List of all 20,076 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Shafik, Andrew M et al. (2021) N6-methyladenosine dynamics in neurodevelopment and aging, and its potential role in Alzheimer's disease.; Genome Biol, 22: 17 |
|
GSE144032.1.2 GSE144032.1.3 GSE144032.1.4 |
| Shah, Ami et al. (2021) Olfactory expression of trace amine-associated receptors requires cooperative cis-acting enhancers.; Nat Commun, 12: 3797 |
|
GSE171241 |
| Shah, Faraaz A et al. (2024) Lung Epithelium Releases Growth Differentiation Factor 15 in Response to Pathogen-mediated Injury.; Am J Respir Cell Mol Biol, 70: 379-391 |
|
GSE253234 |
| Shah, Kushani et al. (2020) A chromatin modulator sustains self-renewal and enables differentiation of postnatal neural stem and progenitor cells.; J Mol Cell Biol, 12: 4-16 |
|
GSE114091 |
| Shah, Mithun Vinod et al. (2008) Molecular profiling of LGL leukemia reveals role of sphingolipid signaling in survival of cytotoxic lymphocytes.; Blood, 112: 770-81 |
|
GSE10631 |
| Shah, Neel et al. (2017) Regulation of the glucocorticoid receptor via a BET-dependent enhancer drives antiandrogen resistance in prostate cancer.; Elife, 6: [no pages] |
|
GSE103449 |
| Shah, Parisha P et al. (2013) Lamin B1 depletion in senescent cells triggers large-scale changes in gene expression and the chromatin landscape.; Genes Dev, 27: 1787-99 |
|
GSE36640 |
| Shah, Parisha P et al. (2023) An atlas of lamina-associated chromatin across twelve human cell types reveals an intermediate chromatin subtype.; Genome Biol, 24: 16 |
|
GSE155244 |
| Shah, S M et al. (2009) Expression of Wnt receptors in adult spiral ganglion neurons: frizzled 9 localization at growth cones of regenerating neurites.; Neuroscience, 164: 478-87 |
|
GSE12810 |
| Shah, Shruti D et al. (2023) Syngeneic model of carcinogen-induced tumor mimics basal/squamous, stromal-rich, and neuroendocrine molecular and immunological features of muscle-invasive bladder cancer.; Front Oncol, 13: 1120329 |
|
GSE220999 |
| Shah, Sneha et al. (2023) Antisense oligonucleotide rescue of CGG expansion-dependentFMR1mis-splicing in fragile X syndrome restores FMRP.; Proc Natl Acad Sci U S A, 120: e2302534120 |
|
GSE202177 |
| Shah, Sohela et al. (2013) A recurrent germline PAX5 mutation confers susceptibility to pre-B cell acute lymphoblastic leukemia.; Nat Genet, 45: 1226-31 |
|
GSE45260 |
| Shah, Zahir et al. (2025) RUNX1 is a key inducer of human hematopoiesis controlling non-hematopoietic mesodermal development.; Stem Cells, 43: [no pages] |
|
GSE232147 |
| Shahbaz, Shima et al. (2025) Upregulation of olfactory receptors and neuronal-associated genes highlights complex immune and neuronal dysregulation in Long COVID patients.; Brain Behav Immun, 124: 97-114 |
|
GSE270045 |
| Shahbazi, Ebrahim et al. (2016) Conversion of Human Fibroblasts to Stably Self-Renewing Neural Stem Cells with a Single Zinc-Finger Transcription Factor.; Stem Cell Reports, 6: 539-551 |
|
GSE64882 |
| Shahbazi, Jeyran et al. (2016) The Bromodomain Inhibitor JQ1 and the Histone Deacetylase Inhibitor Panobinostat Synergistically Reduce N-Myc Expression and Induce Anticancer Effects.; Clin Cancer Res, 22: 2534-44 |
|
GSE68690 |
| Shahin, Weam S et al. (2023) Redox-dependent Igfbp2 signaling controls Brca1 DNA damage response to govern neural stem cell fate.; Nat Commun, 14: 444 |
|
GSE221955 |
| Shahmanesh, Mohsen et al. (2015) Differential adipose tissue gene expression profiles in abacavir treated patients that may contribute to the understanding of cardiovascular risk: a microarray study.; PLoS One, 10: e0117164 |
|
GSE62117 |
| Shahraz, Anahita et al. (2021) Phagocytosis-related NADPH oxidase 2 subunit gp91phox contributes to neurodegeneration after repeated systemic challenge with lipopolysaccharides.; Glia, 69: 137-150 |
|
GSE153369 |
| Shaikh, Nadeem et al. (2022) Replication stress generates distinctive landscapes of DNA copy number alterations and chromosome scale losses.; Genome Biol, 23: 223 |
|
GSE168689 |
| Shaikh, Shafiq et al. (2025) Deciphering the interplay between SETD2 mediated H3K36me3 and RNA N6-methyladenosine in clear cell renal cell carcinoma (ccRCC).; Epigenetics, 20: 2456418 |
|
GSE276371 |
| Shaker, Mohammed R et al. (2020) Anteroposterior Wnt-RA Gradient Defines Adhesion and Migration Properties of Neural Progenitors in Developing Spinal Cord.; Stem Cell Reports, 15: 898-911 |
|
GSE132089 |
| Shaker, Mohammed R et al. (2021) Klotho inhibits neuronal senescence in human brain organoids.; NPJ Aging Mech Dis, 7: 18 |
|
GSE171719 |
| Shakhova, Olga et al. (2012) Sox10 promotes the formation and maintenance of giant congenital naevi and melanoma.; Nat Cell Biol, 14: 882-90 |
|
GSE37059 |
| Shaknovich, Rita et al. (2010) DNA methylation signatures define molecular subtypes of diffuse large B-cell lymphoma.; Blood, 116: e81-9 |
|
GSE23501 |
| Shalhoub, V et al. (2010) Chondro/osteoblastic and cardiovascular gene modulation in human artery smooth muscle cells that calcify in the presence of phosphate and calcitriol or paricalcitol.; J Cell Biochem, 111: 911-21 |
|
GSE11917 |
| Shaliman, Dilibaerguli et al. (2022) The PRC2 molecule EED is a target of epigenetic therapy for neuroblastoma.; Eur J Cell Biol, 101: 151238 |
|
GSE183369 |
| Shalom-Barak, Tali et al. (2012) Placental PPAR? regulates spatiotemporally diverse genes and a unique metabolic network.; Dev Biol, 372: 143-55 |
|
GSE39233 |
| Shalova, Irina N et al. (2015) Human monocytes undergo functional re-programming during sepsis mediated by hypoxia-inducible factor-1?.; Immunity, 42: 484-98 |
|
GSE46955 |
| Shames, David S et al. (2006) A genome-wide screen for promoter methylation in lung cancer identifies novel methylation markers for multiple malignancies.; PLoS Med, 3: e486 |
|
GSE5816 |
| Shamir, Ron et al. (2017) Analysis of blood-based gene expression in idiopathic Parkinson disease.; Neurology, 89: 1676-1683 |
|
GSE99039 |
| Shams, Ahmed S et al. (2022) The chemokine receptor CXCR4 regulates satellite cell activation, early expansion, and self-renewal, in response to skeletal muscle injury.; Front Cell Dev Biol, 10: 949532 |
|
GSE205015 |
| Shan, Xiaoyin et al. (2017) Transcriptional and Cell Cycle Alterations Mark Aging of Primary Human Adipose-Derived Stem Cells.; Stem Cells, 35: 1392-1401 |
|
GSE86244 |
| Shan, Xiu et al. (2010) Altered distributions of Gemini of coiled bodies and mitochondria in motor neurons of TDP-43 transgenic mice.; Proc Natl Acad Sci U S A, 107: 16325-30 |
|
GSE22351 |
| Shan, Xiwei et al. (2024) Fully defined NGN2 neuron protocol reveals diverse signatures of neuronal maturation.; Cell Rep Methods, 4: 100858 |
|
GSE273553 GSE266359 GSE244369 |
| Shan, Yongli et al. (2020) JMJD3 and UTX determine fidelity and lineage specification of human neural progenitor cells.; Nat Commun, 11: 382 |
|
GSE118999 |
| Shand, Jessica C et al. (2010) Differential gene expression in acute lymphoblastic leukemia cells surviving allogeneic transplant.; Cancer Immunol Immunother, 59: 1633-44 |
|
GSE17497 |
| Shang, Hongkai et al. (2021) Characterization of the Potential Role of NTPCR in Epithelial Ovarian Cancer by Integrating Transcriptomic and Metabolomic Analysis.; Front Genet, 12: 695245 |
|
GSE178486 |
| Shang, Qi et al. (2022) Myristic acid alleviates hippocampal aging correlated with GABAergic signaling.; Front Nutr, 9: 907526 |
|
GSE201029 |
| Shang, Yuan et al. (2020) Evidence in support of chromosomal sex influencing plasma based metabolome vs APOE genotype influencing brain metabolome profile in humanized APOE male and female mice.; PLoS One, 15: e0225392 |
|
GSE140205 |
| Shankar, Jay et al. (2010) Pseudopodial actin dynamics control epithelial-mesenchymal transition in metastatic cancer cells.; Cancer Res, 70: 3780-90 |
|
GSE20089 |
| Shankar, Kartik et al. (2006) Physiologic and genomic analyses of nutrition-ethanol interactions during gestation: Implications for fetal ethanol toxicity.; Exp Biol Med (Maywood), 231: 1379-97 |
|
GSE3740 |
| Shankavaram, Uma et al. (2013) Genotype and tumor locus determine expression profile of pseudohypoxic pheochromocytomas and paragangliomas.; Neoplasia, 15: 435-47 |
|
GSE39716 |
| Shanle, Erin K et al. (2013) Research resource: global identification of estrogen receptor β target genes in triple negative breast cancer cells.; Mol Endocrinol, 27: 1762-75 |
|
GSE71960 |
| Shanley, Thomas P et al. (2007) Genome-level longitudinal expression of signaling pathways and gene networks in pediatric septic shock.; Mol Med, 13: 495-508 |
|
GSE8121 |
| Shao, Anwen et al. (2023) The L27 Domain of MPP7 enhances TAZ-YY1 Cooperation to Renew Muscle Stem Cells.; bioRxiv, [no vol.]: [no pages] |
|
GSE241340 |
| Shao, Chunbo et al. (2011) Integrated, genome-wide screening for hypomethylated oncogenes in salivary gland adenoid cystic carcinoma.; Clin Cancer Res, 17: 4320-30 |
|
GSE25746 |
| Shao, Diane D et al. (2014) KRAS and YAP1 converge to regulate EMT and tumor survival.; Cell, 158: 171-84 |
|
GSE55942 GSE56175 |
| Shao, Luying et al. (2024) Active natural compounds perturb the melanoma risk-gene network.; G3 (Bethesda), 14: [no pages] |
|
GSE246383 |
| Shao, Meiyu et al. (2024) Transcriptome signatures of the medial prefrontal cortex underlying GABAergic control of resilience to chronic stress exposure.; Mol Psychiatry, [no vol.]: [no pages] |
|
GSE272496 |
| Shao, Yingyao et al. (2021) Antisense oligonucleotide therapy in a humanized mouse model ofMECP2duplication syndrome.; Sci Transl Med, 13: [no pages] |
|
GSE151222 |
| Shao, Zhicheng et al. (2019) Dysregulated protocadherin-pathway activity as an intrinsic defect in induced pluripotent stem cell-derived cortical interneurons from subjects with schizophrenia.; Nat Neurosci, 22: 229-242 |
|
GSE121376 GSE118313 |
| Shao, Zhihua et al. (2017) Spontaneous generation of a novel foetal human retinal pigment epithelium (RPE) cell line available for investigation on phagocytosis and morphogenesis.; Cell Prolif, 50: [no pages] |
|
GSE102875 |
| Shapira, Guy et al. (2023) Hippocampal differential expression underlying the neuroprotective effect of delta-9-tetrahydrocannabinol microdose on old mice.; Front Neurosci, 17: 1182932 |
|
GSE235969 |
| Shapira, Guy et al. (2025) ADNP is essential for sex-dependent hippocampal neurogenesis, through male unfolded protein response and female mitochondrial gene regulation.; Mol Psychiatry, 30: 2696-2706 |
|
GSE272331 |
| Shapira, Sagi D et al. (2009) A physical and regulatory map of host-influenza interactions reveals pathways in H1N1 infection.; Cell, 139: 1255-67 |
|
GSE19392 |
| Sharanek, Ahmad et al. (2021) Transcriptional control of brain tumor stem cells by a carbohydrate binding protein.; Cell Rep, 36: 109647 |
|
GSE180981 |
| Sharma, Abhijeet et al. (2019) Divergent roles of astrocytic versus neuronal EAAT2 deficiency on cognition and overlap with aging and Alzheimer's molecular signatures.; Proc Natl Acad Sci U S A, 116: 21800-21811 |
|
GSE169083 |
| Sharma, Aditi et al. (2021) E-cigarettes compromise the gut barrier and trigger inflammation.; iScience, 24: 102035 |
|
GSE161521 |
| Sharma, Ali et al. (2016) Principles Governing DNA Methylation during Neuronal Lineage and Subtype Specification.; J Neurosci, 36: 1711-22 |
|
GSE72700 |
| Sharma, Ankita et al. (2021) Epigenetic Regulation of the Wnt/β-Catenin Signaling Pathway in Cancer.; Front Genet, 12: 681053 |
|
GSE255967 |
| Sharma, Anu et al. (2005) Assessing natural variations in gene expression in humans by comparing with monozygotic twins using microarrays.; Physiol Genomics, 21: 117-23 |
|
GSE928 |
| Sharma, Arun et al. (2017) High-throughput screening of tyrosine kinase inhibitor cardiotoxicity with human induced pluripotent stem cells.; Sci Transl Med, 9: [no pages] |
|
GSE88944 |
| Sharma, Ashok et al. (2010) Hepatic gene expression profiling reveals key pathways involved in leptin-mediated weight loss in ob/ob mice.; PLoS One, 5: e12147 |
|
GSE20878 |
| Sharma, Manish et al. (2019) Rhes, a striatal-enriched protein, promotes mitophagy via Nix.; Proc Natl Acad Sci U S A, 116: 23760-23771 |
|
GSE150990 |
| Sharma, Mukesh K et al. (2007) Distinct genetic signatures among pilocytic astrocytomas relate to their brain region origin.; Cancer Res, 67: 890-900 |
|
GSE5675 GSE5582 |
| Sharma, Naomi L et al. (2013) The androgen receptor induces a distinct transcriptional program in castration-resistant prostate cancer in man.; Cancer Cell, 23: 35-47 |
|
GSE28680 |
| Sharma, Naomi L et al. (2014) The ETS family member GABPα modulates androgen receptor signalling and mediates an aggressive phenotype in prostate cancer.; Nucleic Acids Res, 42: 6256-69 |
|
GSE49083.2 GSE49083.1 |
| Sharma, Nidhi et al. (2025) In-depth patient-specific analysis of tumor heterogeneity in melanoma brain metastasis: Insights from spatial transcriptomics and multi-region bulk sequencing.; Transl Oncol, 59: 102468 |
|
GSE275731 |
| Sharma, Ruchi et al. (2021) Epithelial phenotype restoring drugs suppress macular degeneration phenotypes in an iPSC model.; Nat Commun, 12: 7293 |
|
GSE185310 |
| Sharma, Salil et al. (2018) Presymptomatic change in microRNAs modulates Tau pathology.; Sci Rep, 8: 9251 |
|
GSE107183 GSE107167 |
| Sharma, Srilakshmi M et al. (2009) Insights in to the pathogenesis of axial spondyloarthropathy based on gene expression profiles.; Arthritis Res Ther, 11: R168 |
|
GSE18781 |
| Sharma, Tasneem P et al. (2014) Optic nerve crush induces spatial and temporal gene expression patterns in retina and optic nerve of BALB/cJ mice.; Mol Neurodegener, 9: 14 |
|
GSE44708 GSE44707 |
| Sharma, Vinay Kumar et al. (2023) Characterization of serotonin-5-HTR1E signaling pathways and its role in cell survival.; FASEB J, 37: e22925 |
|
GSE223836 |
| Sharma, Vishakha et al. (2013) DUX4 differentially regulates transcriptomes of human rhabdomyosarcoma and mouse C2C12 cells.; PLoS One, 8: e64691 |
|
GSE45854.1 GSE45854.2 |
| Sharma, Yagya V et al. (2012) Protective gene expression changes elicited by an inherited defect in photoreceptor structure.; PLoS One, 7: e31371 |
|
GSE33134 |
| Sharma-Kuinkel, Batu K et al. (2013) Host gene expression profiling and in vivo cytokine studies to characterize the role of linezolid and vancomycin in methicillin-resistant Staphylococcus aureus (MRSA) murine sepsis model.; PLoS One, 8: e60463 |
|
GSE38531 |
| Sharon, Gil et al. (2019) Human Gut Microbiota from Autism Spectrum Disorder Promote Behavioral Symptoms in Mice.; Cell, 177: 1600-1618.e17 |
|
GSE109827 |
| Sharov, Alexei A et al. (2011) Responsiveness of genes to manipulation of transcription factors in ES cells is associated with histone modifications and tissue specificity.; BMC Genomics, 12: 102 |
|
GSE19806 GSE19814 |
| Sharova, Lioudmila V et al. (2009) Database for mRNA half-life of 19 977 genes obtained by DNA microarray analysis of pluripotent and differentiating mouse embryonic stem cells.; DNA Res, 16: 45-58 |
|
GSE13609 |
| Sharpe, Amanda L et al. (2022) Repeated cocaine or methamphetamine treatment alters astrocytic CRF2 and GLAST expression in the ventral midbrain.; Addict Biol, 27: e13120 |
|
GSE184497 |
| Shastri, Anjali J et al. (2014) GRA25 is a novel virulence factor of Toxoplasma gondii and influences the host immune response.; Infect Immun, 82: 2595-605 |
|
GSE56534 |
| Shats, Igor et al. (2011) Using a stem cell-based signature to guide therapeutic selection in cancer.; Cancer Res, 71: 1772-80 |
|
GSE24716 GSE24578 |
| Shats, Igor et al. (2013) FOXO transcription factors control E2F1 transcriptional specificity and apoptotic function.; Cancer Res, 73: 6056-67 |
|
GSE39136 |
| Shats, Igor et al. (2020) Bacteria Boost Mammalian Host NAD Metabolism by Engaging the Deamidated Biosynthesis Pathway.; Cell Metab, 31: 564-579.e7 |
|
GSE127750 |
| Shaw, Laura A et al. (2016) Id2 reinforces TH1 differentiation and inhibits E2A to repress TFH differentiation.; Nat Immunol, 17: 834-43 |
|
GSE74854 |
| Shaw, Timothy I et al. (2021) Integrative network analysis reveals USP7 haploinsufficiency inhibits E-protein activity in pediatric T-lineage acute lymphoblastic leukemia (T-ALL).; Sci Rep, 11: 5154 |
|
GSE148522 |