List of all 20,076 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Shaykhiev, Renat et al. (2009) Smoking-dependent reprogramming of alveolar macrophage polarization: implication for pathogenesis of chronic obstructive pulmonary disease.; J Immunol, 183: 2867-83 |
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GSE13896 |
| Shcherbakov, Dimitri et al. (2021) Mitochondrial Mistranslation in Brain Provokes a Metabolic Response Which Mitigates the Age-Associated Decline in Mitochondrial Gene Expression.; Int J Mol Sci, 22: [no pages] |
|
GSE121395 |
| Shea, Jeremy M et al. (2024) MICROGLIA AGING IN THE HIPPOCAMPUS ADVANCES THROUGH INTERMEDIATE STATES THAT DRIVE INFLAMMATORY ACTIVATION AND COGNITIVE DECLINE.; bioRxiv, [no vol.]: [no pages] |
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GSE179611 GSE190007 |
| Sheahan, Timothy et al. (2014) Interferon lambda alleles predict innate antiviral immune responses and hepatitis C virus permissiveness.; Cell Host Microbe, 15: 190-202 |
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GSE54648 |
| Shearstone, Jeffrey R et al. (2006) Accurate and precise transcriptional profiles from 50 pg of total RNA or 100 flow-sorted primary lymphocytes.; Genomics, 88: 111-21 |
|
GSE5130 |
| Sheehan, Charles J et al. (2020) Dosage-dependent requirements ofMagohfor cortical interneuron generation and survival.; Development, 147: [no pages] |
|
GSE142422 |
| Sheehan, Patrick W et al. (2024) A glial circadian gene expression atlas reveals cell type and disease-specific reprogramming in response to amyloid pathology or aging.; bioRxiv, [no vol.]: [no pages] |
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GSE261698 |
| Sheeler, Carrie et al. (2024) Expanded ATXN1 alters transcription and calcium signaling in SCA1 human motor neurons differentiated from induced pluripotent stem cells.; Neurobiol Dis, 201: 106673 |
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GSE267449 |
| Sheffer, Michal et al. (2009) Association of survival and disease progression with chromosomal instability: a genomic exploration of colorectal cancer.; Proc Natl Acad Sci U S A, 106: 7131-6 |
|
GSE41258 |
| Sheftel, Celeste M et al. (2022) Impact of Fluoxetine Treatment and Folic Acid Supplementation on the Mammary Gland Transcriptome During Peak Lactation.; Front Pharmacol, 13: 828735 |
|
GSE188845 |
| Shehadeh, Lina A et al. (2010) SRRM2, a potential blood biomarker revealing high alternative splicing in Parkinson's disease.; PLoS One, 5: e9104 |
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GSE18838 |
| Shehata, M et al. (2010) Sequential gene expression profiling during treatment for identification of predictive markers and novel therapeutic targets in chronic lymphocytic leukemia.; Leukemia, 24: 2122-7 |
|
GSE15490 |
| Shehata, Mona et al. (2012) Phenotypic and functional characterisation of the luminal cell hierarchy of the mammary gland.; Breast Cancer Res, 14: R134 |
|
GSE35399 |
| Sheikh, Bilal N et al. (2020) Neural metabolic imbalance induced by MOF dysfunction triggers pericyte activation and breakdown of vasculature.; Nat Cell Biol, 22: 828-841 |
|
GSE138981.2 GSE138981.1 |
| Sheikh, Muhammad Abid et al. (2023) O-GlcNAc transferase promotes glioblastoma by modulating genes responsible for cell survival, invasion, and inflammation.; J Biol Chem, 299: 105235 |
|
GSE234473 |
| Shema, Reut et al. (2015) Synthetic lethal screening in the mammalian central nervous system identifies Gpx6 as a modulator of Huntington's disease.; Proc Natl Acad Sci U S A, 112: 268-72 |
|
GSE64140 |
| Shen, Chao et al. (2020) RNA Demethylase ALKBH5 Selectively Promotes Tumorigenesis and Cancer Stem Cell Self-Renewal in Acute Myeloid Leukemia.; Cell Stem Cell, 27: 64-80.e9 |
|
GSE144959 |
| Shen, Chen et al. (2015) NSD3-Short Is an Adaptor Protein that Couples BRD4 to the CHD8 Chromatin Remodeler.; Mol Cell, 60: 847-59 |
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GSE71185 |
| Shen, Chuan et al. (2011) Genetic and functional studies implicate HIF1? as a 14q kidney cancer suppressor gene.; Cancer Discov, 1: 222-35 |
|
GSE27415 |
| Shen, Danmin et al. (2022) Ferroptosis in oligodendrocyte progenitor cells mediates white matter injury after hemorrhagic stroke.; Cell Death Dis, 13: 259 |
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GSE197104 |
| Shen, Jing et al. (2018) A kinome-wide RNAi screen identifies ALK as a target to sensitize neuroblastoma cells for HDAC8-inhibitor treatment.; Cell Death Differ, 25: 2053-2070 |
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GSE110817 |
| Shen, Jingjing et al. (2025) Behavioral Abnormalities, Cognitive Impairments, Synaptic Deficits, and Gene Replacement Therapy in a CRISPR Engineered Rat Model of 5p15.2 Deletion Associated With Cri du Chat Syndrome.; Adv Sci (Weinh), 12: e2415224 |
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GSE273113 |
| Shen, Kimberle et al. (2021) Multiple sclerosis risk gene Mertk is required for microglial activation and subsequent remyelination.; Cell Rep, 34: 108835 |
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GSE148677 |
| Shen, Kui et al. (2012) Cell line derived multi-gene predictor of pathologic response to neoadjuvant chemotherapy in breast cancer: a validation study on US Oncology 02-103 clinical trial.; BMC Med Genomics, 5: 51 |
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GSE42822 |
| Shen, Mengting et al. (2022) Hepatic ARID3A facilitates liver cancer malignancy by cooperating with CEP131 to regulate an embryonic stem cell-like gene signature.; Cell Death Dis, 13: 732 |
|
GSE193726 |
| Shen, Ping et al. (2014) IL-35-producing B cells are critical regulators of immunity during autoimmune and infectious diseases.; Nature, 507: 366-70 |
|
GSE35998 |
| Shen, Ping et al. (2023) Toll-like receptors control the accumulation of neutrophils in lymph nodes that expand CD4+T cells during experimental autoimmune encephalomyelitis.; Eur J Immunol, 53: e2250059 |
|
GSE205600 |
| Shen, Qian et al. (2025) TCF1 and LEF1 promote B-1a cell homeostasis and regulatory function.; Nature, 646: 442-451 |
|
GSE290505 |
| Shen, Susan Q et al. (2014) Hybrid mice reveal parent-of-origin and Cis- and trans-regulatory effects in the retina.; PLoS One, 9: e109382 |
|
GSE60545 |
| Shen, Ting et al. (2025) Protein arginine methyltransferase 7 linked to schizophrenia through regulation of neural progenitor cell proliferation and differentiation.; Cell Rep, 44: 115279 |
|
GSE284672 |
| Shen, Xianli et al. (2022) Definition of a mouse microglial subset that regulates neuronal development and proinflammatory responses in the brain.; Proc Natl Acad Sci U S A, 119: [no pages] |
|
GSE190713 |
| Shen, Xiaohua et al. (2008) EZH1 mediates methylation on histone H3 lysine 27 and complements EZH2 in maintaining stem cell identity and executing pluripotency.; Mol Cell, 32: 491-502 |
|
GSE12982 |
| Shen, Xiaohua et al. (2009) Jumonji modulates polycomb activity and self-renewal versus differentiation of stem cells.; Cell, 139: 1303-14 |
|
GSE19165 |
| Shen, Yin et al. (2012) A map of the cis-regulatory sequences in the mouse genome.; Nature, 488: 116-20 |
|
GSE29278 |
| Shen, Ying et al. (2015) ASSIGN: context-specific genomic profiling of multiple heterogeneous biological pathways.; Bioinformatics, 31: 1745-53 |
|
GSE59765 |
| Shen, Ying et al. (2020) Reduction of Liver Metastasis Stiffness Improves Response to Bevacizumab in Metastatic Colorectal Cancer.; Cancer Cell, 37: 800-817.e7 |
|
GSE145429 |
| Shen, Yuntian et al. (2021) Activation of the ATF6 (Activating Transcription Factor 6) Signaling Pathway in Neurons Improves Outcome After Cardiac Arrest in Mice.; J Am Heart Assoc, 10: e020216 |
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GSE160259 |
| Shen, Ziyi et al. (2024) Neuromolecular and behavioral effects of cannabidiol on depressive-associated behaviors and neuropathic pain conditions in mice.; Neuropharmacology, 261: 110153 |
|
GSE262952 |
| Shen, Zuolian et al. (2024) Oct4 redox sensitivity potentiates reprogramming and differentiation.; bioRxiv, [no vol.]: [no pages] |
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GSE241332 |
| Shen-Orr, Shai S et al. (2010) Cell type-specific gene expression differences in complex tissues.; Nat Methods, 7: 287-9 |
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GSE19830 GSE20300 |
| Sheng, Kit-Yeng et al. (2022) A region-dependent allele-biased expression of Dopa decarboxylase in mouse brain.; Front Cell Dev Biol, 10: 1078927 |
|
GSE171581 |
| Sheng, Y et al. (2016) Activation of wnt/β-catenin signaling blocks monocyte-macrophage differentiation through antagonizing PU.1-targeted gene transcription.; Leukemia, 30: 2106-2109 |
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GSE79932 |
| Sheng, Yue et al. (2021) Role of c-Myc haploinsufficiency in the maintenance of HSCs in mice.; Blood, 137: 610-623 |
|
GSE156361 |
| Shenoy, Archana et al. (2015) Let-7 and miR-125 cooperate to prime progenitors for astrogliogenesis.; EMBO J, 34: 1180-94 |
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GSE64637 |
| Sheppard, Karen E et al. (2013) Synergistic inhibition of ovarian cancer cell growth by combining selective PI3K/mTOR and RAS/ERK pathway inhibitors.; Eur J Cancer, 49: 3936-44 |
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GSE43765 |
| Sheppard, Sarah E et al. (2023) Mechanism of KMT5B haploinsufficiency in neurodevelopment in humans and mice.; Sci Adv, 9: eade1463 |
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GSE184953 |
| Sheridan, Julie M et al. (2015) A pooled shRNA screen for regulators of primary mammary stem and progenitor cells identifies roles for Asap1 and Prox1.; BMC Cancer, 15: 221 |
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GSE63310 |
| Sherman, Mara H et al. (2014) Vitamin D receptor-mediated stromal reprogramming suppresses pancreatitis and enhances pancreatic cancer therapy.; Cell, 159: 80-93 |
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GSE43770.1 GSE43770.2 |
| Sherpa, Mingma Thsering et al. (2021) Has2Regulates the Development of Ovalbumin-Induced Airway Remodeling and Steroid Insensitivity in Mice.; Front Immunol, 12: 770305 |
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GSE181966 |
| Sherwood, Richard I et al. (2009) Transcriptional dynamics of endodermal organ formation.; Dev Dyn, 238: 29-42 |
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GSE13040 |
| Sheth, S S et al. (2006) Hepatocellular carcinoma in Txnip-deficient mice.; Oncogene, 25: 3528-36 |
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GSE2127 |
| Shetty, Ranjit S et al. (2005) Transcriptional changes during neuronal death and replacement in the olfactory epithelium.; Mol Cell Neurosci, 30: 90-107 |
|
GSE2437 |
| Sheu, J J-C et al. (2013) LRIG1 modulates aggressiveness of head and neck cancers by regulating EGFR-MAPK-SPHK1 signaling and extracellular matrix remodeling.; Oncogene, [no vol.]: [no pages] |
|
GSE37991 |
| Shi, Charlie Y et al. (2023) ZSWIM8 destabilizes many murine microRNAs and is required for proper embryonic growth and development.; Genome Res, 33: 1482-1496 |
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GSE231447 |
| Shi, Feng-Tao et al. (2017) Notch signaling is significantly suppressed in basal cell carcinomas and activation induces basal cell carcinoma cell apoptosis.; Mol Med Rep, 15: 1441-1454 |
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GSE12542 |
| Shi, Guangsen et al. (2021) Mutations in Metabotropic Glutamate Receptor 1 Contribute to Natural Short Sleep Trait.; Curr Biol, 31: 13-24.e4 |
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GSE155252 |
| Shi, Hailing et al. (2018) m6A facilitates hippocampus-dependent learning and memory through YTHDF1.; Nature, 563: 249-253 |
|
GSE106607 |
| Shi, J et al. (2013) The Polycomb complex PRC2 supports aberrant self-renewal in a mouse model of MLL-AF9;Nras(G12D) acute myeloid leukemia.; Oncogene, 32: 930-8 |
|
GSE34183 |
| Shi, Jiantao et al. (2024) Impact of c-JUN deficiency on thalamus development in mice and human neural models.; Cell Biosci, 14: 149 |
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GSE260732 GSE243735 |
| Shi, Junhe et al. (2023) L-Arginine Enhances Oral Keratinocyte Proliferation under High-Glucose Conditions via Upregulation ofCYP1A1,SKP2, andSRSF5.; Molecules, 28: [no pages] |
|
GSE223773 |
| Shi, Lei et al. (2018) Modeling the Pathogenesis of Charcot-Marie-Tooth Disease Type 1A Using Patient-Specific iPSCs.; Stem Cell Reports, 10: 120-133 |
|
GSE97851 |
| Shi, Lei et al. (2019) Robust elimination of genome-damaged cells safeguards against brain somatic aneuploidy following Knl1 deletion.; Nat Commun, 10: 2588 |
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GSE114956 |
| Shi, Leming et al. (2010) The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models.; Nat Biotechnol, 28: 827-38 |
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GSE24061 GSE20194 GSE24363 GSE24080 |
| Shi, Lewis Z et al. (2011) HIF1alpha-dependent glycolytic pathway orchestrates a metabolic checkpoint for the differentiation of TH17 and Treg cells.; J Exp Med, 208: 1367-76 |
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GSE29765 |
| Shi, Ligen et al. (2020) Genome-wide transcriptomic analysis of microglia reveals impaired responses in aged mice after cerebral ischemia.; J Cereb Blood Flow Metab, 40: S49-S66 |
|
GSE145265 |
| Shi, Ligen et al. (2021) Treg cell-derived osteopontin promotes microglia-mediated white matter repair after ischemic stroke.; Immunity, 54: 1527-1542.e8 |
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GSE171102 GSE171097 |
| Shi, Lihong et al. (2014) Developmental transcriptome analysis of human erythropoiesis.; Hum Mol Genet, 23: 4528-42 |
|
GSE54602 |
| Shi, Ming et al. (2014) A blood-based three-gene signature for the non-invasive detection of early human hepatocellular carcinoma.; Eur J Cancer, 50: 928-36 |
|
GSE49515 |
| Shi, Tengfei et al. (2024) Bivalent activity of super-enhancer RNA LINC02454 controls 3D chromatin structure and regulates glioma sensitivity to temozolomide.; Cell Death Dis, 15: 6 |
|
GSE229600 |
| Shi, Wei et al. (2015) Transcriptional profiling of mouse B cell terminal differentiation defines a signature for antibody-secreting plasma cells.; Nat Immunol, 16: 663-73 |
|
GSE60927 |
| Shi, Weili et al. (2021) METTL3-Mediated N6-Methyladenosine Modification Is Involved in the Dysregulation of NRIP1 Expression in Down Syndrome.; Front Cell Dev Biol, 9: 621374 |
|
GSE160691 |
| Shi, Xi et al. (2023) Heterozygous deletion of the autism-associated gene CHD8 impairs synaptic function through widespread changes in gene expression and chromatin compaction.; Am J Hum Genet, 110: 1750-1768 |
|
GSE236993 |
| Shi, Xianping et al. (2020) EWS-FLI1 regulates and cooperates with core regulatory circuitry in Ewing sarcoma.; Nucleic Acids Res, 48: 11434-11451 |
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GSE141493.1 |
| Shi, Yixing et al. (2025) Oncogenic fusions converge on shared mechanisms in initiating astroblastoma.; Nature, 643: 551-561 |
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GSE288841 |
| Shi, Yunxing et al. (2023) PRMT3-mediated arginine methylation of IGF2BP1 promotes oxaliplatin resistance in liver cancer.; Nat Commun, 14: 1932 |
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GSE206501 GSE206502 |
| Shi, Zhanquan et al. (2014) Energy metabolism during anchorage-independence. Induction by osteopontin-c.; PLoS One, 9: e105675 |
|
GSE55193 |
| Shi, Zixiao et al. (2016) Conversion of Fibroblasts to Parvalbumin Neurons by One Transcription Factor, Ascl1, and the Chemical Compound Forskolin.; J Biol Chem, 291: 13560-70 |
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GSE79146 |
| Shibahara, Daisuke et al. (2023) TIP60 is required for tumorigenesis in non-small cell lung cancer.; Cancer Sci, 114: 2400-2413 |
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GSE207202 |
| Shibata, Mikihito et al. (2021) Regulation of prefrontal patterning and connectivity by retinoic acid.; Nature, 598: 483-488 |
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GSE142851 |
| Shigeoka, Toshiaki et al. (2016) Dynamic Axonal Translation in Developing and Mature Visual Circuits.; Cell, 166: 181-92 |
|
GSE79352 |
| Shigetomi, Eiji et al. (2024) Disease-relevant upregulation of P2Y1receptor in astrocytes enhances neuronal excitability via IGFBP2.; Nat Commun, 15: 6525 |
|
GSE242450 |
| Shih, Vincent F-S et al. (2012) Control of RelB during dendritic cell activation integrates canonical and noncanonical NF-?B pathways.; Nat Immunol, 13: 1162-70 |
|
GSE34990 |
| Shih, Yu-Tzu et al. (2025) Pro-cognitive restoration of experience-dependent parvalbumin inhibitory neuron plasticity in neurodevelopmental disorders.; Res Sq, [no vol.]: [no pages] |
|
GSE283741 |
| Shim, Hong Seok et al. (2021) Telomerase Reverse Transcriptase Preserves Neuron Survival and Cognition in Alzheimer's Disease Models.; Nat Aging, 1: 1162-1174 |
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GSE163524 GSE163525 |
| Shim, Hong Seok et al. (2024) TERT activation targets DNA methylation and multiple aging hallmarks.; Cell, 187: 4030-4042.e13 |
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GSE231454.2 GSE231454.1 |
| Shima, James E et al. (2004) The murine testicular transcriptome: characterizing gene expression in the testis during the progression of spermatogenesis.; Biol Reprod, 71: 319-30 |
|
GSE926 |
| Shima, Yasuyuki et al. (2016) A Mammalian enhancer trap resource for discovering and manipulating neuronal cell types.; Elife, 5: e13503 |
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GSE75229 |
| Shima, Yuichi et al. (2022) Intronic Enhancer Is Essential forNr5a1Expression in the Pituitary Gonadotrope and for Postnatal Development of Male Reproductive Organs in a Mouse Model.; Int J Mol Sci, 24: [no pages] |
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GSE216468 |