: [no pages] |
|
GSE228234 |
| Rebeaud, J et al. (2025) Gut-derived metabolites drive Th17 cell pathogenicity in multiple sclerosis.; Cell Rep, 44: 116326 |
|
GSE282316 |
| Recinos, Adrian et al. (2004) Liver gene expression associated with diet and lesion development in atherosclerosis-prone mice: induction of components of alternative complement pathway.; Physiol Genomics, 19: 131-42 |
|
GSE363 |
| Recouvreux, Maria Victoria et al. (2020) Glutamine depletion regulates Slug to promote EMT and metastasis in pancreatic cancer.; J Exp Med, 217: [no pages] |
|
GSE150874 |
| Recuero, Enrique et al. (2023) Novel Mouse Cell Lines and In Vivo Models for Human High-Grade Neuroendocrine Lung Carcinoma, Small Cell Lung Carcinoma (SCLC), and Large Cell Neuroendocrine Carcinoma (LCNEC).; Int J Mol Sci, 24: [no pages] |
|
GSE242422 |
| Reda, Anas et al. (2024) Role of the histone variant H2A.Z.1 in memory, transcription, and alternative splicing is mediated by lysine modification.; Neuropsychopharmacology, [no vol.]: [no pages] |
|
GSE242179 |
| Reddington, James P et al. (2013) Redistribution of H3K27me3 upon DNA hypomethylation results in de-repression of Polycomb target genes.; Genome Biol, 14: R25 |
|
GSE44277 GSE44276 |
| Reddy, Adarsh S et al. (2016) A Comprehensive Analysis of Cell Type-Specific Nuclear RNA From Neurons and Glia of the Brain.; Biol Psychiatry, [no vol.]: [no pages] |
|
GSE73391 |
| Reddy, Akhilesh B et al. (2007) Glucocorticoid signaling synchronizes the liver circadian transcriptome.; Hepatology, 45: 1478-88 |
|
GSE564 |
| Reddy, Naveen C et al. (2021) CHARGE syndrome protein CHD7 regulates epigenomic activation of enhancers in granule cell precursors and gyrification of the cerebellum.; Nat Commun, 12: 5702 |
|
GSE164360.1 |
| Reddy, Padmalatha S et al. (2008) Mapping similarities in mTOR pathway perturbations in mouse lupus nephritis models and human lupus nephritis.; Arthritis Res Ther, 10: R127 |
|
GSE12024 |
| Redin, Esther et al. (2024) SMARCA4 controls state plasticity in small cell lung cancer through regulation of neuroendocrine transcription factors and REST splicing.; J Hematol Oncol, 17: 58 |
|
GSE256347 |
| Ree, Anne Hansen et al. (2013) Biomarkers of histone deacetylase inhibitor activity in a phase 1 combined-modality study with radiotherapy.; PLoS One, 9: e89750 |
|
GSE46703 |
| Reece, Joshua J et al. (2006) Innate immune responses to lung-stage helminth infection induce alternatively activated alveolar macrophages.; Infect Immun, 74: 4970-81 |
|
GSE3414 |
| Reece, Joshua J et al. (2008) Hookworm-induced persistent changes to the immunological environment of the lung.; Infect Immun, 76: 3511-24 |
|
GSE5555 |
| Reed, Karen R et al. (2015) Hunk/Mak-v is a negative regulator of intestinal cell proliferation.; BMC Cancer, 15: 110 |
|
GSE65461 |
| Reed, Xylena et al. (2021) Transcriptional signatures in iPSC-derived neurons are reproducible across labs when differentiation protocols are closely matched.; Stem Cell Res, 56: 102558 |
|
GSE167051.1 GSE167051.2 |
| Reemst, Kitty et al. (2022) Early-life stress lastingly impacts microglial transcriptome and function under basal and immune-challenged conditions.; Transl Psychiatry, 12: 507 |
|
GSE207067 |
| Reen, Rashmeet K et al. (2007) Effects of phenylethyl isothiocyanate on early molecular events in N-nitrosomethylbenzylamine-induced cytotoxicity in rat esophagus.; Cancer Res, 67: 6484-92 |
|
GSE6917 |
| Rees, D Aled et al. (2010) Adenosine regulates thrombomodulin and endothelial protein C receptor expression in folliculostellate cells of the pituitary gland.; Purinergic Signal, 6: 19-29 |
|
GSE15564 |
| Reese, Tiffany A et al. (2016) Sequential Infection with Common Pathogens Promotes Human-like Immune Gene Expression and Altered Vaccine Response.; Cell Host Microbe, 19: 713-9 |
|
GSE79466 |
| Reeve, J et al. (2013) Molecular diagnosis of T cell-mediated rejection in human kidney transplant biopsies.; Am J Transplant, 13: 645-55 |
|
GSE36059 |
| Refaat, Alaa et al. (2011) Distinct roles of transforming growth factor-beta-activated kinase 1 (TAK1)-c-Rel and interferon regulatory factor 4 (IRF4) pathways in human T cell lymphotropic virus 1-transformed T helper 17 cells producing interleukin-9.; J Biol Chem, 286: 21092-9 |
|
GSE22036 |
| Regales, Lucia et al. (2009) Dual targeting of EGFR can overcome a major drug resistance mutation in mouse models of EGFR mutant lung cancer.; J Clin Invest, 119: 3000-10 |
|
GSE17373 |
| Regan, Philip et al. (2024) Epigallocatechin Gallate Modulates Microglia Phenotype to Suppress Pro-inflammatory Signalling Cues and Inhibit Phagocytosis.; Mol Neurobiol, 61: 4441-4453 |
|
GSE208144 |
| Regateiro, Frederico S et al. (2012) Foxp3 expression is required for the induction of therapeutic tissue tolerance.; J Immunol, 189: 3947-56 |
|
GSE39529 |
| Rege, Juilee et al. (2023) Somatic SLC30A1 mutations altering zinc transporter ZnT1 cause aldosterone-producing adenomas and primary aldosteronism.; Nat Genet, 55: 1623-1631 |
|
GSE236437 |
| Rege, Shraddha D et al. (2019) Brain Trauma Disrupts Hepatic Lipid Metabolism: Blame It on Fructose?; Mol Nutr Food Res, 63: e1801054 |
|
GSE116980 |
| Regent, Florian et al. (2022) Nicotinamide Promotes Formation of Retinal Organoids From Human Pluripotent Stem CellsviaEnhanced Neural Cell Fate Commitment.; Front Cell Neurosci, 16: 878351 |
|
GSE164884 |
| Regnier-Golanov, Angelique S et al. (2021) Hippocampal Transcriptome Changes After Subarachnoid Hemorrhage in Mice.; Front Neurol, 12: 691631 |
|
GSE167110 |
| Rehmani, Taha et al. (2024) SLMAP3 is essential for neurulation through mechanisms involving cytoskeletal elements, ABP, and PCP.; Life Sci Alliance, 7: [no pages] |
|
GSE230748 |
| Rehnström, Mimmi et al. (2020) Transcriptome profiling revealed early vascular smooth muscle cell gene activation following focal ischemic stroke in female rats - comparisons with males.; BMC Genomics, 21: 883 |
|
GSE162072 |
| Reich, Kimberly A et al. (2010) Forty-eight hours of unloading and 24 h of reloading lead to changes in global gene expression patterns related to ubiquitination and oxidative stress in humans.; J Appl Physiol (1985), 109: 1404-15 |
|
GSE21497 |