List of all 21,870 published papers with data in Gemma:
To search for a paper or experiment and see more details, visit the annotated paper search page.
| Rheinbay, Esther et al. (2013) An aberrant transcription factor network essential for Wnt signaling and stem cell maintenance in glioblastoma.; Cell Rep, [no vol.]: [no pages] |
|
GSE45899 |
| Rhinn, Muriel et al. (2022) Aberrant induction of p19Arf-mediated cellular senescence contributes to neurodevelopmental defects.; PLoS Biol, 20: e3001664 |
|
GSE175680 |
| Rhyasen, Garrett W et al. (2016) AZD5153: A Novel Bivalent BET Bromodomain Inhibitor Highly Active against Hematologic Malignancies.; Mol Cancer Ther, 15: 2563-2574 |
|
GSE85840 |
| Riaz, Muhammad et al. (2009) Low-risk susceptibility alleles in 40 human breast cancer cell lines.; BMC Cancer, 9: 236 |
|
GSE16732 |
| Riba, Michela et al. (2013) A strong anti-inflammatory signature revealed by liver transcription profiling of Tmprss6-/- mice.; PLoS One, 8: e69694 |
|
GSE46287 |
| Ribeiro, Carla Maria P et al. (2009) Azithromycin treatment alters gene expression in inflammatory, lipid metabolism, and cell cycle pathways in well-differentiated human airway epithelia.; PLoS One, 4: e5806 |
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GSE10592 |
| Ribeiro, Efrain A et al. (2017) Gene Network Dysregulation in Dorsolateral Prefrontal Cortex Neurons of Humans with Cocaine Use Disorder.; Sci Rep, 7: 5412 |
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GSE99349 |
| Ribeiro, Efrain A et al. (2018) Transcriptional and physiological adaptations in nucleus accumbens somatostatin interneurons that regulate behavioral responses to cocaine.; Nat Commun, 9: 3149 |
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GSE116484 |
| Ribeiro, Fabiola M et al. (2014) Metabotropic glutamate receptor 5 knockout promotes motor and biochemical alterations in a mouse model of Huntington's disease.; Hum Mol Genet, 23: 2030-42 |
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GSE50379 |
| Ribeiro, Marcio et al. (2022) Retinal ganglion cell expression of cytokine enhances occupancy of NG2 cell-derived astrocytes at the nerve injury site: Implication for axon regeneration.; Exp Neurol, 355: 114147 |
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GSE196824 |
| Ribeiro, Mayara C et al. (2022) Vitamin D modulates cortical transcriptome and behavioral phenotypes in an Mecp2 heterozygous Rett syndrome mouse model.; Neurobiol Dis, 165: 105636 |
|
GSE180630 |
| Ribet, Carole et al. (2010) Peroxisome proliferator-activated receptor-alpha control of lipid and glucose metabolism in human white adipocytes.; Endocrinology, 151: 123-33 |
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GSE15862 |
| Ricard, Guénola et al. (2010) Phenotypic consequences of copy number variation: insights from Smith-Magenis and Potocki-Lupski syndrome mouse models.; PLoS Biol, 8: e1000543 |
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GSE14802 |
| Ricarte-Filho, Julio C et al. (2013) Identification of kinase fusion oncogenes in post-Chernobyl radiation-induced thyroid cancers.; J Clin Invest, 123: 4935-44 |
|
GSE48850 |
| Riccardo, Federica et al. (2014) Characterization of a genetic mouse model of lung cancer: a promise to identify Non-Small Cell Lung Cancer therapeutic targets and biomarkers.; BMC Genomics, 15 Suppl 3: S1 |
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GSE30878 |
| Richards, Zachary et al. (2017) Prostatic compensation of the vitamin D axis in African American men.; JCI Insight, 2: e91054 |
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GSE91037 |
| Richardson, Andrea L et al. (2006) X chromosomal abnormalities in basal-like human breast cancer.; Cancer Cell, 9: 121-32 |
|
GSE7904 |
| Richert, Laura et al. (2013) Cytokine and gene transcription profiles of immune responses elicited by HIV lipopeptide vaccine in HIV-negative volunteers.; AIDS, 27: 1421-1431 |
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GSE39506 |
| Richetto, Juliet et al. (2017) Genome-Wide Transcriptional Profiling and Structural Magnetic Resonance Imaging in the Maternal Immune Activation Model of Neurodevelopmental Disorders.; Cereb Cortex, 27: 3397-3413 |
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GSE77971 |
| Richter, Gesa et al. (2021) β-catenin regulates FOXP2 transcriptional activity via multiple binding sites.; FEBS J, 288: 3261-3284 |
|
GSE138938 |
| Richter, Julia et al. (2012) Recurrent mutation of the ID3 gene in Burkitt lymphoma identified by integrated genome, exome and transcriptome sequencing.; Nat Genet, 44: 1316-20 |
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GSE22470 |
| Richter, Uwe et al. (2013) A mitochondrial ribosomal and RNA decay pathway blocks cell proliferation.; Curr Biol, 23: 535-41 |
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GSE44109 |
| Richter, William F et al. (2021) Non-canonical H3K79me2-dependent pathways promote the survival of MLL-rearranged leukemia.; Elife, 10: [no pages] |
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GSE162441 |
| Richtmann, Sarah et al. (2024) The pregnancy-associated protein glycodelin as a potential sex-specific target for resistance to immunotherapy in non-small cell lung cancer.; Transl Res, 272: 177-189 |
|
GSE222124 |
| Rickels, Ryan et al. (2020) A small UTX stabilization domain of Trr is conserved within mammalian MLL3-4/COMPASS and is sufficient to rescue loss of viability in null animals.; Genes Dev, 34: 1493-1502 |
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GSE158672 |
| Rickman, D S et al. (2001) Distinctive molecular profiles of high-grade and low-grade gliomas based on oligonucleotide microarray analysis.; Cancer Res, 61: 6885-91 |
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GSE70231 |
| Rickman, Olivia J et al. (2024) Tmprss2 maintains epithelial barrier integrity and transepithelial sodium transport.; Life Sci Alliance, 7: [no pages] |
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GSE247775 |
| Rico-Bautista, Elizabeth et al. (2013) Small molecule-induced mitochondrial disruption directs prostate cancer inhibition via UPR signaling.; Oncotarget, 4: 1212-29 |
|
GSE48056 |
| Riddell, David R et al. (2007) The LXR agonist TO901317 selectively lowers hippocampal Abeta42 and improves memory in the Tg2576 mouse model of Alzheimer's disease.; Mol Cell Neurosci, 34: 621-8 |
|
GSE31624 |
| Riechelmann-Casarin, Luana et al. (2025) Are glyphosate or glyphosate-based herbicides linked to metabolic dysfunction-associated steatotic liver disease (MASLD)? The weight of current evidence.; Environ Toxicol Pharmacol, 116: 104705 |
|
GSE292868 |
| Riechert, Georg et al. (2022) miRNA-Mediated Priming of Macrophage M1 Differentiation Differs in Gram-Positive and Gram-Negative Settings.; Genes (Basel), 13: [no pages] |
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GSE162994 GSE142088 |
| Rieck, Sarah et al. (2021) Inhibition of Vascular Growth by Modulation of the Anandamide/Fatty Acid Amide Hydrolase Axis.; Arterioscler Thromb Vasc Biol, [no vol.]: ATVBAHA121316973 |
|
GSE152552 |
| Riedel, Simone S et al. (2016) MLL1 and DOT1L cooperate with meningioma-1 to induce acute myeloid leukemia.; J Clin Invest, 126: 1438-50 |
|
GSE76747 GSE76749 GSE76748 |
| Riedmayr, Lisa Maria et al. (2023) mRNA trans-splicing dual AAV vectors for (epi)genome editing and gene therapy.; Nat Commun, 14: 6578 |
|
GSE198893 |
| Rieger, Kerri E et al. (2004) Portrait of transcriptional responses to ultraviolet and ionizing radiation in human cells.; Nucleic Acids Res, 32: 4786-803 |
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GSE1977 |
| Rieger, Kerri E et al. (2004) Toxicity from radiation therapy associated with abnormal transcriptional responses to DNA damage.; Proc Natl Acad Sci U S A, 101: 6635-40 |
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GSE1725 |
| Rieger, Michael A et al. (2020) CLIP and Massively Parallel Functional Analysis of CELF6 Reveal a Role in Destabilizing Synaptic Gene mRNAs through Interaction with 3' UTR Elements.; Cell Rep, 33: 108531 |
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GSE160293 |
| Riehle, Kimberly J et al. (2008) Regulation of liver regeneration and hepatocarcinogenesis by suppressor of cytokine signaling 3.; J Exp Med, 205: 91-103 |
|
GSE9549 |
| Rieker, Claus et al. (2019) Apolipoprotein E4 Expression Causes Gain of Toxic Function in Isogenic Human Induced Pluripotent Stem Cell-Derived Endothelial Cells.; Arterioscler Thromb Vasc Biol, 39: e195-e207 |
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GSE111366 |
| Riemenschneider, Henrick et al. (2023) Targeting the glycine-rich domain of TDP-43 with antibodies prevents its aggregation in vitro and reduces neurofilament levels in vivo.; Acta Neuropathol Commun, 11: 112 |
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GSE233669 |
| Riera, Celine E et al. (2017) The Sense of Smell Impacts Metabolic Health and Obesity.; Cell Metab, 26: 198-211.e5 |
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GSE85329 |
| Riesenberg, Stefanie et al. (2015) MITF and c-Jun antagonism interconnects melanoma dedifferentiation with pro-inflammatory cytokine responsiveness and myeloid cell recruitment.; Nat Commun, 6: 8755 |
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GSE71886 GSE71881 GSE71798 |
| Rieskamp, Joshua D et al. (2023) Excitatory amino acid transporter 1 supports adult hippocampal neural stem cell self-renewal.; iScience, 26: 107068 |
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GSE217059 |
| Riessland, Markus et al. (2017) Neurocalcin Delta Suppression Protects against Spinal Muscular Atrophy in Humans and across Species by Restoring Impaired Endocytosis.; Am J Hum Genet, 100: 297-315 |
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GSE58316 |
| Riester, Markus et al. (2012) Combination of a novel gene expression signature with a clinical nomogram improves the prediction of survival in high-risk bladder cancer.; Clin Cancer Res, 18: 1323-33 |
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GSE31684 |
| Rigillo, Giovanna et al. (2021) The transcription factor NF-Y participates to stem cell fate decision and regeneration in adult skeletal muscle.; Nat Commun, 12: 6013 |
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GSE154017 |
| Rigo, Piero et al. (2025) Sequential transcriptional programs underpin activation of hippocampal stem cells.; Sci Adv, 11: eadu4523 |
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GSE280296 |
| Riising, Eva Madi et al. (2014) Gene silencing triggers polycomb repressive complex 2 recruitment to CpG islands genome wide.; Mol Cell, 55: 347-60 |
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GSE58017 GSE58016 |
| Riker, Adam I et al. (2008) The gene expression profiles of primary and metastatic melanoma yields a transition point of tumor progression and metastasis.; BMC Med Genomics, 1: 13 |
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GSE7553 |
| Riley, Brigit E et al. (2014) Systems-based analyses of brain regions functionally impacted in Parkinson's disease reveals underlying causal mechanisms.; PLoS One, 9: e102909 |
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GSE54282 |
| Riley, Victoria A et al. (2022) Tsc2shapes olfactory bulb granule cell molecular and morphological characteristics.; Front Mol Neurosci, 15: 970357 |
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GSE206287 |
| Riley, Victoria A et al. (2023) Tsc2coordinates neuroprogenitor differentiation.; iScience, 26: 108442 |
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GSE229552 |
| Rimbault, Maud et al. (2009) RNA profiles of rat olfactory epithelia: individual and age related variations.; BMC Genomics, 10: 572 |
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GSE15953 GSE15952 |
| Rimmerman, Neta et al. (2022) Microglia and their LAG3 checkpoint underlie the antidepressant and neurogenesis-enhancing effects of electroconvulsive stimulation.; Mol Psychiatry, 27: 1120-1135 |
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GSE123027 |
| Rincel, Marion et al. (2019) Multi-hit early life adversity affects gut microbiota, brain and behavior in a sex-dependent manner.; Brain Behav Immun, 80: 179-192 |
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GSE116416 |
| Rincón-Cortés, Millie et al. (2015) Enduring good memories of infant trauma: rescue of adult neurobehavioral deficits via amygdala serotonin and corticosterone interaction.; Proc Natl Acad Sci U S A, 112: 881-6 |
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GSE58548 |
| Ring, Aaron M et al. (2012) Mechanistic and structural insight into the functional dichotomy between IL-2 and IL-15.; Nat Immunol, 13: 1187-95 |
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GSE40350 |
| Ring, Karen L et al. (2012) Direct reprogramming of mouse and human fibroblasts into multipotent neural stem cells with a single factor.; Cell Stem Cell, 11: 100-9 |
|
GSE37859 |
| Ring, Karen L et al. (2015) Genomic Analysis Reveals Disruption of Striatal Neuronal Development and Therapeutic Targets in Human Huntington's Disease Neural Stem Cells.; Stem Cell Reports, 5: 1023-1038 |
|
GSE74201 |
| Ringeling, Francisca Rojas et al. (2022) Partitioning RNAs by length improves transcriptome reconstruction from short-read RNA-seq data.; Nat Biotechnol, 40: 741-750 |
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GSE158985.1 |
| Rink, Lori et al. (2009) Gene expression signatures and response to imatinib mesylate in gastrointestinal stromal tumor.; Mol Cancer Ther, 8: 2172-82 |
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GSE15966 |
| Rink, Lori et al. (2013) ZNF-mediated resistance to imatinib mesylate in gastrointestinal stromal tumor.; PLoS One, 8: e54477 |
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GSE40080 |
| Rinn, John L et al. (2004) Major molecular differences between mammalian sexes are involved in drug metabolism and renal function.; Dev Cell, 6: 791-800 |
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GSE1148 GSE1147 |
| Riordan, Jesse D et al. (2025) A critical role of FAK signaling in Rac1-driven melanoma cell resistance to MAPK pathway inhibition.; Oncogene, 44: 4520-4532 |
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GSE285131 |
| Ripamonti, Silvia et al. (2020) SUMOylation controls the neurodevelopmental function of the transcription factor Zbtb20.; J Neurochem, 154: 647-661 |
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GSE143926 |
| Ripoll, Clémentine et al. (2012) Molecular signatures of cardiac defects in Down syndrome lymphoblastoid cell lines suggest altered ciliome and Hedgehog pathways.; PLoS One, 7: e41616 |
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GSE34457 GSE34458 |
| Riquelme, Paloma et al. (2013) IFN-?-induced iNOS expression in mouse regulatory macrophages prolongs allograft survival in fully immunocompetent recipients.; Mol Ther, 21: 409-22 |
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GSE32690 |
| Risbano, Michael G et al. (2010) Altered immune phenotype in peripheral blood cells of patients with scleroderma-associated pulmonary hypertension.; Clin Transl Sci, 3: 210-8 |
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GSE22356 |
| Riskawati, Yhusi Karina et al. (2025) Enhancing Skeletal Muscle Fiber Type Transition Through Substrate Coating Alteration in Myoblast Cell Culture.; Int J Mol Sci, 26: [no pages] |
|
GSE279968 |
| Risom, Tyler et al. (2018) Differentiation-state plasticity is a targetable resistance mechanism in basal-like breast cancer.; Nat Commun, 9: 3815 |
|
GSE82032 |
| Ritchie, Erin M et al. (2025) Translatome analysis reveals cellular network in DLK-dependent hippocampal glutamatergic neuron degeneration.; Elife, 13: [no pages] |
|
GSE266662 |
| Ritter, K Elaine et al. (2021) 5-HT3 Signaling Alters Development of Sacral Neural Crest Derivatives That Innervate the Lower Urinary Tract.; Int J Mol Sci, 22: [no pages] |
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GSE108943 |
| Ritter, McKenzie L et al. (2024) Krüppel-like factor 4 in transcriptional control of the three unique isoforms of Agouti-related peptide in mice.; Physiol Genomics, 56: 265-275 |
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GSE225038 GSE224716 |
| Ritzel, Rodney M et al. (2023) Brain injury accelerates the onset of a reversible age-related microglial phenotype associated with inflammatory neurodegeneration.; Sci Adv, 9: eadd1101 |
|
GSE206618 |
| Riva, Laura et al. (2012) Poly-glutamine expanded huntingtin dramatically alters the genome wide binding of HSF1.; J Huntingtons Dis, 1: 33-45 |
|
GSE38001 |
| Riveiro, Maria E et al. (2016) OTX015 (MK-8628), a novel BET inhibitor, exhibits antitumor activity in non-small cell and small cell lung cancer models harboring different oncogenic mutations.; Oncotarget, 7: 84675-84687 |
|
GSE72961 |
| Rivellini, Cristina et al. (2022) JAB1 deletion in oligodendrocytes causes senescence-induced inflammation and neurodegeneration in mice.; J Clin Invest, 132: [no pages] |
|
GSE184573 |
| Rivera, A D et al. (2022) Drug connectivity mapping and functional analysis reveal therapeutic small molecules that differentially modulate myelination.; Biomed Pharmacother, 145: 112436 |
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GSE179189 |
| Rivera, Andrea D et al. (2019) Astrocytes are direct cellular targets of lithium treatment: novel roles for lysyl oxidase and peroxisome-proliferator activated receptor-γ as astroglial targets of lithium.; Transl Psychiatry, 9: 211 |
|
GSE132397 |
| Rivera, Oscar et al. (2024) Rhes, a striatal enriched protein, regulates post-translational small-ubiquitin-like-modifier (SUMO) modification of nuclear proteins and alters gene expression.; Cell Mol Life Sci, 81: 169 |
|
GSE150990 |
| Rivera-Correa, Juan et al. (2025) ROCK1 promotes B cell differentiation and proteostasis under stress through the heme-regulated proteins, BACH2 and HRI.; JCI Insight, 10: [no pages] |
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GSE237201.1 GSE237201.2 GSE237201.3 |
| Rivera-Escalera, Fátima et al. (2019) IL-1β-driven amyloid plaque clearance is associated with an expansion of transcriptionally reprogrammed microglia.; J Neuroinflammation, 16: 261 |
|
GSE113539 |
| Rivera-Feliciano, José et al. (2006) Development of heart valves requires Gata4 expression in endothelial-derived cells.; Development, 133: 3607-18 |
|
GSE5298 |
| Riveros, Carlos et al. (2010) A transcription factor map as revealed by a genome-wide gene expression analysis of whole-blood mRNA transcriptome in multiple sclerosis.; PLoS One, 5: e14176 |
|
GSE17048 |
| Riz, Irene et al. (2015) KLF4-SQSTM1/p62-associated prosurvival autophagy contributes to carfilzomib resistance in multiple myeloma models.; Oncotarget, 6: 14814-31 |
|
GSE69078 |
| Rizig, Mie A et al. (2012) A gene expression and systems pathway analysis of the effects of clozapine compared to haloperidol in the mouse brain implicates susceptibility genes for schizophrenia.; J Psychopharmacol, 26: 1218-30 |
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GSE6467 GSE6511 |
| Rizkalla, Salwa W et al. (2012) Differential effects of macronutrient content in 2 energy-restricted diets on cardiovascular risk factors and adipose tissue cell size in moderately obese individuals: a randomized controlled trial.; Am J Clin Nutr, 95: 49-63 |
|
GSE27121 |