List of all 20,073 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Shimada, Kousuke et al. (2022) Mouse Model of Weak Depression Exhibiting Suppressed cAMP Signaling in the Amygdala, Lower Lipid Catabolism in Liver, and Correlated Gut Microbiota.; Front Behav Neurosci, 16: 841450 |
|
GSE198597 |
| Shimada, Satoshi et al. (2023) Metabolic Responses of Normal Rat Kidneys to a High Salt Intake.; Function (Oxf), 4: zqad031 |
|
GSE224984 |
| Shimazu, Tadahiro et al. (2023) Histidine N1-position-specific methyltransferase CARNMT1 targets C3H zinc finger proteins and modulates RNA metabolism.; Genes Dev, 37: 724-742 |
|
GSE228894 |
| Shimizu, Takanori et al. (2023) CRISPR screening in human trophoblast stem cells reveals both shared and distinct aspects of human and mouse placental development.; Proc Natl Acad Sci U S A, 120: e2311372120 |
|
GSE244254 |
| Shimizu, Takashi et al. (2023) Direct activation of microglia by β-glucosylceramide causes phagocytosis of neurons that exacerbates Gaucher disease.; Immunity, 56: 307-319.e8 |
|
GSE202711 |
| Shimizu, Takeshi et al. (2010) Zinc finger genes Fezf1 and Fezf2 control neuronal differentiation by repressing Hes5 expression in the forebrain.; Development, 137: 1875-85 |
|
GSE21156 |
| Shimizu, Yoshiko et al. (2018) Genetic deletion of sphingosine kinase 1 suppresses mouse breast tumor development in an HER2 transgenic model.; Carcinogenesis, 39: 47-55 |
|
GSE80413 |
| Shimogori, Tomomi et al. (2010) A genomic atlas of mouse hypothalamic development.; Nat Neurosci, [no vol.]: [no pages] |
|
GSE21278 |
| Shimomura, Kana et al. (2023) Sleeping Beauty transposon mutagenesis identified genes and pathways involved in inflammation-associated colon tumor development.; Nat Commun, 14: 6514 |
|
GSE217169 |
| Shin, Boyoung et al. (2021) Runx1 and Runx3 drive progenitor to T-lineage transcriptome conversion in mouse T cell commitment via dynamic genomic site switching.; Proc Natl Acad Sci U S A, 118: [no pages] |
|
GSE154304.1 |
| Shin, Hae Young et al. (2014) Molecular and cellular changes in the lumbar spinal cord following thoracic injury: regulation by treadmill locomotor training.; PLoS One, 9: e88215 |
|
GSE52763 |
| Shin, Hye-Jin et al. (2014) Physical status of human papillomavirus integration in cervical cancer is associated with treatment outcome of the patients treated with radiotherapy.; PLoS One, 9: e78995 |
|
GSE49288 |
| Shin, Jessica et al. (2007) Lesional gene expression profiling in cutaneous T-cell lymphoma reveals natural clusters associated with disease outcome.; Blood, 110: 3015-27 |
|
GSE9479 |
| Shin, Ji Eun et al. (2023) Targeting FLT3-TAZ signaling to suppress drug resistance in blast phase chronic myeloid leukemia.; Mol Cancer, 22: 177 |
|
GSE226360 |
| Shin, Jiheon et al. (2017) Characterization of developmental defects in the forebrain resulting from hyperactivated mTOR signaling by integrative analysis of transcriptomic and proteomic data.; Sci Rep, 7: 2826 |
|
GSE93325 |
| Shin, Joseph Yusup et al. (2019) Epigenetic activation and memory at aTGFB2enhancer in systemic sclerosis.; Sci Transl Med, 11: [no pages] |
|
GSE130313 |
| Shin, Kun Woo D et al. (2025) mTOR signaling regulates multiple metabolic pathways in human lung fibroblasts after TGF-β and in pulmonary fibrosis.; Am J Physiol Lung Cell Mol Physiol, 328: L215-L228 |
|
GSE270973 |
| Shin, Min Hwa et al. (2016) A RUNX2-Mediated Epigenetic Regulation of the Survival of p53 Defective Cancer Cells.; PLoS Genet, 12: e1005884 |
|
GSE77352 |
| Shin, Sejeong et al. (2023) mTOR inhibition reprograms cellular proteostasis by regulating eIF3D-mediated selective mRNA translation and promotes cell phenotype switching.; Cell Rep, 42: 112868 |
|
GSE229623 |
| Shin, Seula et al. (2021) Qki activates Srebp2-mediated cholesterol biosynthesis for maintenance of eye lens transparency.; Nat Commun, 12: 3005 |
|
GSE145475.2 |
| Shin, Soona et al. (2011) Foxl1-Cre-marked adult hepatic progenitors have clonogenic and bilineage differentiation potential.; Genes Dev, 25: 1185-92 |
|
GSE28890 |
| Shin, Tae Hwan et al. (2021) Silica-coated magnetic nanoparticles activate microglia and induce neurotoxic D-serine secretion.; Part Fibre Toxicol, 18: 30 |
|
GSE154250 |
| Shinagawa, Toshie et al. (2014) Histone variants enriched in oocytes enhance reprogramming to induced pluripotent stem cells.; Cell Stem Cell, 14: 217-27 |
|
GSE53637 |
| Shindyapina, Anastasia V et al. (2014) Dietary methanol regulates human gene activity.; PLoS One, 9: e102837 |
|
GSE58349 GSE58303 GSE58364 GSE58348 |
| Shindyapina, Anastasia V et al. (2022) Rapamycin treatment during development extends life span and health span of male mice andDaphnia magna.; Sci Adv, 8: eabo5482 |
|
GSE207865 |
| Shinjo, Keiko et al. (2024) Novel pharmacologic inhibition of lysine-specific demethylase 1 as a potential therapeutic for glioblastoma.; Cancer Gene Ther, [no vol.]: [no pages] |
|
GSE261472 |
| Shinkawa, Tomohiko et al. (2022) Subtypes in pancreatic ductal adenocarcinoma based on niche factor dependency show distinct drug treatment responses.; J Exp Clin Cancer Res, 41: 89 |
|
GSE181593 |
| Shinno, Yoshitaka et al. (2022) Polycomb EZH1 regulates cell cycle/5-fluorouracil sensitivity of neuroblastoma cells in concert with MYCN.; Cancer Sci, 113: 4193-4206 |
|
GSE188673 |
| Shinohara, Hisaaki et al. (2014) Positive feedback within a kinase signaling complex functions as a switch mechanism for NF-?B activation.; Science, 344: 760-4 |
|
GSE41176 |
| Shinohara, Takashi et al. (2023) Allogeneic offspring produced by induction of PD-L1 in spermatogonial stem cells via self-renewal stimulation.; Stem Cell Reports, 18: 985-998 |
|
GSE129546 |
| Shinozaki, Youichi et al. (2022) Astrocytic dysfunction induced by ABCA1 deficiency causes optic neuropathy.; Sci Adv, 8: eabq1081 |
|
GSE207928 |
| Shintani, Tomoya et al. (2024) Long-term d-allose administration ameliorates age-related cognitive impairment and loss of bone strength in male mice.; Exp Gerontol, 196: 112555 |
|
GSE270340 |
| Shioda, Norifumi et al. (2019) Dopamine D2LReceptor Deficiency Causes Stress Vulnerability through 5-HT1AReceptor Dysfunction in Serotonergic Neurons.; J Neurosci, 39: 7551-7563 |
|
GSE124806 |
| Shioda, Toshi et al. (2006) Importance of dosage standardization for interpreting transcriptomal signature profiles: evidence from studies of xenoestrogens.; Proc Natl Acad Sci U S A, 103: 12033-8 |
|
GSE5200 |
| Shioda, Toshi et al. (2013) Expressomal approach for comprehensive analysis and visualization of ligand sensitivities of xenoestrogen responsive genes.; Proc Natl Acad Sci U S A, 110: 16508-13 |
|
GSE50705 |
| Shipp, Margaret A et al. (2002) Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning.; Nat Med, 8: 68-74 |
|
GSE68895 shipp-dlbcl |
| Shiraishi, Ryo et al. (2024) Cancer-specific epigenome identifies oncogenic hijacking by nuclear factor I family proteins for medulloblastoma progression.; Dev Cell, [no vol.]: [no pages] |
|
GSE241602.2 |
| Shiraishi, Taichi et al. (2024) The complex etiology of autism spectrum disorder due to missense mutations of CHD8.; Mol Psychiatry, 29: 2145-2160 |
|
GSE227579 |
| Shiraki, Nobuhiko et al. (2022) PAX6-positive microglia evolve locally in hiPSC-derived ocular organoids.; Stem Cell Reports, 17: 221-230 |
|
GSE190428 |
| Shirasaki, Ryosuke et al. (2021) Functional Genomics Identify Distinct and Overlapping Genes Mediating Resistance to Different Classes of Heterobifunctional Degraders of Oncoproteins.; Cell Rep, 34: 108532 |
|
GSE162205 |
| Shireman, Jack M et al. (2024) Genomic analysis of human brain metastases treated with stereotactic radiosurgery reveals unique signature based on treatment failure.; iScience, 27: 109601 |
|
GSE256463 |
| Shires, Sarah E et al. (2020) Nuclear Parkin Activates the ERRα Transcriptional Program and Drives Widespread Changes in Gene Expression Following Hypoxia.; Sci Rep, 10: 8499 |
|
GSE139989 |
| Shockley, Keith R et al. (2009) PPARgamma2 nuclear receptor controls multiple regulatory pathways of osteoblast differentiation from marrow mesenchymal stem cells.; J Cell Biochem, 106: 232-46 |
|
GSE10192 |
| Shoda, Asuka et al. (2023) Developmental stage-specific exposure and neurotoxicity evaluation of low-dose clothianidin during neuronal circuit formation.; J Vet Med Sci, 85: 486-496 |
|
GSE218520 |
| Shoda, Jumpei et al. (2022) Semaphorin 3G exacerbates joint inflammation through the accumulation and proliferation of macrophages in the synovium.; Arthritis Res Ther, 24: 134 |
|
GSE176440 |
| Shojo, H et al. (2010) Genetic and histologic evidence implicates role of inflammation in traumatic brain injury-induced apoptosis in the rat cerebral cortex following moderate fluid percussion injury.; Neuroscience, 171: 1273-82 |
|
GSE24047 |
| Sholder, Gabriel et al. (2020) 3'Pool-seq: an optimized cost-efficient and scalable method of whole-transcriptome gene expression profiling.; BMC Genomics, 21: 64 |
|
GSE125570 GSE125568 GSE125569 |
| Sholler, Dennis J et al. (2020) Inherent Motor Impulsivity Associates with Specific Gene Targets in the Rat Medial Prefrontal Cortex.; Neuroscience, 435: 161-173 |
|
GSE141073 |
| Shon, Jong Cheol et al. (2020) Plasma Lipidomics Reveals Insights into Anti-Obesity Effect ofChrysanthemum morifoliumRamat Leaves and Its Constituent Luteolin in High-Fat Diet-Induced Dyslipidemic Mice.; Nutrients, 12: [no pages] |
|
GSE124777 |
| Shonibare, Zainab et al. (2022) Reciprocal SOX2 regulation by SMAD1-SMAD3 is critical for anoikis resistance and metastasis in cancer.; Cell Rep, 40: 111066 |
|
GSE185932 |
| Shoob, Shiri et al. (2023) Deep brain stimulation of thalamic nucleus reuniens promotes neuronal and cognitive resilience in an Alzheimer's disease mouse model.; Nat Commun, 14: 7002 |
|
GSE245201 |
| Shore, Amy N et al. (2012) Pregnancy-induced noncoding RNA (PINC) associates with polycomb repressive complex 2 and regulates mammary epithelial differentiation.; PLoS Genet, 8: e1002840 |
|
GSE38052 |
| Shornick, Laurie P et al. (2008) Airway epithelial versus immune cell Stat1 function for innate defense against respiratory viral infection.; J Immunol, 180: 3319-28 |
|
GSE10211 |
| Shorthouse, David et al. (2023) KCNQ potassium channels modulate Wnt activity in gastro-oesophageal adenocarcinomas.; Life Sci Alliance, 6: [no pages] |
|
GSE242782 |
| Shortt, Jake et al. (2014) The drug vehicle and solvent N-methylpyrrolidone is an immunomodulator and antimyeloma compound.; Cell Rep, 7: 1009-19 |
|
GSE56623 |
| Shoshani-Haye, Keren et al. (2025) Prenatal stress induces transient developmental alterations in distinct GABAergic populations and leads to long-lasting behavioral abnormalities.; Neurobiol Stress, 38: 100749 |
|
GSE296365 |
| Showe, Michael K et al. (2009) Gene expression profiles in peripheral blood mononuclear cells can distinguish patients with non-small cell lung cancer from patients with nonmalignant lung disease.; Cancer Res, 69: 9202-10 |
|
GSE13255 |
| Shpargel, Karl B et al. (2020) The KMT2D Kabuki syndrome histone methylase controls neural crest cell differentiation and facial morphology.; Development, 147: [no pages] |
|
GSE149688 |
| Shpokayte, Monika et al. (2022) Hippocampal cells segregate positive and negative engrams.; Commun Biol, 5: 1009 |
|
GSE198731 |
| Shpyleva, Svitlana et al. (2014) Cerebellar oxidative DNA damage and altered DNA methylation in the BTBR T+tf/J mouse model of autism and similarities with human post mortem cerebellum.; PLoS One, 9: e113712 |
|
GSE62594 |
| Shreeve, Norman et al. (2021) The CD94/NKG2A inhibitory receptor educates uterine NK cells to optimize pregnancy outcomes in humans and mice.; Immunity, 54: 1231-1244.e4 |
|
GSE173478 |
| Shrestha, Dewan et al. (2022) Genomics and epigenetics guided identification of tissue-specific genomic safe harbors.; Genome Biol, 23: 199 |
|
GSE183935 |
| Shrestha, Padmina et al. (2023) Chd5 Regulates the Transcription Factor Six3 to Promote Neuronal Differentiation.; Stem Cells, 41: 242-251 |
|
GSE208168 |
| Shrestha, Prerana et al. (2015) Layer 2/3 pyramidal cells in the medial prefrontal cortex moderate stress induced depressive behaviors.; Elife, 4: [no pages] |
|
GSE69340 |
| Shrestha, Swikriti et al. (2025) Modeling diabetic alpha cell dysfunction using stem cell-derived alpha cells.; Stem Cell Reports, 20: 102504 |
|
GSE293266 |
| Shtilbans, Alexander et al. (2011) Differential gene expression in patients with amyotrophic lateral sclerosis.; Amyotroph Lateral Scler, 12: 250-6 |
|
GSE26276 |
| Shu, Jian et al. (2013) Induction of pluripotency in mouse somatic cells with lineage specifiers.; Cell, 153: 963-75 |
|
GSE47441.3 GSE47441.2 |
| Shu, Le et al. (2019) Prenatal Bisphenol A Exposure in Mice Induces Multitissue Multiomics Disruptions Linking to Cardiometabolic Disorders.; Endocrinology, 160: 409-429 |
|
GSE121606 |
| Shu, Linyi et al. (2020) Resveratrol improves high-fat diet-induced insulin resistance in mice by downregulating the lncRNA NONMMUT008655.2.; Am J Transl Res, 12: 1-18 |
|
GSE137840 |
| Shu, Shaokun et al. (2016) Response and resistance to BET bromodomain inhibitors in triple-negative breast cancer.; Nature, 529: 413-417 |
|
GSE63582 |
| Shuai, Yi et al. (2011) Global gene expression profiles of MT knockout and wild-type mice in the condition of doxorubicin-induced cardiomyopathy.; Toxicol Lett, 200: 77-87 |
|
GSE23598 |
| Shubayev, Veronica I et al. (2022) A human coronavirus OC43-derived polypeptide causes neuropathic pain.; EMBO Rep, 23: e54069 |
|
GSE182706 |
| Shue, Yan Ting et al. (2022) A conserved YAP/Notch/REST network controls the neuroendocrine cell fate in the lungs.; Nat Commun, 13: 2690 |
|
GSE185413 GSE171914 GSE171915 |
| Shukla, Arti et al. (2009) Alterations in gene expression in human mesothelial cells correlate with mineral pathogenicity.; Am J Respir Cell Mol Biol, 41: 114-23 |
|
GSE14034 |
| Shukla, Rammohan et al. (2019) The Relative Contributions of Cell-Dependent Cortical Microcircuit Aging to Cognition and Anxiety.; Biol Psychiatry, 85: 257-267 |
|
GSE119183 |
| Shukla, Sanjeev et al. (2011) CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.; Nature, 479: 74-9 |
|
GSE31486 |
| Shum, Andrew et al. (2023) Octopamine metabolically reprograms astrocytes to confer neuroprotection against α-synuclein.; Proc Natl Acad Sci U S A, 120: e2217396120 |
|
GSE213875 |
| Shurin, Galina V et al. (2019) Melanoma-Induced Reprogramming of Schwann Cell Signaling Aids Tumor Growth.; Cancer Res, 79: 2736-2747 |
|
GSE126040 |
| Shuster, Diana L et al. (2013) Gestational age-dependent changes in gene expression of metabolic enzymes and transporters in pregnant mice.; Drug Metab Dispos, 41: 332-42 |
|
GSE41438 |
| Shutova, Maria V et al. (2016) An integrative analysis of reprogramming in human isogenic system identified a clone selection criterion.; Cell Cycle, 15: 986-97 |
|
GSE70735 |
| Si, Han et al. (2009) Human and murine kidneys show gender- and species-specific gene expression differences in response to injury.; PLoS One, 4: e4802 |
|
GSE12682 GSE12683 |
| Si, Wei-Yue et al. (2024) Therapeutic potential of microglial SMEK1 in regulating H3K9 lactylation in cerebral ischemia-reperfusion.; Commun Biol, 7: 1701 |
|
GSE283233 |
| Si, Youwen et al. (2023) Circadian rhythm sleep disorders and time-of-day-dependent memory deficiency in Presenilin1/2 conditional knockout mice with long noncoding RNA expression profiling changes.; Sleep Med, 103: 146-158 |
|
GSE211860 |
| Sia, Daniela et al. (2013) Integrative molecular analysis of intrahepatic cholangiocarcinoma reveals 2 classes that have different outcomes.; Gastroenterology, 144: 829-40 |
|
GSE33327 |
| Sia, Daniela et al. (2015) Massive parallel sequencing uncovers actionable FGFR2-PPHLN1 fusion and ARAF mutations in intrahepatic cholangiocarcinoma.; Nat Commun, 6: 6087 |
|
GSE63420 |
| Sibley, Lydia A et al. (2021) Differential DNA methylation and transcriptional signatures characterize impairment of muscle stem cells in pediatric human muscle contractures after brain injury.; FASEB J, 35: e21928 |
|
GSE181376 |
| Sidarovich, Viktoryia et al. (2015) Translational downregulation of HSP90 expression by iron chelators in neuroblastoma cells.; Mol Pharmacol, 87: 513-24 |
|
GSE60675 |
| Siddens, Lisbeth K et al. (2012) Polycyclic aromatic hydrocarbons as skin carcinogens: comparison of benzo[a]pyrene, dibenzo[def,p]chrysene and three environmental mixtures in the FVB/N mouse.; Toxicol Appl Pharmacol, 264: 377-86 |
|
GSE39455 |
| Siddle, Katherine J et al. (2014) A genomic portrait of the genetic architecture and regulatory impact of microRNA expression in response to infection.; Genome Res, 24: 850-9 |
|
GSE53143 |
| Sideris-Lampretsas, George et al. (2023) Galectin-3 activates spinal microglia to induce inflammatory nociception in wild type but not in mice modelling Alzheimer's disease.; Nat Commun, 14: 3579 |
|
GSE213157 |